BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22890.1 Length=1468 Score E Sequences producing significant alignments: (Bits) Value Ahg326585 jgi|Araly1|326585|fgenesh1_pm.C_scaffold_6001805 1613 0.0 > Ahg326585 jgi|Araly1|326585|fgenesh1_pm.C_scaffold_6001805 Length=1107 Score = 1613 bits (873), Expect = 0.0 Identities = 1033/1111 (93%), Gaps = 8/1111 (1%) Strand=Plus/Plus Query 78 ATGAATCGAGATGAGCATATTGCAAAGAAAGTTGAAGGATCAATCTCTAGCTTCTCCGGG 137 ||||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||| || Sbjct 1 ATGAATCGAGATGAGCATATTACAAATAAAGGAGAAGGGTCAATGTCTAGCTTCTCC-GG 59 Query 138 GA-GACCAGTACTTCCTCAAAACAAATCTATGTTAATCCCGTGACCACGACCGGGACGAA 196 || |||||||||||||||||||||||||| |||||||||||||| || ||||| | || Sbjct 60 GACGACCAGTACTTCCTCAAAACAAATCTCCCTTAATCCCGTGACCGCGGCCGGGGCAAA 119 Query 197 ATCAATGGAAGACGACGACGTTTCACTCTCTCTTCTATACAATCTATCTACCTTACATGA 256 |||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| || Sbjct 120 ATCATTGGAAGAAGACGACGTTTCACTCTCCCTTCTATATAATCTGTCTACCTTACAAGA 179 Query 257 AAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGGTATCTACTAATAACATTAA 316 ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 180 CAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGATATCTAGTAATAACATTAA 239 Query 317 CCAATCCTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGAT 376 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCAATACTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGAT 299 Query 377 CATCACGGCTGCTTCATCCATGTTATATACTTGCCAACAACTCCAAATCGGATCTAACAA 436 ||| |||||||||||||||||||| || ||||||||||||||||| ||||||||| || Sbjct 300 CATTACGGCTGCTTCATCCATGTTGTACACTTGCCAACAACTCCACATCGGATCT---AA 356 Query 437 CAACAACAACGATATCGATAATGATCAAACCGTAGATGCAATGGTTTTGGAGTTTTCCCG 496 ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 357 CAACAGCAACGATATCGATAACGATCACACCGTAGATGCAATGGTTTTGGAGTTTTCCCG 416 Query 497 ACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTCCA 556 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 417 ACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTTCA 476 Query 557 AGAAAGAGGGCAGATCTCGTTTCCCGACCAGAATCTTGATTGGTACAACACCGAAACCAT 616 ||||||||| ||| |||||||||| ||||||||| ||| ||||| |||| |||||| | Sbjct 477 AGAAAGAGGACAGGTCTCGTTTCCTAACCAGAATCATGACTGGTATGACACAGAAACCCT 536 Query 617 AAACCCTAAAAAAGATAAACATCGTTCTAAACCAAGTTCCGGGAGCTACGATATACTGGA 676 ||| ||||||||||||||||||||||||||||||| |||||| |||||| ||| |||| Sbjct 537 AAATCCTAAAAAAGATAAACATCGTTCTAAACCAAAACCCGGGAACTACGAGATATTGGA 596 Query 677 GCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGG 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 597 GCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGG 656 Query 737 GTTTAAGAGAGACGCTAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGAC 796 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 GTTTAAGAGAGACGCGAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGAC 716 Query 797 ACGTGAGGCCTTGATCAGCCCAACGAGCCAAGACAAGAAAGGAGGATACTCGTTAAAGAA 856 ||| |||||||| |||||||||||||||||||| |||||||||| |||| |||| ||||| Sbjct 717 ACGCGAGGCCTTAATCAGCCCAACGAGCCAAGAAAAGAAAGGAGAATACACGTTGAAGAA 776 Query 857 ACATTACTACTCCTGTCCTCAACACGGGTGTAGATGGAACCAGAGGCACGAGAAGTTTCA 916 |||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| || Sbjct 777 ACATTACTACTCGTGCCCTCATCAAGGGTGTAGATGGAACCAGAGACACGAGAAGTTCCA 836 Query 917 ACCGTTGAAATCTGTGATTTGCGCCAAGAATCATTACAAGAGGAGTCATTGTCCCAAAAT 976 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 837 ACCGTTGAAATCTGTGATTTGTGCCAAGAATCATTACAAGAGGAGTCATTGTCCTAAAAT 896 Query 977 GTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACACA 1036 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 897 GTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACGCA 956 Query 1037 CGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAA 1096 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 CGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAA 1016 Query 1097 AGACAAGCTGATGAGCCACGTTTCTTTGTTTTTGGGCCACGTACCGGCACATGGGTCGTC 1156 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1017 AGACAAGCTTATGAGCCACGTTTCTTTGTTCTTGGGCCACGTACCGGCACATGGGTCGTC 1076 Query 1157 CAAGCCGCCGACAA---TCACCCTAAAGTAA 1184 | ||||||| |||| |||| ||||||||| Sbjct 1077 CCAGCCGCCAACAACAATCACACTAAAGTAA 1107 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54926133290 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5