BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22890.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326585 jgi|Araly1|326585|fgenesh1_pm.C_scaffold_6001805 1613 0.0
> Ahg326585 jgi|Araly1|326585|fgenesh1_pm.C_scaffold_6001805
Length=1107
Score = 1613 bits (873), Expect = 0.0
Identities = 1033/1111 (93%), Gaps = 8/1111 (1%)
Strand=Plus/Plus
Query 78 ATGAATCGAGATGAGCATATTGCAAAGAAAGTTGAAGGATCAATCTCTAGCTTCTCCGGG 137
||||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||| ||
Sbjct 1 ATGAATCGAGATGAGCATATTACAAATAAAGGAGAAGGGTCAATGTCTAGCTTCTCC-GG 59
Query 138 GA-GACCAGTACTTCCTCAAAACAAATCTATGTTAATCCCGTGACCACGACCGGGACGAA 196
|| |||||||||||||||||||||||||| |||||||||||||| || ||||| | ||
Sbjct 60 GACGACCAGTACTTCCTCAAAACAAATCTCCCTTAATCCCGTGACCGCGGCCGGGGCAAA 119
Query 197 ATCAATGGAAGACGACGACGTTTCACTCTCTCTTCTATACAATCTATCTACCTTACATGA 256
|||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 120 ATCATTGGAAGAAGACGACGTTTCACTCTCCCTTCTATATAATCTGTCTACCTTACAAGA 179
Query 257 AAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGGTATCTACTAATAACATTAA 316
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 180 CAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGATATCTAGTAATAACATTAA 239
Query 317 CCAATCCTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGAT 376
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCAATACTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGAT 299
Query 377 CATCACGGCTGCTTCATCCATGTTATATACTTGCCAACAACTCCAAATCGGATCTAACAA 436
||| |||||||||||||||||||| || ||||||||||||||||| ||||||||| ||
Sbjct 300 CATTACGGCTGCTTCATCCATGTTGTACACTTGCCAACAACTCCACATCGGATCT---AA 356
Query 437 CAACAACAACGATATCGATAATGATCAAACCGTAGATGCAATGGTTTTGGAGTTTTCCCG 496
||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 357 CAACAGCAACGATATCGATAACGATCACACCGTAGATGCAATGGTTTTGGAGTTTTCCCG 416
Query 497 ACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTCCA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 ACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTTCA 476
Query 557 AGAAAGAGGGCAGATCTCGTTTCCCGACCAGAATCTTGATTGGTACAACACCGAAACCAT 616
||||||||| ||| |||||||||| ||||||||| ||| ||||| |||| |||||| |
Sbjct 477 AGAAAGAGGACAGGTCTCGTTTCCTAACCAGAATCATGACTGGTATGACACAGAAACCCT 536
Query 617 AAACCCTAAAAAAGATAAACATCGTTCTAAACCAAGTTCCGGGAGCTACGATATACTGGA 676
||| ||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||
Sbjct 537 AAATCCTAAAAAAGATAAACATCGTTCTAAACCAAAACCCGGGAACTACGAGATATTGGA 596
Query 677 GCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGG 656
Query 737 GTTTAAGAGAGACGCTAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGAC 796
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GTTTAAGAGAGACGCGAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGAC 716
Query 797 ACGTGAGGCCTTGATCAGCCCAACGAGCCAAGACAAGAAAGGAGGATACTCGTTAAAGAA 856
||| |||||||| |||||||||||||||||||| |||||||||| |||| |||| |||||
Sbjct 717 ACGCGAGGCCTTAATCAGCCCAACGAGCCAAGAAAAGAAAGGAGAATACACGTTGAAGAA 776
Query 857 ACATTACTACTCCTGTCCTCAACACGGGTGTAGATGGAACCAGAGGCACGAGAAGTTTCA 916
|||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| ||
Sbjct 777 ACATTACTACTCGTGCCCTCATCAAGGGTGTAGATGGAACCAGAGACACGAGAAGTTCCA 836
Query 917 ACCGTTGAAATCTGTGATTTGCGCCAAGAATCATTACAAGAGGAGTCATTGTCCCAAAAT 976
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 837 ACCGTTGAAATCTGTGATTTGTGCCAAGAATCATTACAAGAGGAGTCATTGTCCTAAAAT 896
Query 977 GTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACACA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 GTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACGCA 956
Query 1037 CGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAA 1016
Query 1097 AGACAAGCTGATGAGCCACGTTTCTTTGTTTTTGGGCCACGTACCGGCACATGGGTCGTC 1156
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1017 AGACAAGCTTATGAGCCACGTTTCTTTGTTCTTGGGCCACGTACCGGCACATGGGTCGTC 1076
Query 1157 CAAGCCGCCGACAA---TCACCCTAAAGTAA 1184
| ||||||| |||| |||| |||||||||
Sbjct 1077 CCAGCCGCCAACAACAATCACACTAAAGTAA 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5