BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22900.1
Length=2469
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489145 jgi|Araly1|489145|fgenesh2_kg.6__2279__AT5G22900.1 3531 0.0
> Ahg489145 jgi|Araly1|489145|fgenesh2_kg.6__2279__AT5G22900.1
Length=2448
Score = 3531 bits (1912), Expect = 0.0
Identities = 2290/2472 (93%), Gaps = 27/2472 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGTGTTTGGAGATAATAAGATGTTTTACATGAGAGACACATGGAGAGAAGGAACC 60
||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1 ATGGAGGAGTTTGGAGATAATAAGATGCTTTACTTGAGAGACACATGGAGACAAGGAACC 60
Query 61 ATGATTTGTGACGTCTTACCTATCAACCCTAGCTCCAATGGTGTTTGGCCGCAACAAAAA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 61 ATGATCTGTGACGTCTTACCTATCAACCCTAGCTCCAATGGTGTTTGGCCGGAACCAAAA 120
Query 121 TTCTCAGATCCTAACATCAATGTTCATTTCTGGAATTACGCGTTTCCACACTTGCAAATG 180
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TTCTCAGATCCTAACATTAATGTTCATTTCTGGAATTACACGTTTCCACACTTGCAAATG 180
Query 181 ATATTTCTCATCATCTCTTTCTTATGGCAATTCTTACATTTCTTCCTTCGACGTCTTGGC 240
||||||||||||||||||||| | ||||||||||| ||||||||||| |||||||| |||
Sbjct 181 ATATTTCTCATCATCTCTTTCCTCTGGCAATTCTTGCATTTCTTCCTCCGACGTCTCGGC 240
Query 241 ATGATACGTTTCACTTCTCATATGCTTACTGGTGTTCTTTTAAGCAAGTCTTTTCTAAAG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGATCCGTTTCACTTCTCATATGCTTACTGGTGTTCTTTTAAGCAAGTCTTTTCTAAAG 300
Query 301 GAGAATTCAGCAGCGAGAAGATTCTTTTCTACAGAGGATTACAAAGAGATTGTGTTTAGT 360
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAATTCAGCGGCCAGAAGATTCTTTTCTACAGAGGATTACAAAGAGATTGTGTTTAGT 360
Query 361 CTCACTGCTGCTTGTTCTTACATGATGTTCTGGTTCTTGATGGGAGTTAAAATGGACACG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 CTCACTGCTGCTTGTTCTTACATGATGTTCTGGTTCTTGATGGGAGTTAAAATGGACATG 420
Query 421 GGTTTGATCCGAACCACAGGAAGAAAAGCTATCACCATTGGGCTCTCCTCTGTTTTACTT 480
||||||||||||||||| ||||||||||| || ||||| ||| |||||||||||||||||
Sbjct 421 GGTTTGATCCGAACCACGGGAAGAAAAGCCATTACCATAGGGATCTCCTCTGTTTTACTT 480
Query 481 TCGACGTTAGTTTGTTCCGTTATCTTCTTCGGAAACTTAAGGGACGTTGGAACGAAAAAC 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 481 TCGACGTTAGTTTGTTCCGTTATCTTCTTCGGAAACTTGAGGGACGTTGGAACCAAGAAC 540
Query 541 TCAGACCATACTCTCAATTCATTAGAGTA-TGTTGTGATTTACTCAATCCAATGTCTTTC 599
|| || ||||||||||||||||| ||| | ||||||||||||||| || |||||||||||
Sbjct 541 TCGGATCATACTCTCAATTCATTGGAG-ACTGTTGTGATTTACTCGATTCAATGTCTTTC 599
Query 600 TTCTTTCCCCGTTGTTGGAAACCTTCTCTTTGAGCTCAGGCTACAAAACTCAGAGCTTGG 659
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 600 GTCTTTCCCCGTTGTTGGAAACCTTCTTTTTGAGCTCAGGCTACAGAACTCAGAGCTTGG 659
Query 660 TCGTCTAGCGATATCTTCTGCTGTGATAAGTGATTTCAGCACCTCAATTCTCGCTTCCGT 719
|||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 660 TCGTTTAGCGATGTCTTCTGCTGTGATAAGTGATTTCAGCACCTCGGTTCTCGCTTCTGC 719
Query 720 TCTCATATTTATGAAGGAGCTCAAGGACGAACAAACACGGCTCGGGAGTGTGTTTATAGG 779
|||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 720 TCTCATCTTTATGAAGGAGCTTAAGGACGAACAAACACGGCTCGGGAGCGTGTTTATAGG 779
Query 780 TGATGTTATTGCAGGGAATCGTCCTTTGATGCGAGCAGGGATAGTGGTTCTCTTTGTATG 839
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 780 TGATGTTATTGCTGGGAATCGTCCTTTGAAGCGAGCAGCGATAGTGGTTCTCTTTGTTTG 839
Query 840 TATTGCCATCTATGTTTTCAGACCGTTAATGTTCTACATTATTAAACAAACACCTTCCGG 899
| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||
Sbjct 840 TCTTGCCATCTATGTTTTCAGACCTTTAATGTTCTACATTGTTAAACAAACGCCTTCCGG 899
Query 900 TCGTCCCGTCAAGGCAATCTACTTAAGTACAATAATTGTTATGGTTTCTGGTTCAGCCAT 959
||||||||| |||||||||||||||| |||||| ||||||||||| ||||| ||||||||
Sbjct 900 TCGTCCCGTTAAGGCAATCTACTTAACTACAATCATTGTTATGGTCTCTGGATCAGCCAT 959
Query 960 TCTTGCCAATTGGTGCAAGCAATCTATTTTCATGGGACCTTTCATCTTAGGTCTTGCTGT 1019
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 TCTTGCGAATTGGTGCAAGCAATCTATTTTCATGGGACCTTTCATCTTAGGTCTTGCAGT 1019
Query 1020 TCCTCATGGTCCTCCTTTAGGTTCTGCGATCATTCAGAAGTATGAGTCGGCTATATTCGG 1079
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1020 TCCTCATGGTCCTCCTTTAGGTTCTGCAATCATTCAGAAGTACGAGTCCGCTATATTCGG 1079
Query 1080 AACTTTTCTTCCGTTTTTCATTGCTTCATCTTCCACGGAGATCGATATTTCGGCTTTATT 1139
||||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 1080 AACTTTTATTCCGTTTTTCGTTGCTTCATCTTCCACGGAGATTGACATTTCGGCTTTATT 1139
Query 1140 TGGTTGGGAAGGTCTCAATGGTATTATACTCATCATGGTAACATCTTTTGTCGTCAAGTT 1199
|| |||||||| ||||| ||| ||||| ||||||||| |||||||||| || ||||| ||
Sbjct 1140 TGATTGGGAAGATCTCAGTGGCATTATTCTCATCATGATAACATCTTTCGTTGTCAAATT 1199
Query 1200 CATCTTTACTACTGTTCCTGCTTTGTTCTATGGTATGCCGATGGAAGATTGCTTCGCTCT 1259
|||||| ||||||||| |||||||||||||| |||||||||||||||| ||||||||| |
Sbjct 1200 CATCTTGACTACTGTTGCTGCTTTGTTCTATCGTATGCCGATGGAAGACTGCTTCGCTAT 1259
Query 1260 ATCTCTTATCATGTCGTTTAAAGGCATCTTCGAGCTCGGTGCCTACGCCTTGGCCTACCA 1319
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1260 ATCTCTTATCATGTCTTTTAAAGGCATCTTCGAGCTCGGTGCCTATGCCTTGGCCTACCA 1319
Query 1320 AAGAGGGTCTGTCCGTCCCGAGACCTTCACTGTGGCGTGTCTTTACATAACGTTGAACTC 1379
|||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| ||
Sbjct 1320 AAGAGGGTCTGTCCGTCCAGAGACCTTCACTGTCGCGTGTCTTTACATAATGTTGAATTC 1379
Query 1380 CGCAATCATTCCTCCGATCTTGCGGTACTTATACGATCCTTCGAGGATGTACGCGGGGTA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGCAATCATTCCTCCGATCTTGCGGTACTTATACGATCCTTCGAGGATGTACGCGGGGTA 1439
Query 1440 CGAGAAGCGGAATATGCAGCATTTGAAACCAAACTCTGAGCTAAGGATTCTGTCTTGCAT 1499
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1440 CGAGAAGCGGAATATGCAGCACCTGAAACAAAACTCTGAGCTAAGGATTCTGTCTTGCAT 1499
Query 1500 TTACAGAACTGATGATATAAGTCCAATGATTAATCTTCTTGAAGCTATTTGTCCGTCCCG 1559
||||||||| || ||||||||||||| ||| |||||||| ||||||| ||||||||||||
Sbjct 1500 TTACAGAACCGAAGATATAAGTCCAACGATCAATCTTCTCGAAGCTACTTGTCCGTCCCG 1559
Query 1560 GGAATCTCCTGTAGC-TACCTACGTTCTCCACTTGATGGAGCTTGTAGGACAAGCAAATC 1618
||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1560 GGAATCTCCTGTAGCAT-CCTACGTCCTCCACTTGATGGAGCTGGTAGGACAAGCCAATC 1618
Query 1619 CGATCTTCATTTCACATAAATTGCAAACTCGCAGAACAGAGGAGACGTCTTATTCAAACA 1678
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CGATTTTCATTTCTCACAAATTGCAAACTCGCAGAACAGAGGAGACGTCTTATTCAAACA 1678
Query 1679 ATGTACTTGTCTCCTTTGAAAAGTTTCGTAAAGATTTCTATGGTTCGGTCTTCGTAAGCA 1738
|||||||||||||||||||||| || | |||||||| ||||| |||||||||||||| |
Sbjct 1679 ATGTACTTGTCTCCTTTGAAAAATTCCACAAAGATTTTTATGGCTCGGTCTTCGTAAGTA 1738
Query 1739 CCTACACGGCTTTATCTATGCCCGATACGATGCACGGAGATATATGTATGCTTGCTCTCA 1798
||||||||| ||||||||||| ||||| ||||||||||| || |||||||||||||| |
Sbjct 1739 TCTACACGGCCTTATCTATGCCTGATACAATGCACGGAGACATCTGTATGCTTGCTCTTA 1798
Query 1799 ACAACACTACTTCTCTCATACTCCTTCCTTTTCACCAGACTTGGTCTGCTGACGGATCAG 1858
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1799 ACAACACTACTTCCCTCATACTCCTTCCTTTTCACCAAACTTGGTCTGCTGACGGATCCG 1858
Query 1859 CTCTTATCTCTAACAATAACATGATCCGGAACCTTAACAAGAGCGTTCTCGACGTGGCAC 1918
|||| ||||| |||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1859 CTCTCATCTCAAACAGCAACATGATCAGGAACCTTAACAAGAGCGTTCTCGACGTGGCAC 1918
Query 1919 CTTGTTCTGTCGGAGTCTTTGTATACCGAAGCAGTTCCGGACGGAAAAACATCAGTTCCG 1978
| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1919 CGTGTTCTGTCGGAATCTTTGTATACCGAAGCAGTTCCGGACGGA---------G----- 1964
Query 1979 GACGGAAAACCATCAATGGCACAGTTCCAAACTTATCATCTTACAATATTTGTATGATCT 2038
| | ||||||||| ||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 1965 -A---A---CCATCAATGACACCGTTTCAAACTTATCATCTTACAATATATGTATGATCT 2017
Query 2039 TCCTAGGCGGTAAAGACGATAGAGAAGCAGTGACACTTGCTACACGAATGGCCCGTGACC 2098
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2018 TCCTAGGCGGTAAAGACGATAGAGAAGCAGTGACACTTGCAACACGAATGGCCCGTGACC 2077
Query 2099 CAAGGATCAATATAACCATTGTTCGACTGATCACTACCGATGAGAAAGCACGAGAGAACA 2158
| || ||||| ||||| |||| ||| |||||||||||||||||||||||||||| |||
Sbjct 2078 CGAGAATCAACATAACTGTTGTCCGAATGATCACTACCGATGAGAAAGCACGAGAAAACT 2137
Query 2159 CGGTGTGGGATAAAATGCTTGACGATGAACTTCTTAGAGACGTGAAAAGCAATACATTAG 2218
| | ||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct 2138 CAGAGTGGGATAAAATGCTTGACGATGAAATACTTAGAGAAGTGAAGAGCAATACATTAG 2197
Query 2219 TAGACATTTTCTACTCGGAGAAAGCGATTGAAGACGCGGCTGAAACATCGAGTTTGCT-A 2277
|||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||| |
Sbjct 2198 TAGACATTTTCTACTCGGAGAAAGCGGTTGAAGACGCGTCTGAGACATCGGGTTTGCTGA 2257
Query 2278 AGATCGATGGTAAGCGATTTCGATATGTTCATAGTGGGAAGAGGGAACGGAAGGACGAGT 2337
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 2258 A-ATCGATGGTAAGCGATTTCGATATGTTCATAGTGGGAAGAGGGAAAGGAAGGAAGAGT 2316
Query 2338 GTGTTCACAGAAGGGCTTGAGGAATGGAGTGAGTTTAAGGAGCTTGGTATTATTGGAGAT 2397
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2317 GTGTTCACAGATGGGCTTGAGGAATGGAGTGAGTTTAAGGAGCTTGGTATTATTGGGGAC 2376
Query 2398 TTATTGACTTCACAGGATTTTAATTGCCAAGCTTCTGTTTTGGTTATACAACAACAACAG 2457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 TTATTGACTTCACAGGATTTTAATTGCCAAGCTTCTGTTTTGGTTATACAACAACAACAA 2436
Query 2458 CTAATGATTTAG 2469
|| |||||||||
Sbjct 2437 CTTATGATTTAG 2448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93054468535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5