BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22920.1
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489147 jgi|Araly1|489147|fgenesh2_kg.6__2281__AT5G22920.1 1722 0.0
> Ahg489147 jgi|Araly1|489147|fgenesh2_kg.6__2281__AT5G22920.1
Length=1172
Score = 1722 bits (932), Expect = 0.0
Identities = 1116/1199 (93%), Gaps = 35/1199 (3%)
Strand=Plus/Plus
Query 12 CTTCCTCTGTTTCTGATTACCAAACGTCGTCAATACATTTCTTCAAATTACGTTTCTTTT 71
||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 CTTCCCCTGATTCTGATTACCAAAC-T--TCAATACATTTCTTCAAATTACGTTTCTTTT 57
Query 72 ATTCTTTCGTTACTCT-CAACAAATTT-TGATATCTGATTGGTGTTGATTCCAAGTAAGA 129
| |||||||||||||| ||| ||||| | |||||||||| ||||| || ||||||||
Sbjct 58 AATCTTTCGTTACTCTCCAA-GAATTTCT-TTATCTGATTGATGTTGTTTTGAAGTAAGA 115
Query 130 AAGATCAAAACTTTAGGTAAAGTATGGATATGGGTTTCCATGAAAATGAGCAAAATCAAG 189
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 116 AAGATCAAAACTTTAAGTAAA-TATGGAGATGGGTTTCCATGAAAATGAGCAAAATCAAG 174
Query 190 AATTTGCGAATCTAATGGAGATTGGATCTGGGCATTACGGGTGTTCACATTATAGAAGAC 249
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 175 AATTTGCGAATCTAATGGAGATTGGATCTGGGCATTACGGGTGCTCACATTATAGAAGAC 234
Query 250 GATGCAAGATTAGAGCACCATGTTGTGATGAGATTTTTGATTGCAGACATTGCCACAACG 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 GATGCAAGATTAGAGCACCATGTTGTGATGAGATTTTTGATTGCAGACATTGCCACAACG 294
Query 310 AAGCTAAGGATTCTCTTCATATTGAACAGCATCATAGACATGAGCTTCCTCGACATGAAG 369
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 295 AAGCTAAGGATTCTCTTCATATTGAACAGCATCATAGACATGAACTTCCTCGGCATGAAG 354
Query 370 TTTCAAAGGTCATATGCTCGCTTTGTGAGACAGAACAAGACGTTCA-GCAAAACTGCTCC 428
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 355 TTTCAAAGGTCATATGCTCTCTTTGTGAGACAGAACAAGACGT-CAAGCAAAACTGCTCC 413
Query 429 AATTGTGGTGTATGTATGGGGAAGTACTTCTGTTCAAAATGCAAGTTCTTCGACGATGAT 488
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 414 AACTGTGGTGTATGTATGGGGAAGTACTTCTGCTCGAAATGCAAGTTCTTCGACGATGAT 473
Query 489 CTTTCCAAGAAGCAATATCACTGTGATGAGTGTGGGATTTGCAGGACCGGAGGAGAAGAA 548
||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 474 CTTTCCAAGAAGCAATATCACTGCGATGATTGTGGGATTTGCCGGACCGGAGGAGAAGAA 533
Query 549 AACTTTTTCCATTGCAAAAGATGCCGATGTTGCTACTCCAAAATTATGGAGGACAAACAC 608
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 534 AACTTTTTCCATTGCAAAAGATGTCGATGTTGCTACTCCAAAATTATGGAGGACAAACAC 593
Query 609 CAATGTGTTGAAGGCGCTATGCATCACAATTGCCCGGTTTGTTTTGAGTATCTGTTTGAT 668
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 CGATGTGTTGAAGGCGCAATGCATCACAATTGCCCGGTTTGTTTTGAGTATCTGTTTGAT 653
Query 669 TCAACAAGAGATATCACTGTCCTACGATGTGGTCACACTATGCATCTAGAATGCACGAAA 728
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 654 TCCACAAGAGATATCACGGTCCTACGATGTGGTCACACTATGCATTTAGAATGCACGAAA 713
Query 729 GATATGGGGCTACATAACCGATACACATGCCCTGTATGCTCCAAATCCATATGTGACATG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GATATGGGGCTACATAACCGATACACATGCCCTGTATGCTCCAAATCCATATGTGACATG 773
Query 789 TCTAATCTGTGGAAGAAACTTGATGAAGAGGTTGCTGCATACCCAATGCCAAAGATGTAT 848
|| ||| |||||||||||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct 774 TCCAATTTGTGGAAGAAACTTGATGAAGAGGTTGCCGCATACCCAATGCTAAAGTTGTAT 833
Query 849 GAAAACAAGATGGTATGGATTCTCTGCAATGACTGCGGCTCAAACACGAACGTTCGGTTT 908
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 834 GAAAACAAGATGGTATGGATTCTTTGCAATGACTGTGGCTCAAACACGAACGTTCGGTTT 893
Query 909 CATTTGATCGCGCATAAATGCAGTAGCTGTGGTTCCTACAATACAAGACAGACACAGAGA 968
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 894 CATTTGATCGCGCATAAATGCAGTAGCTGCGGTTCCTACAACACAAGACAGACGCAGAGA 953
Query 969 GGCTCTGATAGTCACTCTTGCTCCTCTGGAATGCCTCAGGTTGTTGGTTCAACCGGTTAA 1028
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 954 GGCTCTGATAGTCACTCTTGCTCCTCTGGAATGCTTCAGGTTGTTGGTTCAACTGGTTAA 1013
Query 1029 TT--T---TTAACCAGAGCTGGTTTTGGTGTCTGAATTTCCCATGAGGAGATTATTTGTA 1083
| | |||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1014 GTAATACATTAACCAGAGATGGTTTTGGTGTCTAAATTTCCCAAGAGGAGATTATTTGTA 1073
Query 1084 CTTTCTATAGTTTGGTATCAGTCAATGCCTTTGGTTGTTAACAATTATATCATCACAGAT 1143
|| || |||||||||||| |||||||| | ||||||||| ||||
Sbjct 1074 CT----AT----------CAGTCAATGCCTCTGGTTGTT-----T-ATATCATCAGAGAT 1113
Query 1144 TCAAAAGCTGCTTTGAGCCAATCCAACTTGCAAGTCTAGACCATTATAGCCCAAAACAA 1202
||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1114 TCATAAGCTGCTTTGAGCCAATCCTACTCGCAAGTCTAGACCATTATAGCCCAAAACAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5