BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22930.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351315 jgi|Araly1|351315|fgenesh1_pg.C_scaffold_6001908 1147 0.0
> Ahg351315 jgi|Araly1|351315|fgenesh1_pg.C_scaffold_6001908
Length=717
Score = 1147 bits (621), Expect = 0.0
Identities = 685/717 (96%), Gaps = 0/717 (0%)
Strand=Plus/Plus
Query 1 ATGGATAACCAAAGCAATGCTCTTCTTGGTTGGCCTTACTACTCTCACGCAAAGACAACA 60
||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||
Sbjct 1 ATGGATAACCAAAGCAATGCTCTTCTTGGATGGTCTTACTACTCCCACGCAAAGACAACA 60
Query 61 GAAGAAATAAGACAGTCTCTACTGTACACAACACTAGAGCTGGACCAAACAAAGATGTTT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GAAGAAATAAGACAGTCTCTACTGTACACAACACTAGAGCTCGACCAAACAAAGATGTTT 120
Query 121 GCTTATGAAGAAATAAGGAAAAGAGACGAGCAATTGATCCATCTCAAAGACATCTTAACC 180
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 121 GCTTATGAAGAAATAAGGAAAAGAGATGAGCAATTGATCCATCTCAAAGACATCATAACC 180
Query 181 AAAACCATCAAAGAAAGAGACGAAGCTCTCGAGAAATGTCAGCGTCTCATGTTCGATAGC 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AAAACCATCAAAGAAAGAGATGAAGCTCTCGAGAAATGTCAGCGTCTCATGTTCGATAAC 240
Query 241 CACTCGCTTCAGCAGCAAAAGCATATGACTCCTCCTTTATCTGGAGCTTCAAGCATTGAA 300
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CACTCGCTACAGCAACAAAAGCATATGACTCCTCCTTTATCTGGAGCTTCAAGCATTGAA 300
Query 301 GACGAACAAGTGCAGCCTCAACAACTAAGATCCAACAAGAGCTTCTCATCTTCTGATTGC 360
||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 301 GACGAGCAAGTGCAGCCTCAACAACTAGGATCCAACAAGAGCTTCTCATCATCTGATTGC 360
Query 361 GAGGAGAGCATTATGTCACCAACTGATCATATCATGAATCCACCACCATGTCAGCTTGAA 420
|||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 361 GAGGAGAGCATTATGTCACCCACTGATCATGTCATGAATCCACCACCATCTCAGCTTGAA 420
Query 421 GAAGTCTCAGGAACTGAGATTATCATGGATCCATTGTTGCAAGACAAGCCACTGCCTGAG 480
||||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||||
Sbjct 421 GAAGTGTCAGGAACTGAGATTATTATGGATCCATTGTTTCCAGACAAACCATTGCCTGAA 480
Query 481 AAGGGTAAGCTTTTACAAGCTGTTATTAAGGCAGGGCCTTTACTTCAGACACTGCTCTTA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AAGGGTAAGCTTTTACAGGCTGTTATTAAGGCAGGGCCTTTACTTCAGACACTTCTCTTA 540
Query 541 GCTGGTCCATTACCTCAATGGCGCCATCCGCCACCGCCTCTCAAGAGCTTCGAGATCCCT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GCTGGTCCATTACCTCAATGGCGCCACCCGCCACCGCCTCTCAAGAGCTTCGAGATCCCT 600
Query 601 CCGGTCACAGTCCAATGCCCAATTGTCAACAATGGATGTGGGAAGTTCAACAGGAAAAGA 660
|| ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 601 CCAGTCACAGTCCAATGCCCCATTGTCAACAATGGGTGTGGGAAATTCAACAGGAAAAGA 660
Query 661 GTATTCTCAGATGGATCCTATTCAGAAGCTAAGTATCAGAAAGTTCTTCTCCAATGA 717
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GTCTTCTCAGATGGATCCTATTCAGAAGCTAAGTATCAGAAAGTTCTTCTCCATTGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5