BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22940.1
Length=1956
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489149 jgi|Araly1|489149|fgenesh2_kg.6__2283__AT5G22940.1 2883 0.0
Ahg938052 jgi|Araly1|938052|scaffold_502243.1 455 6e-127
> Ahg489149 jgi|Araly1|489149|fgenesh2_kg.6__2283__AT5G22940.1
Length=1952
Score = 2883 bits (1561), Expect = 0.0
Identities = 1839/1969 (93%), Gaps = 35/1969 (2%)
Strand=Plus/Plus
Query 1 GCCGAGCTCTATTCTGCTCCATTGCCCATCACCATGTGACGACCTTCTCTCTCTAAATTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCGAGCTCTATTCTGCTCCATTG-CCATCACCATGTGACGACCTTCTCTCTCTAAATTC 59
Query 61 TCTCTGTACTCTGaaaaaaa---CTCttt-ttttttttGTGTGGGTTTCTTAATGATTTG 116
|||||||||||||||||||| ||||| |||||||| | | |||||||||||||||||
Sbjct 60 TCTCTGTACTCTGAAAAAAATTGTTCTTTATTTTTTTT-TTTTGGTTTCTTAATGATTTG 118
Query 117 TTATGACCCTGTTGGATTCAAACCAAACCCACACGAGAGAATGATGAGAAGTAGATCACC 176
|||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 119 TTATAACCTTGTTGGATTCAAACCAAACCTACACGAGAGAATGATGAGAAGTAGATCACC 178
Query 177 GGTTTTG-T---AATTCTTTCAACGACTCTTTCTCTACATTTCTCCCAAATCTCTGTCTC 232
| ||||| | ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 179 GATTTTGTTCCAAATACATTCAACGACTCTTTCTCTACATTTCTCCCAAATCTCTG---- 234
Query 233 TTGAGTTTGATTTAGCTAAATCAAGCAATGTCGCTTGACATAAAGAAACCGAACATCACC 292
|||| | ||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 235 TTGA---T--TTT-GCTAAATCAAGCAATGTCGCTTGACATAAAGAGACCGAACATCAAC 288
Query 293 AAGACGAAGAAGAAGAAGACAGGTTTCGTCGTAAAAATGCAGCTTAAT---AACAACAGA 349
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 289 AAGACGAAGAAGAAGAAGACAGGTTTCGTCGTGAAAATGCAGCTTAATAACAACAACAGA 348
Query 350 GGAGGAAATAAAAGAAACATCTTTATCTTCTTCTTCTTCAGAAACTATTACACATGGATC 409
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 349 GGAGGAAATAAAAGAAACATCTTTATCTTCTTCTTCTTCAGAAATTATTACACATGGATC 408
Query 410 CTCTGGTTTTGCCTCTCTCTGTATTTCTTCACATCTTACTTCTCCGTCGAAGACCAATCC 469
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 409 CTCTGGTTTTTCCTCTCTCTTTATTTCTTCACATCTTACTTCTCCGTCGAAGACCAATCC 468
Query 470 TCACCGTCGTCAATACGTCTCTTGTCTAACCACAAAACGTCGTCGTCTCTCCCATCTCGT 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CCACCGTCGTCAATACGTCTCTTGTCTAACCACAAAACGTCGTCGTCTCTCCCATCTCGT 528
Query 530 GCTCTCATCGAATCTTCCGCCATTAAAACCACCTCCATTGGTTTGTTCACCGGAATGAAG 589
||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||
Sbjct 529 GCTCTCATCGAATCTTCCGCCATTAAAACCAACTCCTTTGGTTTATTCAGCGGAATGAAG 588
Query 590 ATATACGTTTACGATTTACCGGCGAGTTATAACGACGATTGGGTTACAGCATCAGACCGT 649
||||| |||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 589 ATATATGTTTACGATTTACCGGCGAGTTTTAACGACGATTGGGTCACGGCATCAGACCGG 648
Query 650 TGCGCTAGC-CACCTCTTCGCGGCGGAGGTAGCTATCCACCGTGCACTTCTCTCCTCCGA 708
||||||| | || || || |||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 649 TGCGCTA-CTCATCTTTTTGCGGCGGAGGTAGCCATCCATCGTGCGCTTCTCTCCTCCGA 707
Query 709 CGTCCGTACGTTAGACCCAGATGAAGCTGATTACTTCTTCGTCCCTGTCTACGTTTCTTG 768
||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 708 CGTCCGTACGTTAGACCCAGAAGAAGCTGATTTCTACTTCGTCCCTGTCTACGTTTCTTG 767
Query 769 CAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCACGCTCGCTCTCTCCTTAGCTC 828
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 CAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCACGCTCGCTCTCTCCTCAGCTC 827
Query 829 CGCCGTCGATTTTCTCTCCGATCATTACCCATTTTGGAA-CAGGAGTCAAGGCTCTGACC 887
||||||||||||||||||||| |||||||| |||||||| | ||| ||||||| ||||||
Sbjct 828 CGCCGTCGATTTTCTCTCCGACCATTACCCGTTTTGGAATC-GGACTCAAGGCGCTGACC 886
Query 888 ACGTCTTCGTCGCTTCCCATGACTTTGGCGCATGCTTCCACGCAATGGAGGATATGGCTA 947
| ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 887 ATGTCTTTGTCGCTTCCCATGACTTTGGTGCGTGCTTTCACGCAATGGAGGATATGGCGA 946
Query 948 TAGAGGAAGGGATTCCAAAATTTATGAAGAGATCAATAATTTTACAAACGTTTGGAGTTA 1007
||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 947 TAGAGGAAGGGATTCCAGAATTTCTGAAGAAATCGATAATTTTACAAACGTTTGGAGTTA 1006
Query 1008 AGTACAAGCATCCATGTCAAGAAGTGGAACATGTTGTGATTCCTCCTTATATTCCACCGG 1067
| ||||| ||||||||||||||||||||||||||||| || || || |||||||| ||||
Sbjct 1007 AATACAATCATCCATGTCAAGAAGTGGAACATGTTGTTATCCCGCCGTATATTCCGCCGG 1066
Query 1068 AGAGTGTTCAAAAAGCTATTGAAAAAGCTCCGGTGAACGGACGGCGAGACATTTGGGCGT 1127
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1067 AGAGTGTTCAAAGAGCTATTGAAAAAGCTCCGGCGAACGGACGGCGAGACATTTGGGCAT 1126
Query 1128 TTTTCCGGGGAAAAATGGAAGTCAACCCTAAGAATATTAGCGGACGCTTTTACAGCAAGG 1187
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1127 TTTTCCGGGGAAAAATGGAAGTCAACCCTAAGAATATAAGCGGACGCTTTTACAGCAAGG 1186
Query 1188 GAGTGAGAACGGCGATTCTAAAGAAATTCGGAGGAAGAAGGCGGTTTTATCTAAACCGGC 1247
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 1187 GAGTGAGAACGGCGATTCTAAAGAAATACGGAGGGAGAAGGCGGTTTTATCTTAACCGGC 1246
Query 1248 ACCGGTTTGCTGGATACCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTTTAG 1307
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1247 ACCGGTTTGCTGGATATCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTCTCG 1306
Query 1308 GGTGGGCACCATGGAGTCCTAGACTAGTGGAATCCGCCGTGTTAGGTTGTGTTCCCGTTG 1367
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1307 GGTGGGCACCATGGAGTCCTAGGCTAGTGGAATCCGCCGTGTTAGGTTGTGTTCCCGTTG 1366
Query 1368 TTATCGCCGATGGGATTCAA-TTACCGTTCTCGGAGACGGTACAATGGCCGGAAATCTCA 1426
||||||||||||||||| || |||||||||||||||||||||| |||||||| || |||
Sbjct 1367 TTATCGCCGATGGGATT-AAGTTACCGTTCTCGGAGACGGTACGGTGGCCGGAGATATCA 1425
Query 1427 CTAACGGTGGCGGAGAAAGACGTGAGGAATCTACGAAAGGTTTTGGAACACGTGGCGGCT 1486
|| ||||||||||| ||||||||||||| |||||||||| |||| |||||||||||||||
Sbjct 1426 CTTACGGTGGCGGAAAAAGACGTGAGGAGTCTACGAAAGATTTTAGAACACGTGGCGGCT 1485
Query 1487 ACTAATTTGTCTGCAATACAAAGAAACTTACATGAACCGGTGTTTAAGCGGGCCCTCTTG 1546
||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 1486 ACTAATTTGTCTGTGATTCAGAGAAACTTACATGAACCGGTGTTTAAGCGGGCCCTCTTG 1545
Query 1547 TACAATGTGCCGATGAAAGAAGGAGACGCCACGTGGCATATTCTCGAGTCGTTGTGGAGG 1606
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1546 TACAATGTGCCGATGAAAGAAGGAGACGCCACGTGGCATATTCTCGAGTCGTTGCGGAGG 1605
Query 1607 AAGCTCGATGATCGGTCGTACAGAAGGTCAAGGGTTTTAAGCCAACGAGAAGTCGACATG 1666
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |
Sbjct 1606 AAGCTCGATGATCGGTCGTACAGAAGGTCAACGGTTTTAAGGCAATGAGAAGTCGACACG 1665
Query 1667 TAGGATTCTGTGTCTGAATGGATGCTAGGCTGGAATTTTTCGGACTGTTTCGGAATTGGT 1726
|| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 TAAGATTCTATGTCTAAATGGATGCTAGGCTGGAATTTTTCGGACTGTTTCGGAATTGGT 1725
Query 1727 TAACCGGGAATGTCTCGAGTGGGGTCCACAACGTGAGGGG-ATTAACTCGGGCACGTGAG 1785
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1726 AAACCGGGAATGTCTCGAGTGGGGTCCACAACGTGAGGGGGATTAACTCGGGCACGTGAG 1785
Query 1786 ATGTTTACTGAGCTGGCAATTATTGAGTGGAATATTAACGTGCCCCAGGGAAGTGAAAGT 1845
|||||| ||||| |||| |||| |||||||| | | ||||||||||||||||||||||||
Sbjct 1786 ATGTTTGCTGAGTTGGCGATTACTGAGTGGA-T-T-AACGTGCCCCAGGGAAGTGAAAGT 1842
Query 1846 GTAAAGTATTGCTGACGTGTAATTCTTTTGATGAGTAGGCATATAAATTCTTTTGAATAT 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 GTAAAGTATTGCTGACGTGTAATTCTTTTGATGAGTAGGCATATAAATTCTTTTGAATAT 1902
Query 1906 A--GTTGATCGAAATGCAAAGTTATATCAAATGTCAACTTCAGTTTAAC 1952
| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1903 AAAGTTGATCGAAATGCAAAGTTAAATCAAATCTCAACTTCAGTTTAAC 1951
> Ahg938052 jgi|Araly1|938052|scaffold_502243.1
Length=368
Score = 455 bits (246), Expect = 6e-127
Identities = 309/339 (91%), Gaps = 6/339 (2%)
Strand=Plus/Plus
Query 569 GGTTTGTTCACCGGAATGAAGATATACGTTTACGATTTACCGGCGAGTTATAACGACGAT 628
||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 10 GGTTTATTCAGCGGAATGAAGATATATGTTTACGATTTACCGGCGAGTTTTAACGACGAT 69
Query 629 TGGGTTACAGCATCAGACCGTTGCGCTAGC-CACCTCTTCGCGGCGGAGGTAGCTATCCA 687
|||||||| ||||||||||| ||||||| | || || || |||||||||||||| |||||
Sbjct 70 TGGGTTACGGCATCAGACCGGTGCGCTA-CTCATCTTTTTGCGGCGGAGGTAGCCATCCA 128
Query 688 CCGTGCACTTCTCTCCTCCGACGTCCGTACGTTAGACCCAGATGAAGCTGATTACTTCTT 747
|||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 129 CCGTACGCTTCTCTCCTCCGACGTCCGTACGTTAGACCCAGAAGAAGCTGATTTCTTCTT 188
Query 748 CGTCCCTGTCTACGTTTCTTGCAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCA 807
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 189 CGTCCCTGTTTACGTTTCTTGCAATTTCTCCAAATCCAACGGCTTCCCTTCTCTAAGCCA 248
Query 808 CGCTCGCTCTCTCCTT-AGCTCCGCCGTCGATTTTCTCTCCGATCATTACCCATTTTGGA 866
|||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 249 TGCTCGCTCTCTC-TTCAGCTCCGCCGTCGATTTTCTCTCCGACCATTACCCGTTTTGGG 307
Query 867 A-CAGGAGTCAAGGCTCTGACCACGTCTTCGTCGCTTCC 904
| | ||| ||||||||||||||| || || |||||||||
Sbjct 308 ATC-GGACTCAAGGCTCTGACCATGTTTTTGTCGCTTCC 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73514172850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5