BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22940.1 Length=1956 Score E Sequences producing significant alignments: (Bits) Value Ahg489149 jgi|Araly1|489149|fgenesh2_kg.6__2283__AT5G22940.1 2883 0.0 Ahg938052 jgi|Araly1|938052|scaffold_502243.1 455 6e-127 > Ahg489149 jgi|Araly1|489149|fgenesh2_kg.6__2283__AT5G22940.1 Length=1952 Score = 2883 bits (1561), Expect = 0.0 Identities = 1839/1969 (93%), Gaps = 35/1969 (2%) Strand=Plus/Plus Query 1 GCCGAGCTCTATTCTGCTCCATTGCCCATCACCATGTGACGACCTTCTCTCTCTAAATTC 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GCCGAGCTCTATTCTGCTCCATTG-CCATCACCATGTGACGACCTTCTCTCTCTAAATTC 59 Query 61 TCTCTGTACTCTGaaaaaaa---CTCttt-ttttttttGTGTGGGTTTCTTAATGATTTG 116 |||||||||||||||||||| ||||| |||||||| | | ||||||||||||||||| Sbjct 60 TCTCTGTACTCTGAAAAAAATTGTTCTTTATTTTTTTT-TTTTGGTTTCTTAATGATTTG 118 Query 117 TTATGACCCTGTTGGATTCAAACCAAACCCACACGAGAGAATGATGAGAAGTAGATCACC 176 |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 119 TTATAACCTTGTTGGATTCAAACCAAACCTACACGAGAGAATGATGAGAAGTAGATCACC 178 Query 177 GGTTTTG-T---AATTCTTTCAACGACTCTTTCTCTACATTTCTCCCAAATCTCTGTCTC 232 | ||||| | ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 179 GATTTTGTTCCAAATACATTCAACGACTCTTTCTCTACATTTCTCCCAAATCTCTG---- 234 Query 233 TTGAGTTTGATTTAGCTAAATCAAGCAATGTCGCTTGACATAAAGAAACCGAACATCACC 292 |||| | ||| |||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 235 TTGA---T--TTT-GCTAAATCAAGCAATGTCGCTTGACATAAAGAGACCGAACATCAAC 288 Query 293 AAGACGAAGAAGAAGAAGACAGGTTTCGTCGTAAAAATGCAGCTTAAT---AACAACAGA 349 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 289 AAGACGAAGAAGAAGAAGACAGGTTTCGTCGTGAAAATGCAGCTTAATAACAACAACAGA 348 Query 350 GGAGGAAATAAAAGAAACATCTTTATCTTCTTCTTCTTCAGAAACTATTACACATGGATC 409 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 349 GGAGGAAATAAAAGAAACATCTTTATCTTCTTCTTCTTCAGAAATTATTACACATGGATC 408 Query 410 CTCTGGTTTTGCCTCTCTCTGTATTTCTTCACATCTTACTTCTCCGTCGAAGACCAATCC 469 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 409 CTCTGGTTTTTCCTCTCTCTTTATTTCTTCACATCTTACTTCTCCGTCGAAGACCAATCC 468 Query 470 TCACCGTCGTCAATACGTCTCTTGTCTAACCACAAAACGTCGTCGTCTCTCCCATCTCGT 529 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 CCACCGTCGTCAATACGTCTCTTGTCTAACCACAAAACGTCGTCGTCTCTCCCATCTCGT 528 Query 530 GCTCTCATCGAATCTTCCGCCATTAAAACCACCTCCATTGGTTTGTTCACCGGAATGAAG 589 ||||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||| Sbjct 529 GCTCTCATCGAATCTTCCGCCATTAAAACCAACTCCTTTGGTTTATTCAGCGGAATGAAG 588 Query 590 ATATACGTTTACGATTTACCGGCGAGTTATAACGACGATTGGGTTACAGCATCAGACCGT 649 ||||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||| Sbjct 589 ATATATGTTTACGATTTACCGGCGAGTTTTAACGACGATTGGGTCACGGCATCAGACCGG 648 Query 650 TGCGCTAGC-CACCTCTTCGCGGCGGAGGTAGCTATCCACCGTGCACTTCTCTCCTCCGA 708 ||||||| | || || || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct 649 TGCGCTA-CTCATCTTTTTGCGGCGGAGGTAGCCATCCATCGTGCGCTTCTCTCCTCCGA 707 Query 709 CGTCCGTACGTTAGACCCAGATGAAGCTGATTACTTCTTCGTCCCTGTCTACGTTTCTTG 768 ||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| Sbjct 708 CGTCCGTACGTTAGACCCAGAAGAAGCTGATTTCTACTTCGTCCCTGTCTACGTTTCTTG 767 Query 769 CAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCACGCTCGCTCTCTCCTTAGCTC 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 768 CAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCACGCTCGCTCTCTCCTCAGCTC 827 Query 829 CGCCGTCGATTTTCTCTCCGATCATTACCCATTTTGGAA-CAGGAGTCAAGGCTCTGACC 887 ||||||||||||||||||||| |||||||| |||||||| | ||| ||||||| |||||| Sbjct 828 CGCCGTCGATTTTCTCTCCGACCATTACCCGTTTTGGAATC-GGACTCAAGGCGCTGACC 886 Query 888 ACGTCTTCGTCGCTTCCCATGACTTTGGCGCATGCTTCCACGCAATGGAGGATATGGCTA 947 | ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||| | Sbjct 887 ATGTCTTTGTCGCTTCCCATGACTTTGGTGCGTGCTTTCACGCAATGGAGGATATGGCGA 946 Query 948 TAGAGGAAGGGATTCCAAAATTTATGAAGAGATCAATAATTTTACAAACGTTTGGAGTTA 1007 ||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||||| Sbjct 947 TAGAGGAAGGGATTCCAGAATTTCTGAAGAAATCGATAATTTTACAAACGTTTGGAGTTA 1006 Query 1008 AGTACAAGCATCCATGTCAAGAAGTGGAACATGTTGTGATTCCTCCTTATATTCCACCGG 1067 | ||||| ||||||||||||||||||||||||||||| || || || |||||||| |||| Sbjct 1007 AATACAATCATCCATGTCAAGAAGTGGAACATGTTGTTATCCCGCCGTATATTCCGCCGG 1066 Query 1068 AGAGTGTTCAAAAAGCTATTGAAAAAGCTCCGGTGAACGGACGGCGAGACATTTGGGCGT 1127 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1067 AGAGTGTTCAAAGAGCTATTGAAAAAGCTCCGGCGAACGGACGGCGAGACATTTGGGCAT 1126 Query 1128 TTTTCCGGGGAAAAATGGAAGTCAACCCTAAGAATATTAGCGGACGCTTTTACAGCAAGG 1187 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1127 TTTTCCGGGGAAAAATGGAAGTCAACCCTAAGAATATAAGCGGACGCTTTTACAGCAAGG 1186 Query 1188 GAGTGAGAACGGCGATTCTAAAGAAATTCGGAGGAAGAAGGCGGTTTTATCTAAACCGGC 1247 ||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| Sbjct 1187 GAGTGAGAACGGCGATTCTAAAGAAATACGGAGGGAGAAGGCGGTTTTATCTTAACCGGC 1246 Query 1248 ACCGGTTTGCTGGATACCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTTTAG 1307 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | | Sbjct 1247 ACCGGTTTGCTGGATATCGATCAGAAATCGTGAGATCAGTGTTTTGTCTCTGTCCTCTCG 1306 Query 1308 GGTGGGCACCATGGAGTCCTAGACTAGTGGAATCCGCCGTGTTAGGTTGTGTTCCCGTTG 1367 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1307 GGTGGGCACCATGGAGTCCTAGGCTAGTGGAATCCGCCGTGTTAGGTTGTGTTCCCGTTG 1366 Query 1368 TTATCGCCGATGGGATTCAA-TTACCGTTCTCGGAGACGGTACAATGGCCGGAAATCTCA 1426 ||||||||||||||||| || |||||||||||||||||||||| |||||||| || ||| Sbjct 1367 TTATCGCCGATGGGATT-AAGTTACCGTTCTCGGAGACGGTACGGTGGCCGGAGATATCA 1425 Query 1427 CTAACGGTGGCGGAGAAAGACGTGAGGAATCTACGAAAGGTTTTGGAACACGTGGCGGCT 1486 || ||||||||||| ||||||||||||| |||||||||| |||| ||||||||||||||| Sbjct 1426 CTTACGGTGGCGGAAAAAGACGTGAGGAGTCTACGAAAGATTTTAGAACACGTGGCGGCT 1485 Query 1487 ACTAATTTGTCTGCAATACAAAGAAACTTACATGAACCGGTGTTTAAGCGGGCCCTCTTG 1546 ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 1486 ACTAATTTGTCTGTGATTCAGAGAAACTTACATGAACCGGTGTTTAAGCGGGCCCTCTTG 1545 Query 1547 TACAATGTGCCGATGAAAGAAGGAGACGCCACGTGGCATATTCTCGAGTCGTTGTGGAGG 1606 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1546 TACAATGTGCCGATGAAAGAAGGAGACGCCACGTGGCATATTCTCGAGTCGTTGCGGAGG 1605 Query 1607 AAGCTCGATGATCGGTCGTACAGAAGGTCAAGGGTTTTAAGCCAACGAGAAGTCGACATG 1666 ||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| | Sbjct 1606 AAGCTCGATGATCGGTCGTACAGAAGGTCAACGGTTTTAAGGCAATGAGAAGTCGACACG 1665 Query 1667 TAGGATTCTGTGTCTGAATGGATGCTAGGCTGGAATTTTTCGGACTGTTTCGGAATTGGT 1726 || |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1666 TAAGATTCTATGTCTAAATGGATGCTAGGCTGGAATTTTTCGGACTGTTTCGGAATTGGT 1725 Query 1727 TAACCGGGAATGTCTCGAGTGGGGTCCACAACGTGAGGGG-ATTAACTCGGGCACGTGAG 1785 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1726 AAACCGGGAATGTCTCGAGTGGGGTCCACAACGTGAGGGGGATTAACTCGGGCACGTGAG 1785 Query 1786 ATGTTTACTGAGCTGGCAATTATTGAGTGGAATATTAACGTGCCCCAGGGAAGTGAAAGT 1845 |||||| ||||| |||| |||| |||||||| | | |||||||||||||||||||||||| Sbjct 1786 ATGTTTGCTGAGTTGGCGATTACTGAGTGGA-T-T-AACGTGCCCCAGGGAAGTGAAAGT 1842 Query 1846 GTAAAGTATTGCTGACGTGTAATTCTTTTGATGAGTAGGCATATAAATTCTTTTGAATAT 1905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1843 GTAAAGTATTGCTGACGTGTAATTCTTTTGATGAGTAGGCATATAAATTCTTTTGAATAT 1902 Query 1906 A--GTTGATCGAAATGCAAAGTTATATCAAATGTCAACTTCAGTTTAAC 1952 | ||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1903 AAAGTTGATCGAAATGCAAAGTTAAATCAAATCTCAACTTCAGTTTAAC 1951 > Ahg938052 jgi|Araly1|938052|scaffold_502243.1 Length=368 Score = 455 bits (246), Expect = 6e-127 Identities = 309/339 (91%), Gaps = 6/339 (2%) Strand=Plus/Plus Query 569 GGTTTGTTCACCGGAATGAAGATATACGTTTACGATTTACCGGCGAGTTATAACGACGAT 628 ||||| |||| ||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 10 GGTTTATTCAGCGGAATGAAGATATATGTTTACGATTTACCGGCGAGTTTTAACGACGAT 69 Query 629 TGGGTTACAGCATCAGACCGTTGCGCTAGC-CACCTCTTCGCGGCGGAGGTAGCTATCCA 687 |||||||| ||||||||||| ||||||| | || || || |||||||||||||| ||||| Sbjct 70 TGGGTTACGGCATCAGACCGGTGCGCTA-CTCATCTTTTTGCGGCGGAGGTAGCCATCCA 128 Query 688 CCGTGCACTTCTCTCCTCCGACGTCCGTACGTTAGACCCAGATGAAGCTGATTACTTCTT 747 |||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 129 CCGTACGCTTCTCTCCTCCGACGTCCGTACGTTAGACCCAGAAGAAGCTGATTTCTTCTT 188 Query 748 CGTCCCTGTCTACGTTTCTTGCAATTTCTCCACATCCAACGGCTTCCCTTCTCTAAGCCA 807 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 189 CGTCCCTGTTTACGTTTCTTGCAATTTCTCCAAATCCAACGGCTTCCCTTCTCTAAGCCA 248 Query 808 CGCTCGCTCTCTCCTT-AGCTCCGCCGTCGATTTTCTCTCCGATCATTACCCATTTTGGA 866 |||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| Sbjct 249 TGCTCGCTCTCTC-TTCAGCTCCGCCGTCGATTTTCTCTCCGACCATTACCCGTTTTGGG 307 Query 867 A-CAGGAGTCAAGGCTCTGACCACGTCTTCGTCGCTTCC 904 | | ||| ||||||||||||||| || || ||||||||| Sbjct 308 ATC-GGACTCAAGGCTCTGACCATGTTTTTGTCGCTTCC 345 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73514172850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5