BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22950.1
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489150 jgi|Araly1|489150|fgenesh2_kg.6__2284__AT5G22950.1 1280 0.0
> Ahg489150 jgi|Araly1|489150|fgenesh2_kg.6__2284__AT5G22950.1
Length=832
Score = 1280 bits (693), Expect = 0.0
Identities = 805/855 (94%), Gaps = 24/855 (3%)
Strand=Plus/Plus
Query 68 TCGCAACAATGGAGAGAGTGATGAACATCATAAAGCCAAAACCTGATCCCAAACAACTGT 127
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 TCGCAACAATGGAGAGAGTGATGAACATCATAAAGCCAAAGCCTGATCCCAAACAACTCT 60
Query 128 TGCGTGATTGGCAACGCAAATTACGTCAGGAGTGTCGTAACATCGAACGCCAAATCCGAG 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGCGTGATTGGCAACGCAAATTACGTCAGGAGTGTCGTAACATCGAACGCCAAATCCGAG 120
Query 188 ATATACAGAAAGAAGAGAGAAATGTACAGAAAGCTATTAAAGAAGCTGCAAAGAGGAATG 247
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ATATACAGAAAGAAGAAAGAAATGTACAAAAAGCTATTAAAGAAGCTGCAAAGAGGAATG 180
Query 248 ATATGGTCTCTGCTAAGGCACTTGCTAAGGAAATTGTGAGTTCGAGAAGAACAGTGAACC 307
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 ATATGGTCTCTGCTAAGGCACTTGCTAAGGAAATTGTGAGTTCTAGAAGAACAGTGAACC 240
Query 308 GGTTATATGAGAATAAGGCACAGATGAATTCTATATCAATGCATCTTGGAGAGAGTGTTG 367
|||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 241 GGTTATATGAAAATAAGGCGCAGATGAATTCGATATCAATGCACCTTGGGGAGAGTGTTG 300
Query 368 CGATTGCTCGAACAGTTGGGCATTTGTCGAAGAGCGCAGAGGTTATGAAGCTTGTTAATA 427
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 301 CGATTGCTCGAACAGTTGGGCATTTGTCGAAGAGTGCGGAGGTTATGAAGCTTGTTAATA 360
Query 428 ATCTCATGAAGGCTCCACAGATGGCTGCAACAATGCAAGAATTTAGCAAAGAGATGACTA 487
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ATCTCATGAAGGCTCCACAAATGGCTGCAACAATGCAGGAATTTAGCAAAGAGATGACTA 420
Query 488 AGGCCGGAGTTATTGAAGAGTTTGTGAATGAGGCCATTGACAATGCTCTAGATTCAGAGG 547
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGGCCGGAGTTATTGAGGAGTTTGTGAATGAGGCCATTGACAATGCTCTAGATTCAGAGG 480
Query 548 ATATGGAAGAAGAGATTGATGAAGAGGTTGATAAAGTATTGACAGCAATTGCTGGAGAAA 607
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATATGGAAGAAGAGATCGATGAAGAGGTTGATAAAGTATTGACAGCAATTGCTGGAGAAA 540
Query 608 CCGCTGCAGAGCTCCCAGTAGCTGTTAGGAAGGAGAGGATAAAGGTACCTGCACAGAAGG 667
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 541 CCGCTGCAGAGCTCCCAGAAGCTGTTAGAAAGGAAAGGATAAAGGTACCTGCACAGAAGG 600
Query 668 CGAGCACTTCACGTGAGGAAGAGGCAGTTGCAGAGGGTGTTGATGATGAGGAGGAATTGG 727
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 601 CGAGCACTTCTCGTGAGGAAGAGGCAATTGCAGAGGGTGTTGATGATGAGGAAGAATTGG 660
Query 728 AGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACTGTTTCTAGTGACTCTTTTAA 787
|||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 661 AGGAAATTCGAGCTCGGCTCGCTAAAGTTAGATCCTAACT-TTT--A---A-------A- 706
Query 788 ACGCTATTCTTGATTGATATGATCAACTTTTGATGAGAACACAAGGAGATCGCACTGTAT 847
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 707 -CGCTATTCTTGATTGATATGATCAACTTTTGATGAGAACAGAAGGCGATCGCAGTGTAT 765
Query 848 TGTATAATATAAATGAATA-ACCATGCTTCAAAGTTCAAAATACATGTAAACATTATTGT 906
||||||||||||||||| | |||||||||| | ||| |||||||||||||||||||
Sbjct 766 TGTATAATATAAATGAAAATACCATGCTTC---G---AAA-TACATGTAAACATTATTGT 818
Query 907 TAACGAAGTGttttt 921
||||||||| |||||
Sbjct 819 TAACGAAGT-TTTTT 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35187452391
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5