BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22970.1
Length=527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489151 jgi|Araly1|489151|fgenesh2_kg.6__2285__AT5G22970.1 623 4e-178
> Ahg489151 jgi|Araly1|489151|fgenesh2_kg.6__2285__AT5G22970.1
Length=477
Score = 623 bits (337), Expect = 4e-178
Identities = 436/483 (90%), Gaps = 10/483 (2%)
Strand=Plus/Plus
Query 4 GGTATCGATCATGGTCCTAATGCTCTTTGCTAGGTCTGGATCTGCACGTGCCGCCACACT 63
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GGTATCGATCATGGCCCTAATGCTCTTTGCTAGGTCTGGATCCGCACGTGCCGCCACACT 60
Query 64 TATCGTATCCAACGAGATGCAAACAC-TTCCAAATGTTCCCGTTTTCGTCACGTGCCGCC 122
| |||||||||||||||||||||||| || | ||| ||||||||||||||||||||||||
Sbjct 61 TCTCGTATCCAACGAGATGCAAACACATT-CTAATATTCCCGTTTTCGTCACGTGCCGCC 119
Query 123 CAACCCCTGAACTGTCCAAATCCGTACCTTTGGGTCAAAAGAT-TATGATAGAGATCCCA 181
|||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||||||
Sbjct 120 CAACCCCTGAGCTGTCCAAATCCGTACCTTTGGGTCAAAAGATGT-TGATAGACATCCCA 178
Query 182 AGCATTGCCGGCGATAATGAAAAAGTGGCGGGATCTAGACAGTTATCACATACGCTATGT 241
||||||||||| ||||||||||||| || |||||||| |||||| |||||||| ||||
Sbjct 179 AGCATTGCCGGAGATAATGAAAAAGCGGAGGGATCTACACAGTTGCCACATACGGAATGT 238
Query 242 GTAGGAACGTTTTACAATAAGAAAAGTTCCGCAGCTTACGGGATGTGGTTCGTTTTGTAC 301
|||||||||||| ||| |||||||| ||||| | ||||||||||||||||||||||||||
Sbjct 239 GTAGGAACGTTTGACACTAAGAAAAATTCCGGACCTTACGGGATGTGGTTCGTTTTGTAC 298
Query 302 GATTCATCAGACAAAGATCACTGCAAAGACTCGTGTTCCATTTTTGCCAAAGACTATGGA 361
|||||| || |||||| |||||||||||||||||||||| ||| |||||||||||||
Sbjct 299 GATTCA---GATAAAGATTACTGCAAAGACTCGTGTTCCATCGTTGTCAAAGACTATGGA 355
Query 362 TTTTATAGTTGGAACAATAACAAGAAAACCTTCGATCTCATCCCTCCAAGGTTTTGGATT 421
|||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 356 TTTTATCGTTGGAACAATAACAAGAAAACCTGGGATCTCATCCCTCCGAGGTTTTGG-TT 414
Query 422 -AACTAGTTAATCTTTTATTTCCGT-TTAACGTTATACTTCCAGATTCGAACTATATAAA 479
||||||| |||||| ||||||||| || |||||| |||| ||||||| |||||||||
Sbjct 415 GAACTAGTAAATCTTCTATTTCCGTGTTTTTGTTATATTTCCGGATTCGATCTATATAAA 474
Query 480 TTT 482
|||
Sbjct 475 TTT 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19192261267
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5