BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22980.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489152 jgi|Araly1|489152|fgenesh2_kg.6__2286__AT5G22980.1 2146 0.0
Ahg484895 jgi|Araly1|484895|fgenesh2_kg.5__887__AT3G45010.1 726 0.0
> Ahg489152 jgi|Araly1|489152|fgenesh2_kg.6__2286__AT5G22980.1
Length=1527
Score = 2146 bits (1162), Expect = 0.0
Identities = 1395/1508 (93%), Gaps = 14/1508 (1%)
Strand=Plus/Plus
Query 18 TTTTCTCTTCATGCTTTTCATCTTTTCTCAGTCTTGGCTCTCAACTTCTAAAAGGATCCT 77
||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 27 TTTTCTCCTCATGATTTTCATCTTTTCTCAGTTTTCGCTCTCAACTTCTAAAAGGATCCT 86
Query 78 AAACAATCCCTCTGTTTTCTCATCGTCTTTGAATTTTTCGAGTGGTAATGCAGAGAGACT 137
|||||||||||||||||||||| ||||| || || ||||| |||||||||||| |||
Sbjct 87 AAACAATCCCTCTGTTTTCTCACCGTCTCCGAGTTCGTCGAGCAGTAATGCAGAGAAACT 146
Query 138 TATAAAATCATTCAATCTAATGCCTAAGTATGACGTTAATGTCATCCCAAAAGGAAGCCT 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 TATAAAATCATTCAATCTAATGCCTAAGTATGACGTTAATGTCATCCCAAAAGGAAGCCC 206
Query 198 TGATGCTCCAAGACTCATTGAGAGACAAATTGATTTTCTGGCGACAG-CCGGTTCCAAAA 256
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||
Sbjct 207 CGATGCTCCAAGACTCATTGAGAGACAAATTGATTTTCCAGCGAC-GATCGGTTCCCAAA 265
Query 257 ACGCTTCCGTTGGTCCTTCTGTTCAAGAGTTTGGCCACTACGCTGGTTATTACAGCCTTC 316
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 ACGCTTCAAAAGGTCCATCTGTTCAAGAGTTTGGCCACTACGCTGGTTATTACAGCCTTC 325
Query 317 CTCATTCAAAATCAGCCAAGATGTTCTATTTCTTTTTTGAATCACGGAACAAAACA-ACC 375
|||| || |||||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 326 CTCACTCCAAATCAGCCAAGATGTTCTACTTCTTTTTTGAATCACGGAACAAAA-ATACC 384
Query 376 GATCCGGTTGTGATCTGGTTAACCGGTGGACCGGGCTGCAGTAGTAGTGTGGCTATGTTT 435
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 385 GATCCGGTTGTGATATGGTTAACCGGTGGACCGGGCTGCAGTAGCAGTGTCGCTATGTTC 444
Query 436 TATGAAAACGGTCCGTTCAAGATCTCAAAGGATTTGTCTCTCTA-TTGGAACGATTTTGG 494
|| || |||||||| |||||| ||||| ||||| |||||||| | |||||||||||||||
Sbjct 445 TACGAGAACGGTCCCTTCAAGCTCTCAGAGGATCTGTCTCTC-ACTTGGAACGATTTTGG 503
Query 495 CTGGGACAAGGTATCCAATATAATCTACGTGGATCAGCCAGTCGGGACTGGTTTCAGTTA 554
|||||||||||||||||| | |||||||||||||||||| | ||||| |||||||||||
Sbjct 504 ATGGGACAAGGTATCCAATCTGATCTACGTGGATCAGCCAATTGGGACCGGTTTCAGTTA 563
Query 555 CACATCTGACGAAAGCGATATCCGGAATGACGAGGATGGTGTCAGTAATGACCTTTATGA 614
|||||||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 564 CACATCTGCCGAAAGCGATCTCCGGCATGACGAGGCTGGTGTCAGTAATGACCTTTATGA 623
Query 615 TTTCTTACAGGCTTTCTTTAAAGAGCATCCAAAATTCGTAAAGAATGATTTCTTTATTAC 674
||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 624 TTTTTTACAGGCTTTTTTTAAAGAGCATCCAAAATTCGTAAAGAACGATTTCTTTATTAC 683
Query 675 CGGTGAATCTTACGCTGGTCACTACATTCCGGCTTTGGCTTCACGTGTTCATAGTGGCAA 734
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 684 CGGTGAATCTTACGCTGGTCACTACATTCCGGCTTTGGCTTCACGTGTTCACAGTGGAAA 743
Query 735 CAAAAAGAAAGAAGGGATTCCAATCAACCTTAAGGGTTTTGCGATTGGTAACGGTTTAAC 794
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CAAAAAGAAAGAAGGAATTCCAATCAACCTTAAGGGTTTTGCGATTGGTAACGGTTTAAC 803
Query 795 CAACCCGGAGATCCAATATGGTGCGTATGGGGATTATGCACTGCAAATGAAGTTGATTTC 854
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 804 CAACCCCGAGATCCAATATGGTGCTTATGGGGATTATGCACTGCAAATGAAGTTGATTTC 863
Query 855 AGAGTCTGACCACGAGAGCCTCAAGCAAGATTACGTTGAGTGTCAAAATATAACCAAAAA 914
||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 864 AGAGTCTGATCACGAGAGCATCAAGCAAGATTACGTTGAGTGTCAAAATTTAACCAAAAA 923
Query 915 ATGCAGTCTTGGTGGTGGTTTAGTTTGTGATTCTGCTGTTGAAGTTTGCACCAGTATCTT 974
||||| ||||| ||||||||||| ||||||||||||| |||| ||||||| || ||||||
Sbjct 924 ATGCAATCTTGATGGTGGTTTAGCTTGTGATTCTGCTTTTGATGTTTGCAACAATATCTT 983
Query 975 CAACAAGATAGTGGCaaaaaaaaGTGGCCTAAATTATTATGACATTAGGAAGAAATGTGT 1034
||||| ||||| ||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 984 CAACATGATAGCGGCAAAAAAGAGAGGCATAAATTATTATGACATTAGGAAGAAATGTGT 1043
Query 1035 GGGGAGCTTGTGTTATGACTTTTCGAGGATGG-AAATATTCTTGAACAAAGAAAATGTAC 1093
||| |||||||||||||||||||||| ||||| |||| ||||||||||||||||| ||||
Sbjct 1044 GGGAAGCTTGTGTTATGACTTTTCGAAGATGGAAAAT-TTCTTGAACAAAGAAAACGTAC 1102
Query 1094 GGAAAGCCTTAGGAGTTGGAGATATC-AAGTTTGTGTCTTGTAGTAGTACAGTTTATGAT 1152
|||||||||||||||||||||||||| || ||||||||||||||||| || |||||||||
Sbjct 1103 GGAAAGCCTTAGGAGTTGGAGATATCGAA-TTTGTGTCTTGTAGTAGCACCGTTTATGAT 1161
Query 1153 GCAATGATAGAGGACTGGATGCA-GAATCTTGAGGTCAAGATCCCGTCTCTTGTCAATGA 1211
||||||| |||||| |||||| | ||||||||||||||||| ||| |||||||||| ||
Sbjct 1162 GCAATGACAGAGGATTGGATG-ATTAATCTTGAGGTCAAGATTCCGACTCTTGTCAACGA 1220
Query 1212 TGGAATCAATCTTCTAGTTTATGCTGGAGAATATGATCTCATTTGCAATTGGCTTGGAAA 1271
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1221 TGGAATCAATCTTCTAATTTATGCGGGAGAATATGATCTCATTTGCAATTGGCTTGGAAA 1280
Query 1272 CTCGAGGTGGGTAGACCAAATGAATTGGTCAGGCCAAAAGGGTTTTGGATCAGCAAAAAA 1331
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1281 CTCGAGGTGGGTAGACCAAATGAATTGGTCAGGCCAAAAGGGTTTTGGATCAGCGAAAAA 1340
Query 1332 CGTATCATTCTTAGTAGATGGTAAAGAAGCCGGTTTACTGAAAAATCACGGTCCTCTCAC 1391
|||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1341 CGTACCATTCTTAGTAGATGGTAAAGAAGCCGGTTTACTGAAAAATTATGGTCCTCTCAC 1400
Query 1392 TTTTCTTAAGGTTTATAACGCTGGACACATGGTTCCGATGGATCAACCAAAGGCTTCT-T 1450
||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1401 TTTTCTTAAGGTTCATGACGCTGGACACATGGTTCCGATGGATCAACCTAAGGCTTCTCT 1460
Query 1451 TGCAAATGCTTCAGAATTGGATGCAAGGAAAGCTTAGGACTACTCCTGTACTAGGATTTA 1510
| ||||||||||||||||||||||||||||||||||| ||| | ||| | ||||||
Sbjct 1461 T-CAAATGCTTCAGAATTGGATGCAAGGAAAGCTTAGCACTCCGAATGTTCGGGGATTTG 1519
Query 1511 GTCAATGA 1518
||||||||
Sbjct 1520 GTCAATGA 1527
> Ahg484895 jgi|Araly1|484895|fgenesh2_kg.5__887__AT3G45010.1
Length=1676
Score = 726 bits (393), Expect = 0.0
Identities = 979/1254 (78%), Gaps = 72/1254 (6%)
Strand=Plus/Plus
Query 270 TCCTTCTGTTCAAGAGTTTGGCCACTACGCTGGTTATTACAGCCTTCCTCATTCAAAATC 329
||| || |||||||| ||||| ||| | |||||||| |||| || ||| |||||||| |
Sbjct 285 TCCGTCGGTTCAAGATTTTGGTCACCATGCTGGTTACTACAAACTCCCTAATTCAAAAGC 344
Query 330 AGCCAAGATGTTCTA-TTTCTTTTTTGAATCACGGAACAAAAC-AA-CCGATCCGGTTGT 386
||||| ||||||||| ||| || || || ||| || || ||| || ||||||| || ||
Sbjct 345 AGCCAGGATGTTCTACTTT-TTCTTCGAGTCAAGG-AC-TAACAAAGCCGATCCAGTGGT 401
Query 387 GATCTGGTTAACCGGTGGACCGGGCTGCAGTAGTAG-TGTGGCTATGTTTTATGAAAACG 445
|| ||| |||| |||||||| || ||||||||| | ||||| |||| || || ||||
Sbjct 402 CATTTGGCTAACTGGTGGACCTGGTTGCAGTAGT-GAACTGGCTCTGTTCTACGAGAACG 460
Query 446 GTCCGTTCA-AGATCTCAAAGGATTTGTCTCTCTATTGGAACGATTTTGGCTGGGACAAG 504
| ||||||| | |||| || | | ||||| | ||||||||| ||||| |||||||||
Sbjct 461 GACCGTTCACCG-TCTCCAACAACTCATCTCTTTCTTGGAACGAATTTGGTTGGGACAAG 519
Query 505 GTATCCAATATAATCTACGTGGATCAGCCAGTCGGGACTGGTTTCAGTTACACATCTGAC 564
| ||| ||| ||||||||||||| || || || || || |||||||||||||||||||||
Sbjct 520 GCATCGAATCTAATCTACGTGGACCAACCGGTTGGAACCGGTTTCAGTTACACATCTGAC 579
Query 565 GAAAGCGATATCCGGA-ATGACGAGGATGGTGTCAGTAATGACCTTTATGATTTCTTACA 623
|||||||| | | || | ||||||||||||||||||||||||||||| || ||||||||
Sbjct 580 CAAAGCGATCTTC-GACACGACGAGGATGGTGTCAGTAATGACCTTTACGACTTCTTACA 638
Query 624 GGCTTTCTTT-AAAGAGCATCCAAAATTCGTAAAGAATGATTTCTTT-ATTACCGGTGAA 681
|||||| ||| |||||||||||| |||| || |||||||| || || || |||||||||
Sbjct 639 GGCTTT-TTTCAAAGAGCATCCACAATTTGTGAAGAATGACTT-TTACATCACCGGTGAA 696
Query 682 TCTTACGCTGGTCACTACATTCCGGCTTTGGCTTCACGTGTTCATAGTGGCAACAAAAAG 741
|| || || || || ||||||||||| ||||||||||| ||||| |||| ||||| ||
Sbjct 697 TCCTATGCCGGACATTACATTCCGGCATTGGCTTCACGGGTTCACCGTGGTAACAAGAAC 756
Query 742 AAAGAAGGGATTC-CAATCAACCTTAAGGGTTTTGCGATTGGTAACGGTTTAACCAACCC 800
|||||||| | || || | ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 757 AAAGAAGGAACTCACATT-AACCTTAAGGGTTTTGCAATCGGTAACGGTTTGACCAACCC 815
Query 801 GGAGATCCAATATGGTGCGTATGGGGATTATGCACT-GCAAATGAAGTTGATTTCAGAGT 859
|||||| ||||||||||| |||| ||||||||| || | | ||||||||||| || |||
Sbjct 816 GGAGATTCAATATGGTGCTTATGCGGATTATGCGCTAG-ACATGAAGTTGATAACACAGT 874
Query 860 CTGACCACGAGAGCCTCAAGCA-AGATTACGTTGAGT-GTCAA-AATATAACCAAAAAAT 916
|||| ||||| | ||| || | | | |||| | | ||||| ||| | | ||| |||
Sbjct 875 CTGATCACGATAACCTTAACCGTA-ACTACGCA-ACTTGTCAACAATCCATC-AAAGAAT 931
Query 917 GCAGT-CT--TGGTGGTG--GTTTA-GTTTGTGATTCTGCTGTT-GAAGTTTGCACCAGT 969
|||| | |||||| | | | | | ||||| |||| || | | || |||| ||
Sbjct 932 GCAGCGCGGATGGTGGGGAAGGTGATGCTTGTGCTTCTTCT-TACGTTGTCTGCAACAAC 990
Query 970 ATCTTC-AACAAGAT-AGTGGCaaaaaaaaGTGGC-C-TAAATTATTATGACATTAGGAA 1025
|| ||| || ||||| | ||| | | || | | |||| ||||| ||| | |||||
Sbjct 991 ATTTTCCAA-AAGATTA-TGG-ATATTGCAG-GAAACGTAAACTATTACGACGTGAGGAA 1046
Query 1026 GA-AATGTGTGGGGAGCTTGTGTTATGACTTT-TCGAGGATGGA-AATATTCTTGAACAA 1082
| |||||| || |||||||| ||||| ||| |||| ||||| || ||||||||| |
Sbjct 1047 -ACAATGTGAAGGAAGCTTGTGCTATGA-TTTCTCGAACATGGAGAAG-TTCTTGAACCA 1103
Query 1083 AGAAAAT-G-TACGGAAAGCCTTAGGAGTTGGAGATATCAAGTTTGTGTCTTGTAGTAGT 1140
|||| | | ||||||| || ||||| || ||||||||| ||||||||||||||||||
Sbjct 1104 -GAAA-TCGGTACGGAAGGCATTAGGTGTGGGAGATATCGAGTTTGTGTCTTGTAGTAC- 1160
Query 1141 A-CAGTTTATGATGCAATGATAGA-GGACTGGATGCAGAATCTTGAGGTCAAGATCCC-G 1197
| | ||||| || |||||| ||| ||||||||||| ||||||||||||| ||| || |
Sbjct 1161 AGCGGTTTACGACGCAATGC-AGATGGACTGGATGCGGAATCTTGAGGTCGGGATTCCAG 1219
Query 1198 TCTCTTGT-CAATGATGGAATCAATCTTCTAGTTTATGCTGGAGAATATGATCTCATTTG 1256
||||| | ||| |||||||| || || || ||||| || || ||||| |||||||| ||
Sbjct 1220 -CTCTTCTTCAA-GATGGAATTAAGCTCCTTGTTTACGCCGGGGAATACGATCTCATCTG 1277
Query 1257 CAATTGGCTTGGAAACTCGAGGTGGGTAGACCAAATG-AATTGGTCAGGCCA-AAAGGGT 1314
||||||||| ||||| |||| |||||| || | ||| ||| |||||||||| ||| ||
Sbjct 1278 CAATTGGCTCGGAAATTCGAAGTGGGTTCACGAGATGGAAT-GGTCAGGCCAGAAACAGT 1336
Query 1315 TTTGGATCAGCAAAAA-ACGTATCA-TTCTTAGTAGATGGTAAAGAAGCCGGTTT-ACTG 1371
|| | | |||| | | || || ||| | ||||| |||||||||||||| | ||
Sbjct 1337 TT-GTAGCAGCCGCGACA-GT-TCCCTTCCTCGTAGACAACAAAGAAGCCGGTTTGA-TG 1392
Query 1372 AAAAA-TCACGGTCCTCTCACTTTTCTTAAGGTTTATAACGCTGGACACATGGTTCCGAT 1430
|| || | ||||| | || ||||| || ||||| || | ||||||||||||||||| ||
Sbjct 1393 AAGAACT-ACGGTTCACTTACTTTCCTCAAGGTCCATGATGCTGGACACATGGTTCCAAT 1451
Query 1431 GGATCAACCAAAGGCTTCTTTGCAAATGCTTCAGAATTGGATGCAAGGAAAGCT 1484
|||||| |||||||| | |||||||||||||| || |||||||||||||||||
Sbjct 1452 GGATCAGCCAAAGGCAGCATTGCAAATGCTTCAAAACTGGATGCAAGGAAAGCT 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5