BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G22990.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941816 jgi|Araly1|941816|scaffold_602360.1 1153 0.0
Ahg931746 jgi|Araly1|931746|scaffold_304203.1 132 6e-30
> Ahg941816 jgi|Araly1|941816|scaffold_602360.1
Length=1063
Score = 1153 bits (624), Expect = 0.0
Identities = 867/980 (88%), Gaps = 34/980 (3%)
Strand=Plus/Plus
Query 1 ATGACTTCAATCCCAAATGGCTTAAATTCTTATGTTGACGATACTGTGAACATTTGTGGT 60
||||||||||| ||||| || || | ||||||| ||| |||||| |||| ||| |||||
Sbjct 21 ATGACTTCAATTCCAAACGGTTTGTACTCTTATGGTGATGATACTATGAATATTCGTGGT 80
Query 61 TTTACTCCCATCGAAATGAGTTCCAACCTTAGGAATCATGAGTCTAAGATGGTTCACTCA 120
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 81 TTTACTCCCATCGAAATGAGTTCCAACCTTAGGAATCACGAGTCTAAGATAGTTCAGTCA 140
Query 121 ATGTTCAATACTTCTGACCACACGAATCATCATGGTTTGTTTTCTTCCTCTCGTGTGTTT 180
||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||
Sbjct 141 ATGTTCAATACTTCTGACCACTCGAACCATCATGGTTTGTTTTCTTCCTCTCGTGCGTTT 200
Query 181 AATTTTTATCAAGATTCACATGTTTCTTCATCTTCTTTTGGTTTCAACAATTCACATATG 240
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 201 AATTGTTATCAAGATTCACATGTTTCTTCATCTTCTTTTGATTTCAGCAATTCACATATG 260
Query 241 GCTTATCATATGAGAAAAAACATGGTTTCCACTTTTGGGATGCCTTGCATAACTCAAAA- 299
|||||||||||||||||||||||||||| |||||||||||||||| || |||| ||||
Sbjct 261 TCTTATCATATGAGAAAAAACATGGTTTCTACTTTTGGGATGCCTTCCACAACT-AAAAT 319
Query 300 CTCAAATAACCCTCATCTTTCTCAAATCTCTATTACTCAAACTATCACAAATAGCTATTC 359
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||
Sbjct 320 CTCAAATAACCCTCATCTTTCTCAGATCTCTATCACTCAAACTATCAAAAATAGCTATTC 379
Query 360 TGCTATTGTTCCTACCTATAATCTTATTACTTCCCAAAATGAATATCAACGTGCCAAAGA 419
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 380 TGCTATTGTTCCTACCAATAATCTTATTACTTCCCAAAATGAATATCAACGTGCCAT-GA 438
Query 420 A-CCCAACATCTTCAATCCTCCTTTTTACCCTCCAAATTTTGTTGACAAAA-ATGTTGGA 477
| ||||||||||||||| |||| |||||||||||||||||||||| |||| | ||
Sbjct 439 ATCCCAACATCTTCAATTCTCCACTTTACCCTCCAAATTTTGTTGA-AAAAGA-GT---- 492
Query 478 AACCAATGCCAGATCTTGAATCCTACACCCCTCAATACCATTTTTCCACATCAAGCTTCC 537
|| | ||||||||||||||||||| ||||||||||||||||| |||||| ||||
Sbjct 493 --CC---G--AGATCTTGAATCCTACACCTCTCAATACCATTTTTCCGCATCAAACTTCT 545
Query 538 ATATTTCCTAGGAATGTAGACAAATTTTCTTTTTCACCAAAACAGAACCCTCACCAATAT 597
|||||| ||||||| |||||| ||||| |||||||||||||| | ||||||||||||
Sbjct 546 GTATTTCGTAGGAATTTAGACATGTTTTCCTTTTCACCAAAACACCATCCTCACCAATAT 605
Query 598 GTTTCGTATCGCCAACCCCTGAA-AAGACATTGTAGA-CCAACCAAAAAATTTGAA-AAT 654
||||| |||| ||||| |||| || ||||||| || ||| ||||| | |||||| ||
Sbjct 606 GTTTCCTATCATCAACCAGTGAAGAA-ACATTGTGGAGCCA-CCAAACATTTTGAAGAA- 662
Query 655 ACTTTT-AGTGATTTTGATTCTGGA-AAAGATATTGAATACGATGGTCGGACGCATAGCT 712
|||||| | ||||||||||||| | ||| ||| |||||||||||||||||| |||||||
Sbjct 663 ACTTTTGA-TGATTTTGATTCTAAAGAAA-ATAGTGAATACGATGGTCGGACACATAGCT 720
Query 713 TACCATATGAGAAATACGGTCCATATACATGTCCCAAATGTAACAGTGTGTTTGACACTT 772
|||||||| | ||||| ||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 721 TACCATATAAAAAATATGGTCCATATACATGTCCTAAATGTAACCGTGTGTTTGATACTT 780
Query 773 CACAAAAGTTTGCTGCACATATATCATCGATGCACTACAAAAATGAGTCCATAGAAGAGA 832
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 781 CACAAAAGTTTGCTGCACATATTTCATCGATGCACTACAAAAATGAGACCATCGAAGAGA 840
Query 833 AATTTAAGAGATATAATGCAAGGAACAAAAAGAGATTACGTAAAAG-AA--A---CCAAA 886
|||||||||||||||||||||||||||||||||||| |||||||| || | |||||
Sbjct 841 AATTTAAGAGATATAATGCAAGGAACAAAAAGAGATCACGTAAAACTAACCATAACCAAA 900
Query 887 TGATCCATGAAGAATCTAACAATATCCAACCAGAAGAGATAGTTGCAGAGGAAAGCGGAG 946
|||||||||| || ||| ||| ||||||||||| |||| ||||||| |||||| ||||
Sbjct 901 TGATCCATGAGGACTCTCGCAACATCCAACCAGAGGAGAGAGTTGCAAAGGAAAATGGAG 960
Query 947 GCGATAACAACATAGCAAGT 966
|| |||||||||||||||||
Sbjct 961 GCAATAACAACATAGCAAGT 980
> Ahg931746 jgi|Araly1|931746|scaffold_304203.1
Length=1044
Score = 132 bits (71), Expect = 6e-30
Identities = 109/126 (87%), Gaps = 7/126 (6%)
Strand=Plus/Plus
Query 689 AATACGATGGTCGGACGCATAGCT-TACCATATGAGAAATACGGTCCATATACATGTCCC 747
|||| ||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 715 AATATGATGGTCGGACACATAG-TCTACCGTATGAGAAATACGGTCCATATACATGTCCC 773
Query 748 AAATGTAACAGTGTGTTTGACACTTCACAA-AAGTTTGCTGCACATATATCATCGATGCA 806
||||| ||| |||| ||| | ||||| ||| || |||||||||||||| ||||| | ||
Sbjct 774 AAATGCAACGGTGTATTTAATACTTCTCAACAA-TTTGCTGCACATATGTCATC--T-CA 829
Query 807 CTACAA 812
||||||
Sbjct 830 CTACAA 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5