BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G22990.1 Length=975 Score E Sequences producing significant alignments: (Bits) Value Ahg941816 jgi|Araly1|941816|scaffold_602360.1 1153 0.0 Ahg931746 jgi|Araly1|931746|scaffold_304203.1 132 6e-30 > Ahg941816 jgi|Araly1|941816|scaffold_602360.1 Length=1063 Score = 1153 bits (624), Expect = 0.0 Identities = 867/980 (88%), Gaps = 34/980 (3%) Strand=Plus/Plus Query 1 ATGACTTCAATCCCAAATGGCTTAAATTCTTATGTTGACGATACTGTGAACATTTGTGGT 60 ||||||||||| ||||| || || | ||||||| ||| |||||| |||| ||| ||||| Sbjct 21 ATGACTTCAATTCCAAACGGTTTGTACTCTTATGGTGATGATACTATGAATATTCGTGGT 80 Query 61 TTTACTCCCATCGAAATGAGTTCCAACCTTAGGAATCATGAGTCTAAGATGGTTCACTCA 120 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 81 TTTACTCCCATCGAAATGAGTTCCAACCTTAGGAATCACGAGTCTAAGATAGTTCAGTCA 140 Query 121 ATGTTCAATACTTCTGACCACACGAATCATCATGGTTTGTTTTCTTCCTCTCGTGTGTTT 180 ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 141 ATGTTCAATACTTCTGACCACTCGAACCATCATGGTTTGTTTTCTTCCTCTCGTGCGTTT 200 Query 181 AATTTTTATCAAGATTCACATGTTTCTTCATCTTCTTTTGGTTTCAACAATTCACATATG 240 |||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 201 AATTGTTATCAAGATTCACATGTTTCTTCATCTTCTTTTGATTTCAGCAATTCACATATG 260 Query 241 GCTTATCATATGAGAAAAAACATGGTTTCCACTTTTGGGATGCCTTGCATAACTCAAAA- 299 |||||||||||||||||||||||||||| |||||||||||||||| || |||| |||| Sbjct 261 TCTTATCATATGAGAAAAAACATGGTTTCTACTTTTGGGATGCCTTCCACAACT-AAAAT 319 Query 300 CTCAAATAACCCTCATCTTTCTCAAATCTCTATTACTCAAACTATCACAAATAGCTATTC 359 |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| Sbjct 320 CTCAAATAACCCTCATCTTTCTCAGATCTCTATCACTCAAACTATCAAAAATAGCTATTC 379 Query 360 TGCTATTGTTCCTACCTATAATCTTATTACTTCCCAAAATGAATATCAACGTGCCAAAGA 419 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 380 TGCTATTGTTCCTACCAATAATCTTATTACTTCCCAAAATGAATATCAACGTGCCAT-GA 438 Query 420 A-CCCAACATCTTCAATCCTCCTTTTTACCCTCCAAATTTTGTTGACAAAA-ATGTTGGA 477 | ||||||||||||||| |||| |||||||||||||||||||||| |||| | || Sbjct 439 ATCCCAACATCTTCAATTCTCCACTTTACCCTCCAAATTTTGTTGA-AAAAGA-GT---- 492 Query 478 AACCAATGCCAGATCTTGAATCCTACACCCCTCAATACCATTTTTCCACATCAAGCTTCC 537 || | ||||||||||||||||||| ||||||||||||||||| |||||| |||| Sbjct 493 --CC---G--AGATCTTGAATCCTACACCTCTCAATACCATTTTTCCGCATCAAACTTCT 545 Query 538 ATATTTCCTAGGAATGTAGACAAATTTTCTTTTTCACCAAAACAGAACCCTCACCAATAT 597 |||||| ||||||| |||||| ||||| |||||||||||||| | |||||||||||| Sbjct 546 GTATTTCGTAGGAATTTAGACATGTTTTCCTTTTCACCAAAACACCATCCTCACCAATAT 605 Query 598 GTTTCGTATCGCCAACCCCTGAA-AAGACATTGTAGA-CCAACCAAAAAATTTGAA-AAT 654 ||||| |||| ||||| |||| || ||||||| || ||| ||||| | |||||| || Sbjct 606 GTTTCCTATCATCAACCAGTGAAGAA-ACATTGTGGAGCCA-CCAAACATTTTGAAGAA- 662 Query 655 ACTTTT-AGTGATTTTGATTCTGGA-AAAGATATTGAATACGATGGTCGGACGCATAGCT 712 |||||| | ||||||||||||| | ||| ||| |||||||||||||||||| ||||||| Sbjct 663 ACTTTTGA-TGATTTTGATTCTAAAGAAA-ATAGTGAATACGATGGTCGGACACATAGCT 720 Query 713 TACCATATGAGAAATACGGTCCATATACATGTCCCAAATGTAACAGTGTGTTTGACACTT 772 |||||||| | ||||| ||||||||||||||||| ||||||||| |||||||||| |||| Sbjct 721 TACCATATAAAAAATATGGTCCATATACATGTCCTAAATGTAACCGTGTGTTTGATACTT 780 Query 773 CACAAAAGTTTGCTGCACATATATCATCGATGCACTACAAAAATGAGTCCATAGAAGAGA 832 |||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| Sbjct 781 CACAAAAGTTTGCTGCACATATTTCATCGATGCACTACAAAAATGAGACCATCGAAGAGA 840 Query 833 AATTTAAGAGATATAATGCAAGGAACAAAAAGAGATTACGTAAAAG-AA--A---CCAAA 886 |||||||||||||||||||||||||||||||||||| |||||||| || | ||||| Sbjct 841 AATTTAAGAGATATAATGCAAGGAACAAAAAGAGATCACGTAAAACTAACCATAACCAAA 900 Query 887 TGATCCATGAAGAATCTAACAATATCCAACCAGAAGAGATAGTTGCAGAGGAAAGCGGAG 946 |||||||||| || ||| ||| ||||||||||| |||| ||||||| |||||| |||| Sbjct 901 TGATCCATGAGGACTCTCGCAACATCCAACCAGAGGAGAGAGTTGCAAAGGAAAATGGAG 960 Query 947 GCGATAACAACATAGCAAGT 966 || ||||||||||||||||| Sbjct 961 GCAATAACAACATAGCAAGT 980 > Ahg931746 jgi|Araly1|931746|scaffold_304203.1 Length=1044 Score = 132 bits (71), Expect = 6e-30 Identities = 109/126 (87%), Gaps = 7/126 (6%) Strand=Plus/Plus Query 689 AATACGATGGTCGGACGCATAGCT-TACCATATGAGAAATACGGTCCATATACATGTCCC 747 |||| ||||||||||| ||||| | |||| |||||||||||||||||||||||||||||| Sbjct 715 AATATGATGGTCGGACACATAG-TCTACCGTATGAGAAATACGGTCCATATACATGTCCC 773 Query 748 AAATGTAACAGTGTGTTTGACACTTCACAA-AAGTTTGCTGCACATATATCATCGATGCA 806 ||||| ||| |||| ||| | ||||| ||| || |||||||||||||| ||||| | || Sbjct 774 AAATGCAACGGTGTATTTAATACTTCTCAACAA-TTTGCTGCACATATGTCATC--T-CA 829 Query 807 CTACAA 812 |||||| Sbjct 830 CTACAA 835 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36216771150 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5