BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23000.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894175 jgi|Araly1|894175|Al_scaffold_0006_2171 1476 0.0
> Ahg894175 jgi|Araly1|894175|Al_scaffold_0006_2171
Length=993
Score = 1476 bits (799), Expect = 0.0
Identities = 938/1002 (94%), Gaps = 21/1002 (2%)
Strand=Plus/Plus
Query 100 ATGGGAAGAGCTCCGTGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAA 159
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGCTCCATGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAG 60
Query 160 GAAGACTCTAAACTTAGAGATTACATTGAAAAGTATGGTAATGGTGGAAATTGGATCTCT 219
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACTCTAAACTTAGAGATTACATCGAAAAGTATGGTAATGGTGGAAATTGGATCTCT 120
Query 220 TTCCCCCTCAAAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGACTGAGGTGGCTAAAC 279
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 CTCCCCCTTAAAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGATTGAGGTGGCTAAAC 180
Query 280 TATTTGAGACCAAACATAAAGCATGGTGACTTCTCTGAGGAAGAAGACAGGATCATTTTT 339
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATTTGAGACCAAACATAAAACATGGTGACTTCTCTGAGGAAGAAGACAGGATCATTTTT 240
Query 340 AGTCTCTTCGCTGCCATAGGAAGCAGGTGGTCAATAATAGCAGCTCATCTACCGGGACGA 399
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGCCTCTTCGCTGCCATTGGAAGCAGGTGGTCAATAATAGCAGCTCATCTACCGGGAAGA 300
Query 400 ACAGACAACGACATAAAAAACTATTGGAACACAAAGCTAAGGAAGAAACTCTTGTCTTCT 459
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAGACAACGACATCAAAAACTATTGGAACACAAAGCTAAGGAAGAAACTCTTGTCTTCT 360
Query 460 TC--C-TC-TGAT-TCA-TCATCATCAGCCATGGCTTCTCCTTATCTAAACCCTATTTCT 513
|| | || | | | | ||| ||||||||||||||||| | |||||||||||| ||||
Sbjct 361 TCATCTTCTTCCTCTTATTCACCATCAGCCATGGCTTCT-C--ATCTAAACCCTAATTCT 417
Query 514 CAGGATGTGAAAAGACC---AACCTCACCAACAACAATCCCATCTTCTTCTTACAATCCG 570
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 418 CAGGATGTGAAAAGACCATTAACCCCATCAACAACAATCCCATCTTCTTCTTACAATCCG 477
Query 571 TATGCTGAAAACCCTAATCAATACCCAACAAAATCCCTCATCTCCAGCATCAATGGCTTC 630
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 478 TATGCTGAAAACCCTAATCACTACCCAACAAAATCACTCATCTCCAGCATCAATGGCTTT 537
Query 631 GAAGCTGGTGACAAACAGATAATTT-CCTATATTAACCCTAATTATCCTCAAGATCTCTA 689
||||||| ||| |||||||| ||| ||||||||| |||||||||||||||||||| ||
Sbjct 538 GAAGCTGATGAAAAACAGAT-TTTTCCCTATATTAGCCCTAATTATCCTCAAGATCCCTC 596
Query 690 TCTCTCGGACAGCAACAACAACACCT-CGAACGCAAATGGTTTCTTGCTCAACCACAATA 748
|||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 597 TCTCTCGGACAGCAGCAACAACACCTGGGAA-GCAAGTGGTTTCTTGCTCAACCACAATA 655
Query 749 TGTGTGATCAGTACAAGAACCACACCAGTTTTTCTTCAGACGTCAATGGgata-agatca 807
|||||||||| ||||| ||||||||||||||||| ||| |||||||||||| | ||||||
Sbjct 656 TGTGTGATCACTACAACAACCACACCAGTTTTTCCTCAAACGTCAATGGGA-AGAGATCA 714
Query 808 gagattatgatgaagcaagaagagataatgatgatgatgatgatagaCCACCACATTGAC 867
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 715 GAGATTATGATGAAGCAAGAAGAAACAATGATGATGATGATGATAGACCACCACATTGAC 774
Query 868 CAGAGGACAAAAGGGTACAATGGGGAATTCACACAAGGGTATTATAATTACTACAATGGG 927
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 775 CAGAGGACAAAAGGGTACAATGGGGATTTCACACAAGGGTATTATAACTACTACACTGGG 834
Query 928 CATGGGGATTTGAAGCAAATGATTAGTGGAACAGGCACTAATTCTAACATAAACATGGGT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CATGGGGATTTGAAGCAAATGATTAGTGGAACAGGCACTAATTCTAACATAAACATGGGT 894
Query 988 GGTTCAGGTTCATCTTCTAGTTCGATAAGCAACCTAGCTGAGAACAAAAGCAGTGGTAGC 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 895 TGTTCAGGTTCATCTTCTAGTTCGATAAGCAACCTAGCTGAGAACAAAAGCAGTAGTAGC 954
Query 1048 CTCCTACTAGAATACAAATGCTTGCCCTATTTCTACTCCTAG 1089
||||||| | | |||| ||||||||||||||||||||||||
Sbjct 955 CTCCTAC-A-AC-ACAAGTGCTTGCCCTATTTCTACTCCTAG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5