BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23010.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941819 jgi|Araly1|941819|scaffold_602363.1 2241 0.0
Ahg941820 jgi|Araly1|941820|scaffold_602364.1 1559 0.0
Ahg326599 jgi|Araly1|326599|fgenesh1_pm.C_scaffold_6001819 1548 0.0
> Ahg941819 jgi|Araly1|941819|scaffold_602363.1
Length=1573
Score = 2241 bits (1213), Expect = 0.0
Identities = 1438/1548 (93%), Gaps = 9/1548 (1%)
Strand=Plus/Plus
Query 54 TCTTT-TTTCTCCTACGTACTCCATAGTGATGGCTTCATCGCTTCTGACATCTTCCGTTA 112
||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||
Sbjct 1 TCTTTCTTTCTCCTACATACTCCATAGTTATGGCTTCATCACTTCTGACATCTTCCGGTA 60
Query 113 TGATCCCTACCACCGGTTCCACCGTGGTTGGCCGGTCAGTGTTACCCTTTCAATCTTCCC 172
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGATCCATACCACCGGTTCCACCGTGGTTGGCCGGTCAGTGTTACCCTTTCAATCTTCCC 120
Query 173 TGCACTCTCTCCGCCTGACCCATTCGTACAAGAACCCCGCAT-TGTTCATCTCATGTTGC 231
|||||||||| || || |||||| | |||||||| || |||| | |||||||||||||||
Sbjct 121 TGCACTCTCTTCGTCTCACCCATCCATACAAGAAGCCGGCATAT-TTCATCTCATGTTGC 179
Query 232 TCTTCTGTGTCCAAAAATGCGGCAACTAGTTCTACTGATCTCAAACCCGTTGTGGAACGG 291
|||||||| |||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 180 TCTTCTGTATCCAAAAATGGGGCAACTAATGCTACTGATCTCAAACCCGTTGTGGAACGG 239
Query 292 TGGCCGGAGTACATACCGAACAAGCTTCCCGACGGA-AACTATGTGCGTGTATTCGACAC 350
||||||||||||||||| |||||||| |||||| | |||||||||||||||||||||||
Sbjct 240 TGGCCGGAGTACATACCAAACAAGCTCCCCGAC-AACAACTATGTGCGTGTATTCGACAC 298
Query 351 GACGCTCCGTGACGGTGAACAATCTCCTGGTGGATCCCTCACTCCGCCGCAGAAGCTAGA 410
||| |||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 299 GACACTCCGTGATGGTGAACAAGCTCCCGGTGGATCCCTTACTCCGCCGCAGAAGCTAGA 358
Query 411 GATTGCCCGACAGCTCGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTCCGGGATC 470
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATTGCCCGGCAGCTTGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTCCGGGATC 418
Query 471 ATCTGAAGAAGAGTTAGAAACCATTAAGACCATCGCCAAGACTGTGGGGAATGAGGTGGA 530
|||||||||||||||||||||| |||| || ||||| ||||| |||||||||||||||||
Sbjct 419 ATCTGAAGAAGAGTTAGAAACCGTTAAAACTATCGCTAAGACCGTGGGGAATGAGGTGGA 478
Query 531 TGAGGAAACAGGTTACGTCCCTGTGATATGCGCCATAGCTCGATGCAAACATAGAGACAT 590
||||||||||||||||||||| || ||||||||||| || ||| ||||||||||||||||
Sbjct 479 TGAGGAAACAGGTTACGTCCCCGTAATATGCGCCATCGCACGAAGCAAACATAGAGACAT 538
Query 591 TGAGGCGACTTGGGAGGCGCTGAAGTACGCGAAGAGGCCAAGGATACTCGTATTCACATC 650
||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 539 TGAGGCGGCTTGGGAGGCGGTAAAGTACGCGAAGAGGCCAAGGATACTCATATTCACATC 598
Query 651 TACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTCAAGAAGAAGTGATTGAGAT 710
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 599 TACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAGGTGATTGAGAT 658
Query 711 GGCCGTGAGTAGTATTAGGTTTGCTAAAAGCTTGGGCTTCAATGACATCCAGTTTGGGTG 770
||||||||||||||| ||| | |||||||||||||||||||| |||||||| ||||||||
Sbjct 659 GGCCGTGAGTAGTATCAGGCTCGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTG 718
Query 771 CGAAGATGGCGGCAGGTCGGACAAGGATTTCCTATGCAAGATTCTAGGAGAAGCCATAAA 830
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 719 CGAAGATGGCGGCAGGTCGGACAAGGAGTTCCTATGCAAGATTCTAGGAGAAGCAATAAA 778
Query 831 AGCCGGTGTTACGGTGGTGACCATCGGTGATACGGTAGGGATCAACATGCCACATGAATA 890
||| |||||||||||||||| | ||| || |||||||||||||||||||||||||||||
Sbjct 779 AGCGGGTGTTACGGTGGTGAACGTCGCAGACACGGTAGGGATCAACATGCCACATGAATA 838
Query 891 CGGGGAACTCGTGACTTATCTCAAAGCAAACACCCCTGGAATTGACGATGTTGTCGTC-G 949
|| |||||||| || ||||||||||||||||| ||||||||||| ||| | ||| || |
Sbjct 839 TGGAGAACTCGTAACCTATCTCAAAGCAAACACTCCTGGAATTGATGATATCGTCTTCAG 898
Query 950 CTGTTCATTGTCACAACGACCTTGGTCTTGCAACCGCCAACTCAATCGCCGGTATACGTG 1009
|||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 899 -TGTTCATTGTCACAACGATCTTGGTCTTGCTACTGCCAACTCAATCGCCGGTATACGTG 957
Query 1010 CGGGAGCAAGACAGGTCGAAGTAACTATCAACGGAATTGGTGAAAGAAGTGGCAATGCGT 1069
||||||||||||| || |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 958 CGGGAGCAAGACAAGTGGAAGTAACGATCAACGGAATTGGTGAGAGAAGTGGGAATGCGT 1017
Query 1070 CGCTTGAGGAGGTCGTGATGGCTTTGAAATGTCGAGGGGCATATGTGATCAATGGGGTTT 1129
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1018 CGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGCATATGTGATCAATGGTGTTT 1077
Query 1130 ACACAAAAATAGACACACGCCAAATCATGGCTACCAGCAAGATGGTTCAAGAGTACACGG 1189
|||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1078 ACACAAGAATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGTACACCG 1137
Query 1190 GCTTGTATGTTCAAGCACATAAGCCCATAGTTGGAGCGAACTGTTTTGTTCATGAGAGCG 1249
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1138 GCTTGTATGTTCAACCACATAAGCCCATAGTTGGAGCCAACTGTTTTGTTCATGAGAGCG 1197
Query 1250 GCATTCATCAGGATGGAATATTGAAAAATAGGAGTACTTATGAGATCTTATCACCAGAAG 1309
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1198 GCATTCACCAGGATGGAATATTGAAAAATCGGAGTACATATGAGATCTTATCACCAGAAG 1257
Query 1310 ATATTGGGATTGTAAAATCTCAAAATTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGTC 1369
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1258 ATATTGGGGTCGTAAAATCTCAAAACTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGTC 1317
Query 1370 ACGCTGTGAAAGATCGGCTGAAAGAGTTGGGATATGAACTCGATGATGAGAAATTGAACG 1429
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1318 ATGCTGTGAAAGATCGGCTGAACGAGTTGGGATATGAACTCGATGATGAGAAACTGAACG 1377
Query 1430 -CTGTCTTCTCACTATTCAGAGATTTAACCAAGAATAAAAAGAGAATCACGGATGCTGAT 1488
| |||||||||| ||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 1378 AC-GTCTTCTCACGGTTCAGAGATCTAACCAAGCATAAAAAGAGGATCACGGATGCTGAT 1436
Query 1489 TTGAAGGCATTAGTAACATCTAGCGATGAAATCTCTTTGGAGAAATTAAACGGCGCTAAC 1548
||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1437 ATGAAGGCGTTAGTAACATCTAGCGACGAAATCTCTTTAGAGAAATTAAACGGCGCTAAC 1496
Query 1549 GGTTTAAAGTCTAACGGCTATATACCAGTTCCTCAGGTTTCATCGAAT 1596
||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1497 GGTTTAAAGTCTAACGGCTATGTACCAGTTCCTCAGGTTTCATCAAAT 1544
> Ahg941820 jgi|Araly1|941820|scaffold_602364.1
Length=1551
Score = 1559 bits (844), Expect = 0.0
Identities = 1283/1494 (86%), Gaps = 33/1494 (2%)
Strand=Plus/Plus
Query 61 TCTCCTACGTACTCCATAGTGATGGCTTCATCGCTTCTGACATCTTCC-GTTATGAT-CC 118
|||||||||||||| ||||| |||| ||| | ||||| ||||||||| | |||||| |
Sbjct 1 TCTCCTACGTACTCTATAGTAATGGTTTCGTTTCTTCTCACATCTTCCAG-TATGATAAC 59
Query 119 CTACCACCGGTTCCACCGTGGTTGGCCGGTCAGTGTTACCCTTTCAATCTTCCC-TGCAC 177
| ||||| || || || ||||| |||||||| ||||||| || |||||||| | | |
Sbjct 60 C-ACCACATGTCCCTCCATGGTTCTCCGGTCAGGGTTACCCATTGGATCTTCCCTTTC-C 117
Query 178 TCTCTCCGCCTGACCCATTCGTACAAGAACCCCG-CATTGTTCATCTCATGTTGCTCTTC 236
||||| |||||||||| | | ||||| || || | ||||||| |||||||| ||||||
Sbjct 118 TCTCTTCGCCTGACCCGTCCATACAACAA-GGCGACTTTGTTCACCTCATGTTACTCTTC 176
Query 237 TGTGTCCAAAAATGCGGCAACTAGTTCTACTGATCTCAAACCCGTTGTGGAACGGTGGCC 296
|| ||||||||| | ||||| ||| | ||||||||||||| | ||||||||| ||||
Sbjct 177 TGAGTCCAAAAAGGTGGCAAGTAG---TGCTGATCTCAAACCTGCCGTGGAACGGAGGCC 233
Query 297 GGAGTACATACCGAACAAGCTTCC-CGACGGA-AACTATGTGCGTGTATTCGACACGACG 354
||||||||||||||||||||||| | || | |||||||| |||||||| |||||||||
Sbjct 234 AGAGTACATACCGAACAAGCTTCCTC-AC-AAGAACTATGTTCGTGTATTAGACACGACG 291
Query 355 CTCCGTGACGGTGAACAATCTCCTGGTGGATCCCTCACT-CCGCCGCAGAAGCTAGAGAT 413
|||||||| |||||||||||||| |||| | | || | | || |||||||||||||||||
Sbjct 292 CTCCGTGATGGTGAACAATCTCCCGGTGCAGCACTTA-TCCCACCGCAGAAGCTAGAGAT 350
Query 414 TGCCCGACAGCTCGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTCCGG-GATCAT 472
|||||||||||| |||||||||||||| |||||||||||||| |||||||||| | || |
Sbjct 351 TGCCCGACAGCTTGCTAAACTCCGAGTTGACATCATGGAAGTTGGTTTTCCGGTG-TCGT 409
Query 473 CTGAAGAAGAGTTAGAAACCATTAAGACCATCGCCAAGACTGTGGGGAATGAGGTGGATG 532
|||| |||||||| ||| ||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 410 CTGAGGAAGAGTTCGAAGCCATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATG 469
Query 533 AGGAAACAGGTTACGTCCCTGTGATATGCGCCATAGCTCGATGCAAACATAGAGACATTG 592
|||||||||||||||||||||||||||||| ||| || ||||||||| ||||||||||||
Sbjct 470 AGGAAACAGGTTACGTCCCTGTGATATGCGGCATTGCCCGATGCAAAAATAGAGACATTG 529
Query 593 AGGCGACTTGGGAGGCGCTGAAGTACGCGAAGAGGCCAAGGATACT-CGTATTCACATCT 651
||||| |||||||||| |||||||| ||||||||||| ||| || | | |||||||||||
Sbjct 530 AGGCGGCTTGGGAGGCACTGAAGTATGCGAAGAGGCCCAGGGTAATAC-TATTCACATCT 588
Query 652 ACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTCAAGAAGAAGTGATTGAGATG 711
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 589 ACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATG 648
Query 712 GCCGTGAGTAGTATTAGGTTTGCTAAAAGCTTGGGCTTCAATGACATCCAGTTTGGGTGC 771
||||||| ||| ||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct 649 GCCGTGAACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGC 708
Query 772 GAAGATGGCGGCAGGTCGGACAAGGATTTCCTATGCAAGATTCTAGGAGAAGCCATAAAA 831
||||||||||||||| |||| |||||||| ||||| ||||||||||||||| | || |||
Sbjct 709 GAAGATGGCGGCAGGACGGAGAAGGATTTTCTATGTAAGATTCTAGGAGAAACGATTAAA 768
Query 832 GCCGGTGTTACGGTGGTGACCATCG-GTGATACGGTAGGGATCAACATGCCAC-ATGAAT 889
|| |||| || |||| | | | | || ||||| |||||||||||||| | | ||||
Sbjct 769 GCGGGTGCAACCACGGTGGGCTTTGCG-GACACGGTCGGGATCAACATGCCGCCA-GAAT 826
Query 890 ACGGGGAACTCGTGACTTATCTCAAAGCAAACACCCCTGGAATTGACGATGTTGTCGTCG 949
||| ||||||||| | ||| |||||| |||||| |||||| ||| ||| |||||||||
Sbjct 827 TCGGAGAACTCGTGGCCTATGTCAAAGAAAACACTCCTGGAGCTGATGATATTGTCGTCG 886
Query 950 CTGTTCATTGTCACAACGACCTTGGTCTTGCAACCGCCAACTCAATCGCCGGTATACGTG 1009
| ||||||| ||||||||||||||| |||| ||||||||| |||| |||||||| |||
Sbjct 887 CCATTCATTGCCACAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTG 946
Query 1010 CGGGAGCAAGACAGGTCGAAGTAACTATCAACGGAATTGGTGAAAGAAGTGGCAATGCGT 1069
|||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 947 GGGGAGCAAGACAAGTAGAAGTAACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGC 1006
Query 1070 CGCTTGAGGAGGTCGTGATGGCTTTGAAATGTCGAGGGGCATATGTGATCAATGGGGTTT 1129
||||||| ||||||||||||||||||||||||||||| | |||| | || |||| ||||
Sbjct 1007 CGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATATCTTATGGATGGTGTTT 1066
Query 1130 ACACAAAAATAGACACACGCCAAATCATGGCTACCAGCAAGATGGTTCAAGAGTACACGG 1189
||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || |
Sbjct 1067 ACACAAAAATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCG 1126
Query 1190 GCTTGTATGTTCAAGCACATAAGCCCATAGTTGGAG-CGAACTGTTTTGTTCATGAGAGC 1248
|| ||||||||||| |||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1127 GCATGTATGTTCAACCACATAAGCCAATAGTTGGAGAC-AACTGTTTTGTTCATGAGAGC 1185
Query 1249 GGCATTCATCAGGATGGAATATTGAAAAATAGGAGTACTTATGAGATCTTATCACCAGAA 1308
|||||||| ||||||||||||||||||||| | ||||| |||||||| ||||||||||||
Sbjct 1186 GGCATTCACCAGGATGGAATATTGAAAAATCGAAGTACATATGAGATTTTATCACCAGAA 1245
Query 1309 GATATTGGGATTGTAAAATCTCAAAATTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGT 1368
||| ||||||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 1246 GATGTTGGGATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGTGGACGT 1305
Query 1369 CACGCTGTGAAAGATCGGCTGAAAGAGTTGGGATATGAACTC-GATGATGAGAAATTGAA 1427
|| ||||| ||||| ||||| |||||||||||||||||| || | |||||||||||| ||
Sbjct 1306 CATGCTGTAAAAGACCGGCTTAAAGAGTTGGGATATGAAATCAG-TGATGAGAAATTCAA 1364
Query 1428 CG-CTGTCTTCTCACTATTCAGAGATTTAACCAAGAATAAAAAGAGAATCACGGATGCTG 1486
|| | ||||||||| || |||||| ||||||||| | ||||||||||||||||| | ||
Sbjct 1365 CGACA-TCTTCTCACGATACAGAGAATTAACCAAGGAGAAAAAGAGAATCACGGACGATG 1423
Query 1487 ATTTGAAGGCATTAGTAAC-ATCTAGCGATGAAATCTCTTTGGAGAAATTAAAC 1539
|| |||| |||||||| | | | ||||||||||| | || |||||||||
Sbjct 1424 ATCTGAAAGCATTAGTGGTGAACG-GTGATGAAATCTCATCAGATAAATTAAAC 1476
> Ahg326599 jgi|Araly1|326599|fgenesh1_pm.C_scaffold_6001819
Length=1503
Score = 1548 bits (838), Expect = 0.0
Identities = 1211/1391 (87%), Gaps = 26/1391 (2%)
Strand=Plus/Plus
Query 82 ATGGCTTCATCGCTTCTGACATCTTCCGTTATGATC-CCTACCACCGGTTCCACCGTGGT 140
|||||||| | ||||| ||||||| || ||||||| || ||||||||| ||||| | ||
Sbjct 1 ATGGCTTCGTTACTTCTCACATCTTTCGGTATGATCACC-ACCACCGGTCCCACCCTTGT 59
Query 141 TGGCCGGTCAGTGTTACCCTTTCAATCTTCCCTGCACTCTCTCCGCCTGACCCATTCGTA 200
|| |||||||||||||||| || |||||| | || ||| |||||||||||| |||
Sbjct 60 TGTCCGGTCAGTGTTACCCATTGGATCTTCTCAGCCCTCAATCCGCCTGACCCGCCCGTG 119
Query 201 CAAGAACCCCG-CATTGTTCATCTCATGTTGCTCTTCTGTGTCCAAAAATGCGGCAACTA 259
||| || ||| | |||||||||||||||||||| |||| ||||||||| | || |||||
Sbjct 120 CAACAA-GCCGACTTTGTTCATCTCATGTTGCTCCTCTGAGTCCAAAAAGGTGGTAACTA 178
Query 260 GTTCTACTGATCTCAAACCCGTTGTGGAACGGTGGCCGGAGTACATACCGAACAAGCTTC 319
|| ||||||| |||||||| | |||||||||||||| |||||||||||||||||||| |
Sbjct 179 GTGCTACTGACCTCAAACCTATCGTGGAACGGTGGCCAGAGTACATACCGAACAAGCTCC 238
Query 320 CCGACGGA-AACTATGTGCGTGTATTCGACACGACGCTCCGTGACGGTGAACAATCTCCT 378
||||| | |||||||| |||||| |||||||||| || ||||| || |||||| ||||
Sbjct 239 CCGAC-AAGAACTATGTACGTGTACTCGACACGACACTTCGTGAGGGCGAACAAGCTCCA 297
Query 379 GGTGGATCCCTCACTCCGCCGCAGAAGCTAGAGATTGCCCGACAGCTCGCTAAACTCCGA 438
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 298 GGTGGATCCCTTACTCCGCCGCAGAAGCTAGAGATTGCCCGGCAACTCGCTAAACTCCGA 357
Query 439 GTAGACATCATGGAAGTCGGTTTTCCGGGATCATCTGAAGAAGAGTTAGAAACCATTAAG 498
||||||||||||||||||||||||||||| |||||||| |||||||| |||||| ||||
Sbjct 358 GTAGACATCATGGAAGTCGGTTTTCCGGGGTCATCTGATGAAGAGTTCGAAACCGTTAAA 417
Query 499 ACCATCGCCAAGACTGTGGGGAATGAGGTGGATGAGGAAACAGGTTACGTCCCTGTGATA 558
|| ||||| ||||| ||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct 418 ACTATCGCTAAGACCGTGGGGAATGAGGTGGATGTGGAAACAGGTTATGTCCCGGTGATA 477
Query 559 TGCGCCATAGCTCGATGCA-AACATAGAGACATTGAGGC-GACTTGGGAGGCGCTGAAGT 616
| | || | || ||||||| || |||||||| ||||||| | ||||| ||||| ||||||
Sbjct 478 TCCACCCTCGCACGATGCATAA-ATAGAGACGTTGAGGCCG-CTTGGAAGGCGGTGAAGT 535
Query 617 ACGCGAAGAGGCCAAGGATACT-CGTATTCACATCTACTAGTGACATTCACATGAAATAT 675
|||||||||||||||||||| | | |||| |||||||||||||| ||||||||||| |||
Sbjct 536 ACGCGAAGAGGCCAAGGATA-TGCATATTTACATCTACTAGTGATATTCACATGAACTAT 594
Query 676 AAGTTGAAAAAGACTCAAGAAGAAGTGATTGAGATGGCCGTGAGTAGTATTAGGTTTGCT 735
||||||||||||||| ||||||||||||| |||||| || |||||||||||||||| |||
Sbjct 595 AAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGTCCTTGAGTAGTATTAGGTTCGCT 654
Query 736 AAAAGCTTGGGCTTCAATGACATCCAGTTTGGGTGCGAAGATGGCGGCAGGTCGGACAAG 795
|||||||| |||||| |||||||||| ||||| |||||||| ||| |||||||||| |||
Sbjct 655 AAAAGCTTAGGCTTCCATGACATCCAATTTGGTTGCGAAGACGGCTGCAGGTCGGAGAAG 714
Query 796 GA-TTTCCTATGCAAGATTCTAGGAGAAGCCATAAAAGCCGGTGTTACGGT-GGTGACCA 853
|| ||| |||| ||||||||||||||||| |||||||| |||| ||| | |||| ||
Sbjct 715 GAGTTTG-TATGTAAGATTCTAGGAGAAGCGATAAAAGCGGGTGCTACT-TCGGTGTGCA 772
Query 854 TCG-GTGATACGGTAGGGATCAACATGCCACATGAATACGGGGAACTCGTGAC-TTATCT 911
||| | || ||||||||||||| |||||||||||||| ||| ||||||||||| || | |
Sbjct 773 TCGCG-GACACGGTAGGGATCACCATGCCACATGAATTCGGAGAACTCGTGACCTT-TGT 830
Query 912 CAAAGCAAACACCCCTGGAATTGACGATGTTGTCGTC-GCTGTTCATTGTCACAACGACC 970
|||||||||||| || |||||||| ||||||||| || || |||||||||||||||||||
Sbjct 831 CAAAGCAAACACTCCAGGAATTGATGATGTTGTCTTCAGC-GTTCATTGTCACAACGACC 889
Query 971 TTGGTCTTGCAACCGCCAACTCAATCGCCGGTATACGTGCGGGAGCAAGACAGGTCGAAG 1030
|||||||||| ||||| ||| ||||||| | | || |||| |||| ||||| ||||||
Sbjct 890 TTGGTCTTGCTACCGCAAACACAATCGCTGCTGTATGTGCCGGAGTGAGACAATTCGAAG 949
Query 1031 TAACTATCAACGGAATTGGTGAAAGAAGTGGCAATGCGTCGCTTGAGGAGGTCGTGATGG 1090
|||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||
Sbjct 950 TAACAATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGG 1009
Query 1091 CTTTGAAATGTCGAGGGGCATATGTGATCAATGGGGTTTACACAAAAATAGACACACGCC 1150
|||||||||||||||| |||||| | || |||| |||||||||| ||||||||||||||
Sbjct 1010 CTTTGAAATGTCGAGGAGCATATCTTATGGATGGTGTTTACACAAGAATAGACACACGCC 1069
Query 1151 AAATCATGGCTACCAGCAAGATGGTTCAAGAGTACACGGGCTTGTATGTTCAAGCACATA 1210
|||| |||||||| |||||||||||||||||| | || ||||||||||||||| ||||||
Sbjct 1070 AAATTATGGCTACTAGCAAGATGGTTCAAGAGCATACCGGCTTGTATGTTCAACCACATA 1129
Query 1211 AGCCCATAGTTGGAG-CGAACTGTTTTGTTCATGAGAGCGGCATTCATCAGGATGGAATA 1269
|||| |||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1130 AGCCAATAGTTGGAGAC-AACTGTTTTGTTCATGAAAGCGGCATTCACCAGGATGGAATA 1188
Query 1270 TTGAAAAATAGGAGTACTTATGAGATCTTATCACCAGAAGATATTGGGATTGTAAAATCT 1329
|| |||||| | ||||| |||||||| ||||||||||||||| |||| || ||||||||
Sbjct 1189 TTAAAAAATCGAAGTACATATGAGATTTTATCACCAGAAGATGTTGGAATCGTAAAATCG 1248
Query 1330 CAAAATTCCGGCCTTGTTCTTGGAAAGCTTAGTGGACGTCACGCTGTGAAAGATC-GGCT 1388
|||||||| ||| |||||||||||||||||||||||||||| ||| | ||||| | ||||
Sbjct 1249 CAAAATTCAGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCTATAAAAGA-CAGGCT 1307
Query 1389 GAAAGAGTTGGGATATGAACTCGATGATGAGAAATTGAACGCTGTCTTCTCACTATTCAG 1448
|||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||
Sbjct 1308 TAAAGAGTTGGGATATGAAATCGATGATGAGAAATTCAACGAAATCTTCTCACGATTCAG 1367
Query 1449 AGATTTAACCA 1459
|||||||||||
Sbjct 1368 AGATTTAACCA 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5