BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23020.1
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941820 jgi|Araly1|941820|scaffold_602364.1 2390 0.0
Ahg326599 jgi|Araly1|326599|fgenesh1_pm.C_scaffold_6001819 1748 0.0
Ahg941819 jgi|Araly1|941819|scaffold_602363.1 1513 0.0
> Ahg941820 jgi|Araly1|941820|scaffold_602364.1
Length=1551
Score = 2390 bits (1294), Expect = 0.0
Identities = 1471/1557 (94%), Gaps = 10/1557 (1%)
Strand=Plus/Plus
Query 62 TCTCCTACTTTCTCTATAGTAATGGCTTCGTTACTTCTCACATCGTCGAGTATGATAACC 121
|||||||| | |||||||||||||| |||||| ||||||||||| || ||||||||||||
Sbjct 1 TCTCCTACGTACTCTATAGTAATGGTTTCGTTTCTTCTCACATCTTCCAGTATGATAACC 60
Query 122 ACTAGC-TGTCGCTCCATGGTTCTCCGGTCAGGGTTACCCATCGGATCTT-CTTTTCCCT 179
|| | | |||| |||||||||||||||||||||||||||||| ||||||| | ||| |||
Sbjct 61 ACCA-CATGTCCCTCCATGGTTCTCCGGTCAGGGTTACCCATTGGATCTTCCCTTT-CCT 118
Query 180 CTCTTCGCCTGACCCGTCCATACGACAAGGCGACTCTGTTCGTCTCATGTTGCTCCGCTG 239
||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| |||
Sbjct 119 CTCTTCGCCTGACCCGTCCATACAACAAGGCGACTTTGTTCACCTCATGTTACTCTTCTG 178
Query 240 AGTCCAAAAAGGTGGCAACTAGTGCTACTGATCTCAAACCTATCATGGAACGGAGGCCGG 299
|||||||||||||||||| ||||| |||||||||||||| | ||||||||||||| |
Sbjct 179 AGTCCAAAAAGGTGGCAAGTAGTG---CTGATCTCAAACCTGCCGTGGAACGGAGGCCAG 235
Query 300 AGTACATTCCGAACAAGCTTCCCCACAAGAACTATGTGCGTGTATTAGACACGACGCTTC 359
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 236 AGTACATACCGAACAAGCTTCCTCACAAGAACTATGTTCGTGTATTAGACACGACGCTCC 295
Query 360 GTGACGGTGAACAATCTCCCGGTGCAGCACTTACT-CCACCGCAGAAGTTAGAGATTGCC 418
|||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 296 GTGATGGTGAACAATCTCCCGGTGCAGCACTTA-TCCCACCGCAGAAGCTAGAGATTGCC 354
Query 419 AGGCAGCTAGCTAAACTCCGAGTAGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAG 478
| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 CGACAGCTTGCTAAACTCCGAGTTGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAG 414
Query 479 GAAGAATTCGAAGCTATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAA 538
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAAGAGTTCGAAGCCATTAAAACCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAA 474
Query 539 ACCGGTTACGTTCCTGTGATATGCGGCATTGCACGATGCAAAAAGAGAGACATCGAGGCA 598
|| |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 475 ACAGGTTACGTCCCTGTGATATGCGGCATTGCCCGATGCAAAAATAGAGACATTGAGGCG 534
Query 599 ACTTGGGAGGCACTGAAGTATGCGAAGAGGCCGAGGGTAATGCTATTCACATCTACTAGT 658
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 535 GCTTGGGAGGCACTGAAGTATGCGAAGAGGCCCAGGGTAATACTATTCACATCTACTAGT 594
Query 659 GAAATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTG 718
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTG 654
Query 719 AACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AACAGTGTTAAGTACGCTAAAAGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGAT 714
Query 779 GGCGGCAGGACGGAGAAAGATTTTATATGTAAGATTCTAGGAGAATCGATAAAAGCGGGT 838
||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||||
Sbjct 715 GGCGGCAGGACGGAGAAGGATTTTCTATGTAAGATTCTAGGAGAAACGATTAAAGCGGGT 774
Query 839 GCAACCACGGTGGGGTTTGCGGACACGGTCGGGATCAACATGCCGCAAGAATTCGGAGAA 898
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 775 GCAACCACGGTGGGCTTTGCGGACACGGTCGGGATCAACATGCCGCCAGAATTCGGAGAA 834
Query 899 CTCGTGGCCTATGTCATAGAAAACACTCCAGGGGCTGATGATATTGTCTTCGCCATTCAT 958
|||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||
Sbjct 835 CTCGTGGCCTATGTCAAAGAAAACACTCCTGGAGCTGATGATATTGTCGTCGCCATTCAT 894
Query 959 TGTCATAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTGCGGGAGCA 1018
|| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 895 TGCCACAACGACCTTGGTGTTGCTACCGCCAACACAATATCCGGTATATGTGGGGGAGCA 954
Query 1019 AGACAAGTCGAAGTGACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAA 1078
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGACAAGTAGAAGTAACGATCAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAA 1014
Query 1079 GAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATCTCTGATGGATGGTGTTTACACAAAA 1138
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1015 GAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATATCTTATGGATGGTGTTTACACAAAA 1074
Query 1139 ATAGACTCACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTAT 1198
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTAT 1134
Query 1199 GTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCAC 1194
Query 1259 CAGGATGGAATATTGAAAAATCGAAGTACATATGAGATCTTATCACCAGAAGATGTTGGG 1318
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 CAGGATGGAATATTGAAAAATCGAAGTACATATGAGATTTTATCACCAGAAGATGTTGGG 1254
Query 1319 ATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGCGGACGTCATGCTGTA 1378
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1255 ATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCTGTA 1314
Query 1379 AAAGACCGGCTTAAAGAGTTGGGATATGAAATCAGTGATGAGAAATTCAACGACATCTTC 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 AAAGACCGGCTTAAAGAGTTGGGATATGAAATCAGTGATGAGAAATTCAACGACATCTTC 1374
Query 1439 TCACGATACAGAGAATTAACGAAGGACAAAAAGAGAATCACAGACGCTGATCTGAAGGCA 1498
|||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| |||
Sbjct 1375 TCACGATACAGAGAATTAACCAAGGAGAAAAAGAGAATCACGGACGATGATCTGAAAGCA 1434
Query 1499 TTAGTGGTGAACGGTGCTGAAATCTCATCAGAAAAATTAAACAGTAAAGGAATTAACGAC 1558
|||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 1435 TTAGTGGTGAACGGTGATGAAATCTCATCAGATAAATTAAACAGTAAAGGAATCAACAAC 1494
Query 1559 CTTATGTCAAGCCCTCAGATTTCCGCTGTTGTATAAGTTTGGGAAGACATT-GTGTA 1614
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1495 CTTTTGTCAAGCCCTCAGATTTCCGCTGTTGTATAAGTTTGTAAAGACATTTGTGTA 1551
> Ahg326599 jgi|Araly1|326599|fgenesh1_pm.C_scaffold_6001819
Length=1503
Score = 1748 bits (946), Expect = 0.0
Identities = 1331/1518 (88%), Gaps = 21/1518 (1%)
Strand=Plus/Plus
Query 83 ATGGCTTCGTTACTTCTCACATC-GTCGAGTATGATAACCACTAGCTGTCGCTCCATGGT 141
||||||||||||||||||||||| ||| ||||||| ||||| | | ||| | || | ||
Sbjct 1 ATGGCTTCGTTACTTCTCACATCTTTCG-GTATGATCACCACCACCGGTCCCACCCTTGT 59
Query 142 TCTCCGGTCAGGGTTACCCATCGGATCTTCTTTTCCCTCTCTTCGCCTGACCCGTCCATA 201
| ||||||||| ||||||||| ||||||||| ||||| | ||||||||||| || |
Sbjct 60 TGTCCGGTCAGTGTTACCCATTGGATCTTCTCAGCCCTCAATCCGCCTGACCCGCCCGTG 119
Query 202 CGACAAGGCGACTCTGTTCGTCTCATGTTGCTCCGCTGAGTCCAAAAAGGTGGCAACTAG 261
| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||| ||||||
Sbjct 120 CAACAAGCCGACTTTGTTCATCTCATGTTGCTCCTCTGAGTCCAAAAAGGTGGTAACTAG 179
Query 262 TGCTACTGATCTCAAACCTATCATGGAACGGAGGCCGGAGTACATTCCGAACAAGCTTCC 321
||||||||| |||||||||||| |||||||| |||| |||||||| |||||||||| |||
Sbjct 180 TGCTACTGACCTCAAACCTATCGTGGAACGGTGGCCAGAGTACATACCGAACAAGC-TCC 238
Query 322 CC-ACAAGAACTATGTGCGTGTATTAGACACGACGCTTCGTGACGGTGAACAATCTCCCG 380
|| ||||||||||||| |||||| | |||||||| |||||||| || |||||| |||| |
Sbjct 239 CCGACAAGAACTATGTACGTGTACTCGACACGACACTTCGTGAGGGCGAACAAGCTCCAG 298
Query 381 GTGCAGCACTTACTCCACCGCAGAAGTTAGAGATTGCCAGGCAGCTAGCTAAACTCCGAG 440
||| | | |||||||| ||||||||| ||||||||||| |||| || |||||||||||||
Sbjct 299 GTGGATCCCTTACTCCGCCGCAGAAGCTAGAGATTGCCCGGCAACTCGCTAAACTCCGAG 358
Query 441 TAGACATCATGGAAGTTGGTTTTCCGGTGTCGTCTGAGGAAGAATTCGAAGCTATTAAAA 500
|||||||||||||||| |||||||||| ||| ||||| ||||| |||||| | ||||||
Sbjct 359 TAGACATCATGGAAGTCGGTTTTCCGGGGTCATCTGATGAAGAGTTCGAAACCGTTAAAA 418
Query 501 CCATCGCCAAGACCGTGGGGAACGAGGTGGATGAGGAAACCGGTTACGTTCCTGTGATAT 560
| ||||| |||||||||||||| |||||||||| |||||| ||||| || || |||||||
Sbjct 419 CTATCGCTAAGACCGTGGGGAATGAGGTGGATGTGGAAACAGGTTATGTCCCGGTGATAT 478
Query 561 GCGGCATTGCACGATGCAAAAAGAGAGACATCGAGGCAACTTGGGAGGCACTGAAGTATG 620
| | | |||||||||| ||| |||||| | ||||| ||||| |||| ||||||| |
Sbjct 479 CCACCCTCGCACGATGCATAAATAGAGACGTTGAGGCCGCTTGGAAGGCGGTGAAGTACG 538
Query 621 CGAAGAGGCCGAGGGTAATGC-TATTCACATCTACTAGTGAAATTCACATGAAATATAAG 679
|||||||||| ||| | |||| |||| |||||||||||||| ||||||||||| ||||||
Sbjct 539 CGAAGAGGCCAAGGAT-ATGCATATTTACATCTACTAGTGATATTCACATGAACTATAAG 597
Query 680 TTGAAAAAGACTAAAGAAGAAGTGATCGAGATGGCCGTGAACAGTGTTAAGTACGCTAAA 739
||||||||||||||||||||||||||||||||| || ||| ||| ||| || |||||||
Sbjct 598 TTGAAAAAGACTAAAGAAGAAGTGATCGAGATGTCCTTGAGTAGTATTAGGTTCGCTAAA 657
Query 740 AGCTTGGGCTTCAAAGACATCCAATTTGGGTGCGAAGATGGCGGCAGGACGGAGAAAGAT 799
||||| |||||| | |||||||||||||| |||||||| ||| ||||| ||||||| ||
Sbjct 658 AGCTTAGGCTTCCATGACATCCAATTTGGTTGCGAAGACGGCTGCAGGTCGGAGAAGGAG 717
Query 800 TTTATATGTAAGATTCTAGGAGAATCGATAAAAGCGGGTGCAACCACGGTGGGGTTTGCG 859
||| |||||||||||||||||||| |||||||||||||||| || ||||| | | |||
Sbjct 718 TTTGTATGTAAGATTCTAGGAGAAGCGATAAAAGCGGGTGCTACTTCGGTGTGCATCGCG 777
Query 860 GACACGGTCGGGATCAACATGCCGCAAGAATTCGGAGAACTCGTGGCCTATGTCATAGAA 919
|||||||| ||||||| |||||| || |||||||||||||||||| ||| ||||| || |
Sbjct 778 GACACGGTAGGGATCACCATGCCACATGAATTCGGAGAACTCGTGACCTTTGTCAAAGCA 837
Query 920 AACACTCCAGGGGCTGATGATATTGTCTTC-GCCATTCATTGTCATAACGACCTTGGTGT 978
||||||||||| ||||||| |||||||| | | |||||||||| |||||||||||| |
Sbjct 838 AACACTCCAGGAATTGATGATGTTGTCTTCAG-CGTTCATTGTCACAACGACCTTGGTCT 896
Query 979 TGCTACCGCCAACACAATATCCGGTATATGTGCGGGAGCAAGACAAGTCGAAGTGACGAT 1038
||||||||| |||||||| | | | ||||||| |||| |||||| ||||||| || ||
Sbjct 897 TGCTACCGCAAACACAATCGCTGCTGTATGTGCCGGAGTGAGACAATTCGAAGTAACAAT 956
Query 1039 CAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAACGGAATTGGTGAAAGAAGTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAA 1016
Query 1099 ATGTCGAGGAGAATCTCTGATGGATGGTGTTTACACAAAAATAGACTCACGCCAAATTAT 1158
||||||||||| || ||| ||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1017 ATGTCGAGGAGCATATCTTATGGATGGTGTTTACACAAGAATAGACACACGCCAAATTAT 1076
Query 1159 GGCTACAAGCAAGATGGTTCAAGAGCATACCGGCATGTATGTTCAACCACATAAGCCAAT 1218
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1077 GGCTACTAGCAAGATGGTTCAAGAGCATACCGGCTTGTATGTTCAACCACATAAGCCAAT 1136
Query 1219 AGTTGGAGACAACTGTTTTGTTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAA 1278
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1137 AGTTGGAGACAACTGTTTTGTTCATGAAAGCGGCATTCACCAGGATGGAATATTAAAAAA 1196
Query 1279 TCGAAGTACATATGAGATCTTATCACCAGAAGATGTTGGGATCGTAAAATCTG-AAAATT 1337
|||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||||||
Sbjct 1197 TCGAAGTACATATGAGATTTTATCACCAGAAGATGTTGGAATCGTAAAATC-GCAAAATT 1255
Query 1338 CTGGCATTGTTCTTGGAAAGCTTAGCGGACGTCATGCTGTAAAAGACCGGCTTAAAGAGT 1397
| ||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||
Sbjct 1256 CAGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCTATAAAAGACAGGCTTAAAGAGT 1315
Query 1398 TGGGATATGAAATC-AGTGATGAGAAATTCAACGACATCTTCTCACGATACAGAGAATTA 1456
|||||||||||||| | |||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 1316 TGGGATATGAAATCGA-TGATGAGAAATTCAACGAAATCTTCTCACGATTCAGAGATTTA 1374
Query 1457 ACGAAGGACAAAAAGAGAATCACAGACGCTGATCTGAAGGCATTAGTGGTGAACGGTGCT 1516
|| | | | || | | || |||||||||||||||||||||||||||||||||| |
Sbjct 1375 ACCA-GTA------GA-ATT-ACCGACGCTGATCTGAAGGCATTAGTGGTGAACGGTGAT 1425
Query 1517 GAAATCTCATCAGAAAAATTAAACAGTAAAGGAATTAACGACCTTATGTCAAGCCCTCAG 1576
|||||| ||||||| |||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 1426 GAAATCACATCAGAGAAATCAAACAGTAAAGGAATTAACAACCTTATGTCAAGTCCTCAT 1485
Query 1577 ATTTCCGCTGTTGTATAA 1594
|||||| |||||||||||
Sbjct 1486 ATTTCCTCTGTTGTATAA 1503
> Ahg941819 jgi|Araly1|941819|scaffold_602363.1
Length=1573
Score = 1513 bits (819), Expect = 0.0
Identities = 1257/1467 (86%), Gaps = 35/1467 (2%)
Strand=Plus/Plus
Query 55 TCTTT-TCTCTCCTACTTTCTCTATAGTAATGGCTTCGTTACTTCTCACATCGT-CGAGT 112
||||| | |||||||| | ||| ||||| |||||||| | |||||| ||||| | || ||
Sbjct 1 TCTTTCTTTCTCCTACATACTCCATAGTTATGGCTTCATCACTTCTGACATCTTCCG-GT 59
Query 113 ATGAT--A-ACCACTAGCTGTCGCTCCATGGTTCTCCGGTCAGGGTTACCC-ATCGGATC 168
||||| | ||||| | | || | || ||||| |||||||| ||||||| || |||
Sbjct 60 ATGATCCATACCAC-CGGT-TC-CACCGTGGTTGGCCGGTCAGTGTTACCCTTTC-AATC 115
Query 169 TTCTTTTCCCTCTCTTCGCCTGACCCGTCCATACGACAAGGCGAC-TCTGTTCGTCTCAT 227
||| | | ||||||||| || |||| ||||||| | ||| || | | | ||| ||||||
Sbjct 116 TTCCCTGCACTCTCTTCGTCTCACCCATCCATACAAGAAGCCGGCATAT-TTCATCTCAT 174
Query 228 GTTGCTCCGCTG-AGTCCAAAAA-GGTGGCAACTAGTGCTACTGATCTCAAACCTATCAT 285
||||||| ||| | |||||||| || |||||||| |||||||||||||||||| | |
Sbjct 175 GTTGCTCTTCTGTA-TCCAAAAATGG-GGCAACTAATGCTACTGATCTCAAACCCGTTGT 232
Query 286 GGAACGGAGGCCGGAGTACATTCCGAACAAGCTTCCCC-ACAAGAACTATGTGCGTGTAT 344
||||||| ||||||||||||| || ||||||| ||||| |||| ||||||||||||||||
Sbjct 233 GGAACGGTGGCCGGAGTACATACCAAACAAGC-TCCCCGACAACAACTATGTGCGTGTAT 291
Query 345 TAGACACGACGCTTCGTGACGGTGAACAATCTCCCGGTGCAGCACTTACTCCACCGCAGA 404
| |||||||| || ||||| ||||||||| ||||||||| | | |||||||| |||||||
Sbjct 292 TCGACACGACACTCCGTGATGGTGAACAAGCTCCCGGTGGATCCCTTACTCCGCCGCAGA 351
Query 405 AGTTAGAGATTGCCAGGCAGCTAGCTAAACTCCGAGTAGACATCATGGAAGTTGGTTTTC 464
|| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 352 AGCTAGAGATTGCCCGGCAGCTTGCTAAACTCCGAGTAGACATCATGGAAGTCGGTTTTC 411
Query 465 CGGTG-TCGTCTGAGGAAGAATTCGAAGCTATTAAAACCATCGCCAAGACCGTGGGGAAC 523
||| | || ||||| ||||| || ||| | ||||||| ||||| ||||||||||||||
Sbjct 412 CGG-GATCATCTGAAGAAGAGTTAGAAACCGTTAAAACTATCGCTAAGACCGTGGGGAAT 470
Query 524 GAGGTGGATGAGGAAACCGGTTACGTTCCTGTGATATGCGGCATTGCACGATGCAAAAAG 583
||||||||||||||||| |||||||| || || ||||||| ||| |||||| ||||| |
Sbjct 471 GAGGTGGATGAGGAAACAGGTTACGTCCCCGTAATATGCGCCATCGCACGAAGCAAACAT 530
Query 584 AGAGACATCGAGGCAACTTGGGAGGCACTGAAGTATGCGAAGAGGCCGAGGGTAATGC-T 642
|||||||| ||||| |||||||||| | ||||| ||||||||||| ||| || | | |
Sbjct 531 AGAGACATTGAGGCGGCTTGGGAGGCGGTAAAGTACGCGAAGAGGCCAAGGATACT-CAT 589
Query 643 ATTCACATCTACTAGTGAAATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAAGT 702
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 590 ATTCACATCTACTAGTGACATTCACATGAAATATAAGTTGAAAAAGACTAAAGAAGAGGT 649
Query 703 GATCGAGATGGCCGTGAACAGTGTTAAG-TACGCTAAAAGCTTGGGCTTCAAAGACATCC 761
||| ||||||||||||| ||| | | | | |||||||||||||||||||||||||||||
Sbjct 650 GATTGAGATGGCCGTGAGTAGTATCAGGCT-CGCTAAAAGCTTGGGCTTCAAAGACATCC 708
Query 762 AATTTGGGTGCGAAGATGGCGGCAGGACGGAGAAAGATTTTATATGTAAGATTCTAGGAG 821
|||||||||||||||||||||||||| |||| || || || |||| |||||||||||||
Sbjct 709 AATTTGGGTGCGAAGATGGCGGCAGGTCGGACAAGGAGTTCCTATGCAAGATTCTAGGAG 768
Query 822 AATCGATAAAAGCGGGTGCAACCACGGTG-GGGTTTGCGGACACGGTCGGGATCAACATG 880
|| | ||||||||||||| || |||| | | || |||||||| ||||||||||||
Sbjct 769 AAGCAATAAAAGCGGGTGTTACGGTGGTGAACG-TCGCAGACACGGTAGGGATCAACATG 827
Query 881 CCGCAAGAAT-TCGGAGAACTCGTGGCCTATGTCATAGAAAACACTCCAGGGGCTGATGA 939
|| || |||| | ||||||||||| ||||| ||| || ||||||||| || ||||||
Sbjct 828 CCACATGAATAT-GGAGAACTCGTAACCTATCTCAAAGCAAACACTCCTGGAATTGATGA 886
Query 940 TATTGTCTTC-GCCATTCATTGTCATAACGACCTTGGTGTTGCTACCGCCAACACAATAT 998
||| |||||| | |||||||||| ||||| |||||| ||||||| |||||| ||||
Sbjct 887 TATCGTCTTCAG-TGTTCATTGTCACAACGATCTTGGTCTTGCTACTGCCAACTCAATCG 945
Query 999 CCGGTATATGTGCGGGAGCAAGACAAGTCGAAGTGACGATCAACGGAATTGGTGAAAGAA 1058
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 946 CCGGTATACGTGCGGGAGCAAGACAAGTGGAAGTAACGATCAACGGAATTGGTGAGAGAA 1005
Query 1059 GTGGGAATGCGCCGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGAATCTCTGA 1118
||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 1006 GTGGGAATGCGTCGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGCATATGTGA 1065
Query 1119 TGGATGGTGTTTACACAAAAATAGACTCACGCCAAATTATGGCTACAAGCAAGATGGTTC 1178
| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1066 TCAATGGTGTTTACACAAGAATAGACACACGCCAAATTATGGCTACAAGCAAGATGGTTC 1125
Query 1179 AAGAGCATACCGGCATGTATGTTCAACCACATAAGCCAATAGTTGGAGACAACTGTTTTG 1238
||||| | |||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1126 AAGAGTACACCGGCTTGTATGTTCAACCACATAAGCCCATAGTTGGAGCCAACTGTTTTG 1185
Query 1239 TTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAATCGAAGTACATATGAGATCT 1298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1186 TTCATGAGAGCGGCATTCACCAGGATGGAATATTGAAAAATCGGAGTACATATGAGATCT 1245
Query 1299 TATCACCAGAAGATGTTGGGATCGTAAAATCTGAAAATTCTGGCATTGTTCTTGGAAAGC 1358
|||||||||||||| ||||| ||||||||||| |||| || ||| |||||||||||||||
Sbjct 1246 TATCACCAGAAGATATTGGGGTCGTAAAATCTCAAAACTCCGGCCTTGTTCTTGGAAAGC 1305
Query 1359 TTAGCGGACGTCATGCTGTAAAAGACCGGCTTAAAGAGTTGGGATATGAAATC-AGTGAT 1417
|||| |||||||||||||| ||||| ||||| || ||||||||||||||| || | ||||
Sbjct 1306 TTAGTGGACGTCATGCTGTGAAAGATCGGCTGAACGAGTTGGGATATGAACTCGA-TGAT 1364
Query 1418 GAGAAATTCAACGACATCTTCTCACGATACAGAGAAT-TAACGAAGGACAAAAAGAGAAT 1476
|||||| | |||||| |||||||||| | |||||| | |||| ||| | |||||||| ||
Sbjct 1365 GAGAAACTGAACGACGTCTTCTCACGGTTCAGAGA-TCTAACCAAGCATAAAAAGAGGAT 1423
Query 1477 CACAGACGCTGATCTGAAGGCATTAGT 1503
||| || |||||| ||||||| |||||
Sbjct 1424 CACGGATGCTGATATGAAGGCGTTAGT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67534004385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5