BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23030.1
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489156 jgi|Araly1|489156|fgenesh2_kg.6__2290__AT5G23030.1 1417 0.0
> Ahg489156 jgi|Araly1|489156|fgenesh2_kg.6__2290__AT5G23030.1
Length=927
Score = 1417 bits (767), Expect = 0.0
Identities = 878/931 (94%), Gaps = 9/931 (1%)
Strand=Plus/Plus
Query 1 TCTCCCCCTCCCAAATAACCGCCGATAAACAATGCTCCGGCTAAGCAACGCCGCCGTAAT 60
|||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 TCTCTCCGTCCCAAATAACCGCCAATAAACAATGCTCCGACTAAGCAACGCCGCCGTAAT 60
Query 61 AACAACCAATGCAATTCTCGCATTGATCGGCCTCGCCGCTCTATCTTTTTCCGTCTACGT 120
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AACAACCAATGCAATCCTCGCATTGATCGGCCTCGCCGCTCTATCTTTCTCCGTCTACGT 120
Query 121 CTACGTTCAAGGCCCATCACAGTGTCAACGTTTCGTTCAAAACCCTCTCATTGTAACTGC 180
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 121 CTACGTTCAAGGCCCTTCACAGTGTCAACGCTTCGTTCAAAACCCTCTCATCGTAACCGC 180
Query 181 GGCT-CTCCTCTTCTTCATCTCGTCCTTAGGCCTTATCGCTGCTCTCTACGGTAGCCACA 239
| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 181 -GATCCTCCTCTTCTTCATCTCTTCCTTAGGCCTTATCGCTGCTCTCTACGGAAGCCACA 239
Query 240 TCATCATCACActctatctcttcttccttttcctctccattcttctgcttcttgtcctct 299
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TCATCATCACTCTCTACCTCTTCTTCCTTTTCCTCTCCATTCTTCTCCTTCTTGTCCTCT 299
Query 300 ctgtctttatcttcctcGTCACGAATCCCACCGCCGGAAAAGCGTTATCCGGTAGAGGAA 359
| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 300 CCGTCTTTATCTTCCTCGTCACGAATCCCACCGCCGGAAAAGCGTTTTCCGGCAAAGGAA 359
Query 360 TAGGCAATGTCAAGACCGGAGATTAT-CAGAACTGGATCGGGAACCATTTCCTTCGTGGG 418
|||||||||| ||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 360 TAGGCAATGTTAAGACCGGAGA-TCTCCAGAACTGGATCGGGAACCATTTCCTTCGTGGG 418
Query 419 AAGAATTGGGAAGGGATCACCAAATGTTTGTCTGATTCTAGGGTTTGTAAAAGGTTTGGT 478
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAACTGGGAAGGGATCACCAAATGTTTGTCTGATTCTAGGGTTTGTAAAAGGTTTGGT 478
Query 479 CCACGTGACATTGACTTTGACTCCAAACATCTCTCTAATGTACAGTTTGGTTGTTGTCGA 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 CCACGTGACGTTGACTTTGACTCCAAACATCTCTCTAATGTACAGTTTGGTTGCTGTCGA 538
Query 539 CCTCCCGTAGAATGTGGGTTCGAATCAAAGAATGCCACGTGGTGGACAGTTCCTGCCACA 598
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 539 CCTCCCGTAGAATGTGGGTTCGAATCAAAGAATGCCACGTGGTGGGCAGTTCCAGCGACA 598
Query 599 GCGACTACGGCGATTATAGGGGATTGTAAGGCATGGAGTAACACGCAGAGACAGTTATGT 658
|||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 599 GCGACTACGGCGATCACAGGGGATTGTAAGACATGGAGTAACACGCAGAGCCAGTTATGT 658
Query 659 TACGCGTGCGAGTCGTGTAAGATTGGAGTTTTAAAAGGGATAAGAAAAAGATGGAGGATA 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TACGGGTGCGAGTCGTGTAAGATTGGAGTTTTAAAAGGGATAAGAAAAAGATGGAGGATA 718
Query 719 CTTATTGTCGTCAATCTCCTTCTTATCCTTCTCGTCGTTTTTCTTTACTCGTGTGGCTGT 778
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 719 CTTCTTGTCGTCAATCTCCTTCTTATCCTTCTCGTCGTGTTTCTTTACTCATGTGGCTGT 778
Query 779 TGCGTGAGAAAGAACAATCGTGTTCCATGGAAGCGCCGGTTCTTCTAACAACTCTTTCCA 838
|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct 779 TGTGTGAGAAAGAACAATCGTGTTCCATGGAAGCGCCGGTTCTTTTAAAAACTCCTTCCA 838
Query 839 TTT-GTTTTCCAAATGA-TTAATTAATTCTTTATATATT-TTTCTGTTTTTGAAATATTT 895
||| |||| |||||| | ||||||||||||| || ||| ||| ||||||||||||||||
Sbjct 839 TTTCGTTT-CCAAATTAATTAATTAATTCTTCCTA-ATTGTTTATGTTTTTGAAATATTT 896
Query 896 AGTTGATGTTTGATGTTTCTTTTAGTGAAGT 926
|||||||||||||||||||||||||||||||
Sbjct 897 AGTTGATGTTTGATGTTTCTTTTAGTGAAGT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34348748217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5