BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23030.1 Length=926 Score E Sequences producing significant alignments: (Bits) Value Ahg489156 jgi|Araly1|489156|fgenesh2_kg.6__2290__AT5G23030.1 1417 0.0 > Ahg489156 jgi|Araly1|489156|fgenesh2_kg.6__2290__AT5G23030.1 Length=927 Score = 1417 bits (767), Expect = 0.0 Identities = 878/931 (94%), Gaps = 9/931 (1%) Strand=Plus/Plus Query 1 TCTCCCCCTCCCAAATAACCGCCGATAAACAATGCTCCGGCTAAGCAACGCCGCCGTAAT 60 |||| || ||||||||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 1 TCTCTCCGTCCCAAATAACCGCCAATAAACAATGCTCCGACTAAGCAACGCCGCCGTAAT 60 Query 61 AACAACCAATGCAATTCTCGCATTGATCGGCCTCGCCGCTCTATCTTTTTCCGTCTACGT 120 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 AACAACCAATGCAATCCTCGCATTGATCGGCCTCGCCGCTCTATCTTTCTCCGTCTACGT 120 Query 121 CTACGTTCAAGGCCCATCACAGTGTCAACGTTTCGTTCAAAACCCTCTCATTGTAACTGC 180 ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || Sbjct 121 CTACGTTCAAGGCCCTTCACAGTGTCAACGCTTCGTTCAAAACCCTCTCATCGTAACCGC 180 Query 181 GGCT-CTCCTCTTCTTCATCTCGTCCTTAGGCCTTATCGCTGCTCTCTACGGTAGCCACA 239 | | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 181 -GATCCTCCTCTTCTTCATCTCTTCCTTAGGCCTTATCGCTGCTCTCTACGGAAGCCACA 239 Query 240 TCATCATCACActctatctcttcttccttttcctctccattcttctgcttcttgtcctct 299 |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 240 TCATCATCACTCTCTACCTCTTCTTCCTTTTCCTCTCCATTCTTCTCCTTCTTGTCCTCT 299 Query 300 ctgtctttatcttcctcGTCACGAATCCCACCGCCGGAAAAGCGTTATCCGGTAGAGGAA 359 | |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct 300 CCGTCTTTATCTTCCTCGTCACGAATCCCACCGCCGGAAAAGCGTTTTCCGGCAAAGGAA 359 Query 360 TAGGCAATGTCAAGACCGGAGATTAT-CAGAACTGGATCGGGAACCATTTCCTTCGTGGG 418 |||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 360 TAGGCAATGTTAAGACCGGAGA-TCTCCAGAACTGGATCGGGAACCATTTCCTTCGTGGG 418 Query 419 AAGAATTGGGAAGGGATCACCAAATGTTTGTCTGATTCTAGGGTTTGTAAAAGGTTTGGT 478 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AAGAACTGGGAAGGGATCACCAAATGTTTGTCTGATTCTAGGGTTTGTAAAAGGTTTGGT 478 Query 479 CCACGTGACATTGACTTTGACTCCAAACATCTCTCTAATGTACAGTTTGGTTGTTGTCGA 538 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 479 CCACGTGACGTTGACTTTGACTCCAAACATCTCTCTAATGTACAGTTTGGTTGCTGTCGA 538 Query 539 CCTCCCGTAGAATGTGGGTTCGAATCAAAGAATGCCACGTGGTGGACAGTTCCTGCCACA 598 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| Sbjct 539 CCTCCCGTAGAATGTGGGTTCGAATCAAAGAATGCCACGTGGTGGGCAGTTCCAGCGACA 598 Query 599 GCGACTACGGCGATTATAGGGGATTGTAAGGCATGGAGTAACACGCAGAGACAGTTATGT 658 |||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 599 GCGACTACGGCGATCACAGGGGATTGTAAGACATGGAGTAACACGCAGAGCCAGTTATGT 658 Query 659 TACGCGTGCGAGTCGTGTAAGATTGGAGTTTTAAAAGGGATAAGAAAAAGATGGAGGATA 718 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TACGGGTGCGAGTCGTGTAAGATTGGAGTTTTAAAAGGGATAAGAAAAAGATGGAGGATA 718 Query 719 CTTATTGTCGTCAATCTCCTTCTTATCCTTCTCGTCGTTTTTCTTTACTCGTGTGGCTGT 778 ||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 719 CTTCTTGTCGTCAATCTCCTTCTTATCCTTCTCGTCGTGTTTCTTTACTCATGTGGCTGT 778 Query 779 TGCGTGAGAAAGAACAATCGTGTTCCATGGAAGCGCCGGTTCTTCTAACAACTCTTTCCA 838 || ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||| Sbjct 779 TGTGTGAGAAAGAACAATCGTGTTCCATGGAAGCGCCGGTTCTTTTAAAAACTCCTTCCA 838 Query 839 TTT-GTTTTCCAAATGA-TTAATTAATTCTTTATATATT-TTTCTGTTTTTGAAATATTT 895 ||| |||| |||||| | ||||||||||||| || ||| ||| |||||||||||||||| Sbjct 839 TTTCGTTT-CCAAATTAATTAATTAATTCTTCCTA-ATTGTTTATGTTTTTGAAATATTT 896 Query 896 AGTTGATGTTTGATGTTTCTTTTAGTGAAGT 926 ||||||||||||||||||||||||||||||| Sbjct 897 AGTTGATGTTTGATGTTTCTTTTAGTGAAGT 927 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34348748217 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5