BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23035.1 Length=267 Score E Sequences producing significant alignments: (Bits) Value Ahg326601 jgi|Araly1|326601|fgenesh1_pm.C_scaffold_6001821 278 2e-74 > Ahg326601 jgi|Araly1|326601|fgenesh1_pm.C_scaffold_6001821 Length=267 Score = 278 bits (150), Expect = 2e-74 Identities = 234/272 (86%), Gaps = 15/272 (6%) Strand=Plus/Plus Query 1 ATGATGTTGAGCAAAGTAGTTCTTCTTGCACTTCTGTTATCTCTTTCATGTTTGTGGGTA 60 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGTGTTGAGCAAAGTAGTTCTTCTTGCACTTCTGTTATCTCTTTCATGTTTGTGGGTA 60 Query 61 GCTAAAGCATCGGAACA-AAGAACGAGAGTTAGTGAAGTAGTGAGAGAGGCCGAAATACA 119 ||||||||||||||| | |||||||||||||||| ||| ||||||||| ||| ||| ||| Sbjct 61 GCTAAAGCATCGGAA-AGAAGAACGAGAGTTAGTCAAGAAGTGAGAGATGCCAAAAAACA 119 Query 120 -CGATGGAGGGCAATGCACCGACGACGA-CATTTGCAACAAGAATTGTCTGGATTGTATT 177 || |||||||| ||||||||||| || || |||| || ||| ||||| ||| ||||| Sbjct 120 ACG-TGGAGGGCCTTGCACCGACGA-GAACACTTGCCACCAGATTTGTCCGGACTGTATA 177 Query 178 GCTAG-ACAATGTATCTTCCAACAATGTGTTTGCTCTAAGCGTTTCTTCCCTCCTAATTC 236 | | ||||||||||||| |||||||||||||||||||| ||||| |||||||| | | Sbjct 178 A-TCGCACAATGTATCTTCAAACAATGTGTTTGCTCTAAGTGTTTCCTCCCTCCT--T-C 233 Query 237 ACAACCAAATTT-ACGTGTTAAAAAACATTAA 267 |||| || ||| | ||||||||| |||||| Sbjct 234 ACAAGCAGCTTTTA-GTGTTAAAA--CATTAA 262 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9317935684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5