BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23035.1
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326601 jgi|Araly1|326601|fgenesh1_pm.C_scaffold_6001821 278 2e-74
> Ahg326601 jgi|Araly1|326601|fgenesh1_pm.C_scaffold_6001821
Length=267
Score = 278 bits (150), Expect = 2e-74
Identities = 234/272 (86%), Gaps = 15/272 (6%)
Strand=Plus/Plus
Query 1 ATGATGTTGAGCAAAGTAGTTCTTCTTGCACTTCTGTTATCTCTTTCATGTTTGTGGGTA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGTTGAGCAAAGTAGTTCTTCTTGCACTTCTGTTATCTCTTTCATGTTTGTGGGTA 60
Query 61 GCTAAAGCATCGGAACA-AAGAACGAGAGTTAGTGAAGTAGTGAGAGAGGCCGAAATACA 119
||||||||||||||| | |||||||||||||||| ||| ||||||||| ||| ||| |||
Sbjct 61 GCTAAAGCATCGGAA-AGAAGAACGAGAGTTAGTCAAGAAGTGAGAGATGCCAAAAAACA 119
Query 120 -CGATGGAGGGCAATGCACCGACGACGA-CATTTGCAACAAGAATTGTCTGGATTGTATT 177
|| |||||||| ||||||||||| || || |||| || ||| ||||| ||| |||||
Sbjct 120 ACG-TGGAGGGCCTTGCACCGACGA-GAACACTTGCCACCAGATTTGTCCGGACTGTATA 177
Query 178 GCTAG-ACAATGTATCTTCCAACAATGTGTTTGCTCTAAGCGTTTCTTCCCTCCTAATTC 236
| | ||||||||||||| |||||||||||||||||||| ||||| |||||||| | |
Sbjct 178 A-TCGCACAATGTATCTTCAAACAATGTGTTTGCTCTAAGTGTTTCCTCCCTCCT--T-C 233
Query 237 ACAACCAAATTT-ACGTGTTAAAAAACATTAA 267
|||| || ||| | ||||||||| ||||||
Sbjct 234 ACAAGCAGCTTTTA-GTGTTAAAA--CATTAA 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9317935684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5