BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23040.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489157 jgi|Araly1|489157|fgenesh2_kg.6__2291__AT5G23040.1 1382 0.0
> Ahg489157 jgi|Araly1|489157|fgenesh2_kg.6__2291__AT5G23040.1
Length=924
Score = 1382 bits (748), Expect = 0.0
Identities = 856/908 (94%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 94 CGACGGAGGAACCATGTCCTCGTCTCTTCTTCTCTCCGGTTCTACTGTATCTTCTTCGTT 153
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 23 CGACGGAGGAACCATGTCCTCGTCTCTTCTTCTCTCCGGTTCTGCTGTATCTTCTTCGTT 82
Query 154 TATCGCTCCATCTAAGCCTTCTCTCGTACGAAATTCCAGTAAGACATCACTGTTACCATT 213
|||||||||||| |||| |||| | ||||||||||||| |||||||||||||||||||||
Sbjct 83 TATCGCTCCATCGAAGCTTTCTTTGGTACGAAATTCCAATAAGACATCACTGTTACCATT 142
Query 214 TCGTAATGTTTCGAGAAGCTTCAAAACCGTCAAGTGCACCGTTGATTCTTCATATGGAGG 273
||| |||||||| ||||||||||||| ||| | |||| ||||||||||||||||||||||
Sbjct 143 TCGGAATGTTTCAAGAAGCTTCAAAAGCGTTAGGTGCTCCGTTGATTCTTCATATGGAGG 202
Query 274 CAATGTTCCCACGTTCCCTCGGACGAGAGTTTGGGACCCGTACAAACGTCTAGGAGTTAG 333
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 203 TAACGTCCCCACGTTCCCTCGGACCAGAGTTTGGGACCCGTACAAACGTCTAGGAGTTAG 262
Query 334 TCCATATGCTTCCGAGGAAGAAATCTGGGCCTCTCGTAACTTTCTTTTACAGCAGTACGC 393
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 263 TCCATATGCTTCCGAGGAAGAAATCTGGGCCTCTCGTAACTTTCTCTTACAGCAGTATGC 322
Query 394 TGGACATGAAAGAAGCGAAGAGTCTATAGAAGGAGCCTTTGAGAAGCTTCTCATGTCTAG 453
||||||||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 323 TGGACATGAGAGAAGCGAAGAATCAATAGAAGGCGCCTTTGAGAAGCTTCTGATGTCTAG 382
Query 454 TTTTATCAGAAGGAAGAAGACTAAAATCAATCTTAAATCAAAGTTGAAGAAGAAAGTTGA 513
||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||
Sbjct 383 TTTTATCAGAAGGAAGAAGTCTAAAATCAATCTTAAAACAAGGTTGAAGAAGAAAGTTGA 442
Query 514 GGAATCTCCTCCGTGGCTCAAAGCTCTTCTCGATTTCGTTGAAATGCCTCCCATGGACAC 573
|||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 443 GGAATCTCCTCCCTGGCTCAAAGCTCTTCTCGATTTTGTTGAAATGCCTCCCAAGGACAC 502
Query 574 TATTTTCAGAAGACTTTTCCTCTTTGCCTTCATGGGTGGTTGGAGTATCATGAACTCTGC 633
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 503 TATATTCAGAAGACTCTTCCTCTTTGCCTTCATGGGTGGTTGGAGTATCATGAACTCAGC 562
Query 634 AGAAGGCGGTCCTGCGTTTCAGGTGGCGGTATCATTGGCTGCGTGCGTATATTTTCTGAA 693
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 563 AGAAGGCGGTCCTGCCTTTCAGGTGGCGGTATCGTTGGCTGCGTGCGTATATTTCCTGAA 622
Query 694 TGAGAAGACAAAGAGCTTGGGGAGAGCTTGCTTAATCGGAATTGGAGCTTTAGTTGCCGG 753
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 623 TGAGAAGACAAAGAGCTTGGGGAGAGCTTGCCTAATCGGAATTGGAGCTTTAGCTGCCGG 682
Query 754 GTGGTTCTGCGGTTCGTTAATCATTCCCATGATTCCGACGTTTCTCATTCAGCCTACATG 813
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 683 GTGGTTCTGCGGTTCGATAATCATTCCCATGATTCCAACGTTTCTCATTCAGCCGACATG 742
Query 814 GACACTCGAGCTCCTAACATCACTGGTCGCTTATGTGTTTTTGTTTCTTTCTTGTACTTT 873
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 743 GACACTCGAGCTCCTAACATCATTGGTTGCTTATGTGTTTTTGTTTCTTTCTTGTACTTT 802
Query 874 CCTCAAGTAAGTTACGTTGTGGTTTTATCCAAACTCTTTTT-GTTCTTTTCGCCCAGACA 932
||||||||||||| || || ||| |||||||| |||||| |||||||| ||||| |||
Sbjct 803 CCTCAAGTAAGTTGCG--GT--TTT-ATCCAAACGCTTTTTTGTTCTTTT-GCCCAAACA 856
Query 933 TTTACAGAACCTTTCGGAAAAATTAGTGAAAGTTGTTAAGTGTTTGATTGGTTTCACAGT 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TTTACAGAACCTTTCGGAAAAATTAGTGAAAGTTGTTAAGTGTTTGATTGGTTTCACAGT 916
Query 993 TTTCTTTT 1000
||||||||
Sbjct 917 TTTCTTTT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5