BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23050.1 Length=2450 Score E Sequences producing significant alignments: (Bits) Value Ahg489158 jgi|Araly1|489158|fgenesh2_kg.6__2292__AT5G23050.1 3725 0.0 > Ahg489158 jgi|Araly1|489158|fgenesh2_kg.6__2292__AT5G23050.1 Length=2461 Score = 3725 bits (2017), Expect = 0.0 Identities = 2294/2428 (94%), Gaps = 17/2428 (1%) Strand=Plus/Plus Query 29 TCTCTCaaaaaaaTGGCGTACAAATCCCTAAATTCAATCACCAAATCTGATATCGAAGCT 88 |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 45 TCTCTCTCAAAAATGGCGTACAAATCCCTAAATTCAATCACCAGATCTGATATCGAAGCT 104 Query 89 CTAGGAATCTCCGGTGATGTCTCCGAGAAGCTTCTCAGAGATCTCGAAGACATTATTCAC 148 |||||||||||||||||||||||||||||||| |||| ||| ||||| || || |||||| Sbjct 105 CTAGGAATCTCCGGTGATGTCTCCGAGAAGCTACTCAAAGACCTCGATGAGATCATTCAC 164 Query 149 GGTTCATCCACGCCGCCGGAGACGTGGATTCAGATTTCTCGGCGGATCCTTCACCCTAAT 208 ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 165 GGTTCCTCCATGCCGCCGGAGACGTGGATTCAGATTTCTCGGCGAATCCTTCACCCTAAT 224 Query 209 CTCCCTTTCTCTTTTCACCAGATGATGTATTACGGTTGCTACAAGGATTTCGGACCCGAC 268 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 225 CTCCCTTTCTCTTTTCACCAGATGATGTATTATGGTTGCTACAAGGATTTCGGACCCGAC 284 Query 269 CTACCCGCTTGGATACCCGACCCGAAGGTTGCTTCTTTAACTAACGTAGGCAAGTTATTA 328 | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 285 CCACCCGCTTGGTTACCCGACCCGAAGGTTGCTTCTTTAACTAACGTAGGCAAGTTACTA 344 Query 329 GAAAAGCGAGGCAAAGAGTTTTTAGGTGGAAATTACAAGAATCCAGTTTCGAGTTTCTCC 388 |||| ||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 345 GAAAGGCGTGGCAAAGAGTTTTTAGGTGAAAATTACAAGAATCCAATTTCGAGTTTCTCG 404 Query 389 AGTTTTCAAGAGTTCTCTGTATCAAATCCTGAGGTGTATTGGAAAACTGTATTGGATGAG 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 405 AGTTTTCAAGAGTTCTCTGTATCAAATCCTGAGGTGTATTGGAAAACTGTATTGGATGAG 464 Query 449 TTAAACATATTGTTCTCTGTACCTCCTAAGTGTATATTAGAGAAGGATACTTCTGGAGAT 508 ||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 465 TTAAACATAGTGTTTTCTGTACCTCCTAAGTGTATATTAGAGAAAGATACATCTGGAGAT 524 Query 509 AATCCTGGAGGTAAATGGCTTCCTGGAGCTTACTTGAATCCTGCAAGAAATTGTTTGACT 568 ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 525 AATCCTGGAGGTATTTGGCTTCCTGGAGCTTACTTGAATCCTGCTAGAAATTGTTTGACT 584 Query 569 AATGGTTTCAAGAGAAGATTGGATGATATTGTGATTCGATGGCGTGATGAAGGAAGCGAT 628 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 585 AATGGTTGCAAGAGAAGATTGGATGATATTGTGATTCGATGGCGTGATGAAGGAAGTGAT 644 Query 629 GATCTTCCTGTGAATACCATGACACTTTTGGAGTTAAGATCGCAGGTCTGGTTAGCTGCA 688 |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 645 GATCTTCCTGTGAATACCATGACACTTTTGGAGTTACGATCGCAAGTCTGGTTAGCTGCA 704 Query 689 CATGCTCTTAGTGCTTTGGGTTTGGAGGAAGAGTCAGCAATCGCGGTTGATATGCCAATG 748 ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| Sbjct 705 CATGCTCTTAGTGCTTTGGATTTAGAGGAAGAGTCAGCAATCGCTGTTGATATGCCAATG 764 Query 749 AATGTTGAGTCTGTGATCATATACCTTGCTATTGTTTTAGCTGGCCACGTAGTTGTTTCA 808 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 765 AATGTTGAGTCTGTGATCATATACCTTGCTATTGTCTTAGCAGGCCACGTAGTTGTTTCA 824 Query 809 ATAGCTGATAGTTTCTCTCCCCGTGAAATATCAACACGGCTTAAAATATCAAAAGCAAAA 868 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 825 ATAGCTGACAGTTTCTCTCCCCGTGAAATATCAACACGGCTTAAAATTTCAAAAGCAAAA 884 Query 869 GCCATTTTTACTCAGGATGTGATTATTCGTGGTGATAAAAGTATTCCTCTCTATAGAAGA 928 ||||| || || ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 885 GCCATATTCACACAGGATGTGATCATTCGTGGTGATAAAAGTATTCCCCTCTATAGAAGA 944 Query 929 GTCGTTGATGCAGAAGCACCTCTGGCAATTGTTGTCCCAGCTAGAGGCTCTAGCTGCAGA 988 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 945 GTCATTGATGCAGAAGCACCTCTGGCAATTGTTGTCCCAGCTAGAGGCTCTAGCTGCAGA 1004 Query 989 ATGAAGCTGCGCGAGAAGGATTTGTCTTGGAACAACTTTTTGGGAAACGCAAGAAATTTG 1048 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1005 ATGAAGCTGCGCGAGAAGGATTTGTCTTGGAACAACTTTTTGGGAAAGGCAAGAAATTTG 1064 Query 1049 AGAGGCGTGGAATATGTTGCTGCAGAGAAACCAGCAGGAGCTTACACGAACATCCTTTTC 1108 ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1065 AGAGGTGTGGAATATGTTGCTGTAGAGAAACCAGCAGGAGCTTACACGAACATCCTTTTC 1124 Query 1109 TCATCAGGAACCACTGGTGAGCCAAAGGCTATTCCATGGACGAACATTTCTCCTCTGAAA 1168 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1125 TCATCCGGAACCACTGGTGAGCCAAAGGCTATTCCATGGACGAACATTTCTCCTCTGAAA 1184 Query 1169 TCTGCTGCTGATGCTTGGTGCCATTTGGATGTTCAGCGGGGGGATGTTGTTGCTTGGCCG 1228 |||||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||| Sbjct 1185 TCTGCTGCTGATGCCTGGTGCCACTTGGATGTTCATCGAGGGGATGTTGTTGCTTGGCCG 1244 Query 1229 ACCAACCTTGGGTGGATGATGGGACCGTGGCTTGTTTATGCTTCCTTGATCAATGGGGCT 1288 ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct 1245 ACCAACCTTGGGTGGATGATGGGTCCGTGGCTTGTTTATGCTTCTTTGATAAATGGGGCT 1304 Query 1289 TGCATGGGATTATACAATGGATCACCTCTTGGTCCTACCTTTGCCAAGTTTGTGCAGGAT 1348 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1305 TGCATGGCATTATACAATGGATCACCTCTTGGCCCTACCTTTGCCAAGTTTGTGCAGGAT 1364 Query 1349 GCCGAGGTATCAGTGCTAGGCGTGATACCAAGCATTGTCCGGACATGGCAAAACTCAAAC 1408 ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1365 GCCGAGGTAACAGTTCTAGGCGTGATACCAAGCATTGTTCGGACATGGCAAAACTCGAAC 1424 Query 1409 TCCACTTCAGGCTATGATTGGTCACGGATCCGTTGTTTTGGTTCCACTGGTGAAGCTTCA 1468 || ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1425 TCTACTTCTGGCTATGATTGGTCACAAATCCGTTGTTTTGGTTCCACTGGTGAAGCTTCA 1484 Query 1469 AACATAGACGAGTATCTATGGTTAATGGGCAGAGCACATTACAAACCCGTAATCGAGTAT 1528 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1485 AACATAGACGAGTATCTATGGCTGATGGGCAGAGCACATTACAAACCCGTAATCGAGTAT 1544 Query 1529 TGTGGCGGAACTGAGATTGGAGGCAGTTTTATCTCAGGTTCTTTGCTTCAACCTCAGTCG 1588 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1545 TGTGGCGGAACTGAGATTGGAGGCAGTTTTATCTCAGGTTCTTTGCTTCAGCCTCAGTCG 1604 Query 1589 CTGGCTGCTTTTAGCACAGCTGCCATGGGTTGCAAGCTTTTCATTCTCGATGAAGATAGC 1648 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 1605 CTGGCTGCTTTTAGCACAGCTGCCATGGGTTGCAAGCTTTTCATTCTCGGTGAAGATGGC 1664 Query 1649 AATCCTATTCCTCCATATGCTGCAGGAGTAGGCGAATTGGCTCTTTGTCCTCACATGTTT 1708 ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| Sbjct 1665 AATCCTATTCCTCCATACGCAGCAGGAGTAGGCGAATTGGCTCTTTGTCCTCACCTGTTT 1724 Query 1709 GGAGCTTCAAGCACTCTTCTGAACGGTAATCACTTCAAAGTTTACTTCCAAGGAATGCCC 1768 |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1725 GGAGCTTCAAGCACCCTCCTGAACGGAAATCACTTCAAAGTTTACTTCCAGGGAATGCCC 1784 Query 1769 ACCTTCCAAGGACAGATCTTACGAAGACATGGGGATTTATTTGAACGGACTTCAAAAGGA 1828 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 1785 ACCTTCCAAGGACAGATTTTAAGAAGACATGGGGATTTATTTGAACGGACTTCAAAAGGA 1844 Query 1829 TACTACCGTGCTCATGGACGTGCTGATGACACAATGAATCTTGGTGGTATAAAGGTCGGT 1888 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1845 TACTACCGTGCTCACGGACGTGCTGATGACACAATGAATCTTGGTGGCATAAAGGTCGGT 1904 Query 1889 TCTATTGAGATCGAACGAGTCTGTAATTCCGTTGATGACAGTGTTCTGGAGACAGCAGCC 1948 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1905 TCTATTGAGATCGAACGAGTCTGTAATTCCGTAGATGACAGTGTTCTGGAGACAGCAGCC 1964 Query 1949 ATTGGTGTTCCACCTCCTAGTGGGGGTCCTGAGCAGCTAGTAATCGCTGTTGTGTTCAAG 2008 || |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 1965 ATCGGTGTTCCACCTCCTAGTGGCGGTCCTGAGCAGCTAGTAATCACTGTTGTGTTCAAG 2024 Query 2009 AGCCCAGAATTTTC-AAATCCCGACTTGAACCTGTTGAAGAAGTCCTTCAACTCCGAGAT 2067 ||||||||| | || ||| | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 2025 AGCCCAGAAATATCGAAA-CACGATTTAAACCTCTTGAAGAAGTCCTTCAACTCTGAGAT 2083 Query 2068 ACAAAAGAAACTGAATCCTTTGTTCAAGGTATCATCTGTTGTGACTCTTCCTTCTCTACC 2127 |||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| Sbjct 2084 ACAAAAGAAACTGAATCCATTGTTCAAGGTATCATCTGTTGTGACTCTGCCTTCTTTACC 2143 Query 2128 GAGGACGGCCACAAATAAGGTTATGAGAAGAGTTCTAAGGCAACAGCTTACTCAGACTGG 2187 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 2144 AAGGACGGCCACAAATAAGGTTATGAGAAGAGTTCTAAGGCAACAACTTACTCAGACTAG 2203 Query 2188 TCTAAACTCGAAGCTATGAGGCAATTTCTCTCTAATACCAAATGTTGGGTTTTGCCATTC 2247 |||||| ||||||||||||||||||| || || ||||||||||||||| ||||||||||| Sbjct 2204 TCTAAAGTCGAAGCTATGAGGCAATTGCTATCCAATACCAAATGTTGGTTTTTGCCATTC 2263 Query 2248 ACAGGAAACAATATTTGGTCTTTGTTGTAAGAATCCACATCCATGTCTGTATCAAGAAAT 2307 ||| | || | || |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct 2264 ACA--A--CA-T-TT-GGTCTTTGTTGTAA-AATCCACAACCATGTCTGTATCAATAAAT 2315 Query 2308 GATTCTCAATTCACATAAATAA-GAGTGGAGCTAGTGTACATACATCTAGTGAGATCCTT 2366 |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| Sbjct 2316 GATTCTCAATTCACATAAATAAAGAGTGGATCTAGTGTACATACATGTAGTGAGATCCTT 2375 Query 2367 GTCCCTC--AATTTGAATCTCAACTTTGGTTATGATTTTATTTCGTAACAAAAACC--AT 2422 ||| | ||| | | ||||| ||||||||||||||||||||| |||||||||| || Sbjct 2376 CTCCATGTGAATCTCA--CTCAATTTTGGTTATGATTTTATTTCGAAACAAAAACCTGAT 2433 Query 2423 ATTAAATAAAACTTGCTATCCAAAACGC 2450 |||||||| |||||||||||||||||| Sbjct 2434 ATTAAATAGGACTTGCTATCCAAAACGC 2461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92330753880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5