BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23050.1
Length=2450
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489158 jgi|Araly1|489158|fgenesh2_kg.6__2292__AT5G23050.1 3725 0.0
> Ahg489158 jgi|Araly1|489158|fgenesh2_kg.6__2292__AT5G23050.1
Length=2461
Score = 3725 bits (2017), Expect = 0.0
Identities = 2294/2428 (94%), Gaps = 17/2428 (1%)
Strand=Plus/Plus
Query 29 TCTCTCaaaaaaaTGGCGTACAAATCCCTAAATTCAATCACCAAATCTGATATCGAAGCT 88
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 45 TCTCTCTCAAAAATGGCGTACAAATCCCTAAATTCAATCACCAGATCTGATATCGAAGCT 104
Query 89 CTAGGAATCTCCGGTGATGTCTCCGAGAAGCTTCTCAGAGATCTCGAAGACATTATTCAC 148
|||||||||||||||||||||||||||||||| |||| ||| ||||| || || ||||||
Sbjct 105 CTAGGAATCTCCGGTGATGTCTCCGAGAAGCTACTCAAAGACCTCGATGAGATCATTCAC 164
Query 149 GGTTCATCCACGCCGCCGGAGACGTGGATTCAGATTTCTCGGCGGATCCTTCACCCTAAT 208
||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 165 GGTTCCTCCATGCCGCCGGAGACGTGGATTCAGATTTCTCGGCGAATCCTTCACCCTAAT 224
Query 209 CTCCCTTTCTCTTTTCACCAGATGATGTATTACGGTTGCTACAAGGATTTCGGACCCGAC 268
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 225 CTCCCTTTCTCTTTTCACCAGATGATGTATTATGGTTGCTACAAGGATTTCGGACCCGAC 284
Query 269 CTACCCGCTTGGATACCCGACCCGAAGGTTGCTTCTTTAACTAACGTAGGCAAGTTATTA 328
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 285 CCACCCGCTTGGTTACCCGACCCGAAGGTTGCTTCTTTAACTAACGTAGGCAAGTTACTA 344
Query 329 GAAAAGCGAGGCAAAGAGTTTTTAGGTGGAAATTACAAGAATCCAGTTTCGAGTTTCTCC 388
|||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 345 GAAAGGCGTGGCAAAGAGTTTTTAGGTGAAAATTACAAGAATCCAATTTCGAGTTTCTCG 404
Query 389 AGTTTTCAAGAGTTCTCTGTATCAAATCCTGAGGTGTATTGGAAAACTGTATTGGATGAG 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGTTTTCAAGAGTTCTCTGTATCAAATCCTGAGGTGTATTGGAAAACTGTATTGGATGAG 464
Query 449 TTAAACATATTGTTCTCTGTACCTCCTAAGTGTATATTAGAGAAGGATACTTCTGGAGAT 508
||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 465 TTAAACATAGTGTTTTCTGTACCTCCTAAGTGTATATTAGAGAAAGATACATCTGGAGAT 524
Query 509 AATCCTGGAGGTAAATGGCTTCCTGGAGCTTACTTGAATCCTGCAAGAAATTGTTTGACT 568
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 525 AATCCTGGAGGTATTTGGCTTCCTGGAGCTTACTTGAATCCTGCTAGAAATTGTTTGACT 584
Query 569 AATGGTTTCAAGAGAAGATTGGATGATATTGTGATTCGATGGCGTGATGAAGGAAGCGAT 628
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 585 AATGGTTGCAAGAGAAGATTGGATGATATTGTGATTCGATGGCGTGATGAAGGAAGTGAT 644
Query 629 GATCTTCCTGTGAATACCATGACACTTTTGGAGTTAAGATCGCAGGTCTGGTTAGCTGCA 688
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 645 GATCTTCCTGTGAATACCATGACACTTTTGGAGTTACGATCGCAAGTCTGGTTAGCTGCA 704
Query 689 CATGCTCTTAGTGCTTTGGGTTTGGAGGAAGAGTCAGCAATCGCGGTTGATATGCCAATG 748
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||
Sbjct 705 CATGCTCTTAGTGCTTTGGATTTAGAGGAAGAGTCAGCAATCGCTGTTGATATGCCAATG 764
Query 749 AATGTTGAGTCTGTGATCATATACCTTGCTATTGTTTTAGCTGGCCACGTAGTTGTTTCA 808
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 765 AATGTTGAGTCTGTGATCATATACCTTGCTATTGTCTTAGCAGGCCACGTAGTTGTTTCA 824
Query 809 ATAGCTGATAGTTTCTCTCCCCGTGAAATATCAACACGGCTTAAAATATCAAAAGCAAAA 868
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 825 ATAGCTGACAGTTTCTCTCCCCGTGAAATATCAACACGGCTTAAAATTTCAAAAGCAAAA 884
Query 869 GCCATTTTTACTCAGGATGTGATTATTCGTGGTGATAAAAGTATTCCTCTCTATAGAAGA 928
||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 885 GCCATATTCACACAGGATGTGATCATTCGTGGTGATAAAAGTATTCCCCTCTATAGAAGA 944
Query 929 GTCGTTGATGCAGAAGCACCTCTGGCAATTGTTGTCCCAGCTAGAGGCTCTAGCTGCAGA 988
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GTCATTGATGCAGAAGCACCTCTGGCAATTGTTGTCCCAGCTAGAGGCTCTAGCTGCAGA 1004
Query 989 ATGAAGCTGCGCGAGAAGGATTTGTCTTGGAACAACTTTTTGGGAAACGCAAGAAATTTG 1048
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1005 ATGAAGCTGCGCGAGAAGGATTTGTCTTGGAACAACTTTTTGGGAAAGGCAAGAAATTTG 1064
Query 1049 AGAGGCGTGGAATATGTTGCTGCAGAGAAACCAGCAGGAGCTTACACGAACATCCTTTTC 1108
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1065 AGAGGTGTGGAATATGTTGCTGTAGAGAAACCAGCAGGAGCTTACACGAACATCCTTTTC 1124
Query 1109 TCATCAGGAACCACTGGTGAGCCAAAGGCTATTCCATGGACGAACATTTCTCCTCTGAAA 1168
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCATCCGGAACCACTGGTGAGCCAAAGGCTATTCCATGGACGAACATTTCTCCTCTGAAA 1184
Query 1169 TCTGCTGCTGATGCTTGGTGCCATTTGGATGTTCAGCGGGGGGATGTTGTTGCTTGGCCG 1228
|||||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1185 TCTGCTGCTGATGCCTGGTGCCACTTGGATGTTCATCGAGGGGATGTTGTTGCTTGGCCG 1244
Query 1229 ACCAACCTTGGGTGGATGATGGGACCGTGGCTTGTTTATGCTTCCTTGATCAATGGGGCT 1288
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 1245 ACCAACCTTGGGTGGATGATGGGTCCGTGGCTTGTTTATGCTTCTTTGATAAATGGGGCT 1304
Query 1289 TGCATGGGATTATACAATGGATCACCTCTTGGTCCTACCTTTGCCAAGTTTGTGCAGGAT 1348
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1305 TGCATGGCATTATACAATGGATCACCTCTTGGCCCTACCTTTGCCAAGTTTGTGCAGGAT 1364
Query 1349 GCCGAGGTATCAGTGCTAGGCGTGATACCAAGCATTGTCCGGACATGGCAAAACTCAAAC 1408
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1365 GCCGAGGTAACAGTTCTAGGCGTGATACCAAGCATTGTTCGGACATGGCAAAACTCGAAC 1424
Query 1409 TCCACTTCAGGCTATGATTGGTCACGGATCCGTTGTTTTGGTTCCACTGGTGAAGCTTCA 1468
|| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1425 TCTACTTCTGGCTATGATTGGTCACAAATCCGTTGTTTTGGTTCCACTGGTGAAGCTTCA 1484
Query 1469 AACATAGACGAGTATCTATGGTTAATGGGCAGAGCACATTACAAACCCGTAATCGAGTAT 1528
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1485 AACATAGACGAGTATCTATGGCTGATGGGCAGAGCACATTACAAACCCGTAATCGAGTAT 1544
Query 1529 TGTGGCGGAACTGAGATTGGAGGCAGTTTTATCTCAGGTTCTTTGCTTCAACCTCAGTCG 1588
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1545 TGTGGCGGAACTGAGATTGGAGGCAGTTTTATCTCAGGTTCTTTGCTTCAGCCTCAGTCG 1604
Query 1589 CTGGCTGCTTTTAGCACAGCTGCCATGGGTTGCAAGCTTTTCATTCTCGATGAAGATAGC 1648
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1605 CTGGCTGCTTTTAGCACAGCTGCCATGGGTTGCAAGCTTTTCATTCTCGGTGAAGATGGC 1664
Query 1649 AATCCTATTCCTCCATATGCTGCAGGAGTAGGCGAATTGGCTCTTTGTCCTCACATGTTT 1708
||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||
Sbjct 1665 AATCCTATTCCTCCATACGCAGCAGGAGTAGGCGAATTGGCTCTTTGTCCTCACCTGTTT 1724
Query 1709 GGAGCTTCAAGCACTCTTCTGAACGGTAATCACTTCAAAGTTTACTTCCAAGGAATGCCC 1768
|||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1725 GGAGCTTCAAGCACCCTCCTGAACGGAAATCACTTCAAAGTTTACTTCCAGGGAATGCCC 1784
Query 1769 ACCTTCCAAGGACAGATCTTACGAAGACATGGGGATTTATTTGAACGGACTTCAAAAGGA 1828
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1785 ACCTTCCAAGGACAGATTTTAAGAAGACATGGGGATTTATTTGAACGGACTTCAAAAGGA 1844
Query 1829 TACTACCGTGCTCATGGACGTGCTGATGACACAATGAATCTTGGTGGTATAAAGGTCGGT 1888
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1845 TACTACCGTGCTCACGGACGTGCTGATGACACAATGAATCTTGGTGGCATAAAGGTCGGT 1904
Query 1889 TCTATTGAGATCGAACGAGTCTGTAATTCCGTTGATGACAGTGTTCTGGAGACAGCAGCC 1948
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1905 TCTATTGAGATCGAACGAGTCTGTAATTCCGTAGATGACAGTGTTCTGGAGACAGCAGCC 1964
Query 1949 ATTGGTGTTCCACCTCCTAGTGGGGGTCCTGAGCAGCTAGTAATCGCTGTTGTGTTCAAG 2008
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1965 ATCGGTGTTCCACCTCCTAGTGGCGGTCCTGAGCAGCTAGTAATCACTGTTGTGTTCAAG 2024
Query 2009 AGCCCAGAATTTTC-AAATCCCGACTTGAACCTGTTGAAGAAGTCCTTCAACTCCGAGAT 2067
||||||||| | || ||| | ||| || ||||| |||||||||||||||||||| |||||
Sbjct 2025 AGCCCAGAAATATCGAAA-CACGATTTAAACCTCTTGAAGAAGTCCTTCAACTCTGAGAT 2083
Query 2068 ACAAAAGAAACTGAATCCTTTGTTCAAGGTATCATCTGTTGTGACTCTTCCTTCTCTACC 2127
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 2084 ACAAAAGAAACTGAATCCATTGTTCAAGGTATCATCTGTTGTGACTCTGCCTTCTTTACC 2143
Query 2128 GAGGACGGCCACAAATAAGGTTATGAGAAGAGTTCTAAGGCAACAGCTTACTCAGACTGG 2187
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 2144 AAGGACGGCCACAAATAAGGTTATGAGAAGAGTTCTAAGGCAACAACTTACTCAGACTAG 2203
Query 2188 TCTAAACTCGAAGCTATGAGGCAATTTCTCTCTAATACCAAATGTTGGGTTTTGCCATTC 2247
|||||| ||||||||||||||||||| || || ||||||||||||||| |||||||||||
Sbjct 2204 TCTAAAGTCGAAGCTATGAGGCAATTGCTATCCAATACCAAATGTTGGTTTTTGCCATTC 2263
Query 2248 ACAGGAAACAATATTTGGTCTTTGTTGTAAGAATCCACATCCATGTCTGTATCAAGAAAT 2307
||| | || | || |||||||||||||| |||||||| ||||||||||||||| ||||
Sbjct 2264 ACA--A--CA-T-TT-GGTCTTTGTTGTAA-AATCCACAACCATGTCTGTATCAATAAAT 2315
Query 2308 GATTCTCAATTCACATAAATAA-GAGTGGAGCTAGTGTACATACATCTAGTGAGATCCTT 2366
|||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 2316 GATTCTCAATTCACATAAATAAAGAGTGGATCTAGTGTACATACATGTAGTGAGATCCTT 2375
Query 2367 GTCCCTC--AATTTGAATCTCAACTTTGGTTATGATTTTATTTCGTAACAAAAACC--AT 2422
||| | ||| | | ||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 2376 CTCCATGTGAATCTCA--CTCAATTTTGGTTATGATTTTATTTCGAAACAAAAACCTGAT 2433
Query 2423 ATTAAATAAAACTTGCTATCCAAAACGC 2450
|||||||| ||||||||||||||||||
Sbjct 2434 ATTAAATAGGACTTGCTATCCAAAACGC 2461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92330753880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5