BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23060.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489159 jgi|Araly1|489159|fgenesh2_kg.6__2293__AT5G23060.1 1982 0.0
> Ahg489159 jgi|Araly1|489159|fgenesh2_kg.6__2293__AT5G23060.1
Length=1335
Score = 1982 bits (1073), Expect = 0.0
Identities = 1241/1320 (94%), Gaps = 19/1320 (1%)
Strand=Plus/Plus
Query 23 TGAAGAAACAGTTTGCAGACAACATTGAAGAGAAG-CTCTAAAGATTCTTTGTCTCTTTC 81
||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1 TGAAGAAACAGTTTGCAGACAACATTGAAGAGAAGAAT-TAGAGATTCTTTGTCTCTTTC 59
Query 82 TCTGTCGCATTGATTTGTAAAAAAGTGTGGCAGAGAGAAACCATGGCTATGGCGGAAATG 141
||||||||||||||| | |||||||||||||||| | ||| ||||||| ||||||| |||
Sbjct 60 TCTGTCGCATTGATTCG-AAAAAAGTGTGGCAGA-AAAAAACATGGCTTTGGCGGAGATG 117
Query 142 GCAACGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTACTAAGAAGACA 201
|| | ||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 118 GCTATGAAGTCTTCACTATCTGCAAAACTCACTCTTCCTTCTTCTTCTTCCAAGAAG--A 175
Query 202 CTGAGTCTGAGACAAGTCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCT 261
| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 C--A--CTGAGACAAATCTCTGTTTCACTTCCAACATCAACTTCAATCTCTCTGTTATCT 231
Query 262 CTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTCCCAAGGACCAAATC 321
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 232 CTCTTTGCATCTCCTCCTCATGAAGCTAAAGCTGCTGTTTCCATTTCCAAGGACCAAATC 291
Query 322 GTCTCCTCTCTCACTGAAGTGGAGAAAACAATCAACCAAGTTCAAGAAACTGGTTCTAGT 381
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 292 GTCTCCTCTATCACTGAAGTGGAGAAAACAATCAATCAAGTTCAAGAAACTGGTTCTAGT 351
Query 382 GTATTTGATGCAACGCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTTAAACCAGCTTTG 441
|| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 352 GTTTTTGATGCAACTCAGCGTGTGTTCCAAGTAGTAGGAGATGCTCTGAAACCAGCTTTG 411
Query 442 GACACTGCTTTACCCATT-GCAAAGCAAGCTGGTGAAGAAGCTATGAAGCTTGCTTCTCC 500
|||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct 412 GACACTGCTTTACC-ACTCGCAAAGCAAGCTGGTGAAGAAGCTATAAAGCTTGCTTCTCC 470
Query 501 TGCTTTCTCTGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTC 560
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TGCTTTCTCAGAAGCTTCAAAGAAAGCTCAAGAAGCAATGCAGAGCTCTGGTTTTGATTC 530
Query 561 TGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCACAACAGACGTCAAAAGC 620
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 531 AGAGCCTGTCTTTAATGCTGCAAAGACAGTAACAGATGTAGCTCAACAGACGACAAAAGC 590
Query 621 GATAGAAGATGCTAAACCGATTGCTTCATCGACCATGGATACGATTTCTTCAGCTGACCC 680
||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||| ||
Sbjct 591 GATAGAAGATGCTAAGCCGATTGCTTCGTCGACCATTGAGACGATTTCTTCAGCTGATCC 650
Query 681 TAGTGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGT 740
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 TAATGTCATTGTTGTTGCTGCTGGTGCTGCGTTTCTTGCTTACCTTCTTCTCCCTCCTGT 710
Query 741 TTTCTCTGCCATCTCTTTTAACTTCCGTGGTTACAAAGGTGATCTTACGCCGGCTCAAAC 800
|| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 711 TTGGTCTGCCATTTCTTTTAACTTCCGTGGATACAAAGGTGATCTCACGCCGGCTCAAAC 770
Query 801 GCTTGACCTTCTTTGCACCAAGAACTACTTGATGGTGGATATAAGATCAGAGAAAGACAA 860
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 771 GCTTGATCTTCTTTGCACCAAGAACTACTTGATGGTAGATATAAGATCAGAGAAAGACAA 830
Query 861 GGAGAAAGCCGGGATTCCACGGCTCCCTTCGAATGCTAAGAACCGCGTGATCTCCATTCC 920
|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 831 GGAGAAAGCCGGGATTCCACGGCTCCCTTCAAATGCTAAGAACCGTGTGATCGCCATTCC 890
Query 921 ATTAGAAGAACTACCAAACAAAGTAAAAGGAATCGTGAGGAACTCTAAACGAGTTGAAGC 980
||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 891 ATTAGAAGAACTACCGAACAAAGTAAAAGGAATTGTGAGGAACTCGAAACGGGTTGAAGC 950
Query 981 AGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAAAATCAACAAAGGCTCCAATATCAT 1040
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 951 AGAGATAGCAGCATTAAAGATTTCTTACCTCAAGAGAATCAACAAAGGCTCCAATATCAT 1010
Query 1041 CATCTTGGACTCGTACACGGATTCGGCTAAGATAGTGGCGAAAACGTTAAAGGTTCTCGG 1100
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1011 CATCTTGGACTCGTACTCGGATTCGGCTAAAATAGTGGCGAAAACGTTAAAGGTTCTCGG 1070
Query 1101 GTACAAGAATTGCTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAG 1160
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GTTCAAGAATTGTTATATTGTGACAGATGGATTCTCTGGTGGCAGAGGATGGTTGCAGAG 1130
Query 1161 CCGTTTAGGCACTGATTCTTACAACTTCTCGTTTGCACAAGTCTTGTCTCCATCGCGGAT 1220
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 1131 CCGGTTAGGCACTGATTCTTACAACTTCTCGTTCGCGCAAGTCTTGTCTCCATCGCGTAT 1190
Query 1221 TATCCCGGCAGCTTCGAGAAGCTTTGGCACTAGGTCCGGAACCAAGTTCCTTCCTAGCTC 1280
||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1191 TATCCCGGCAGCTTCTAGAAGTTTTGGCACTAGATCCGGAACCAAGCTCCTTCCTAGCTC 1250
Query 1281 CGACTGAAAA-CA-GAGGATA-TATATA-GTTTTACAAGTGTTGTTT-AGTATTCC-TTT 1334
||| |||||| || ||||||| |||||| | |||| ||||||||||| | |||||| |||
Sbjct 1251 CGAGTGAAAAACAAGAGGATACTATATATGGTTTAAAAGTGTTGTTTTA-TATTCCCTTT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5