BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23070.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941827 jgi|Araly1|941827|scaffold_602371.1 1107 0.0
> Ahg941827 jgi|Araly1|941827|scaffold_602371.1
Length=886
Score = 1107 bits (599), Expect = 0.0
Identities = 804/894 (90%), Gaps = 50/894 (6%)
Strand=Plus/Plus
Query 79 CAAATGTTTGGTGTTTCGATGAGAACATTAAtctcaccatctcttgctcccttctctctt 138
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 18 CAAATGTTTGGTGTTTCGATGAGAACATTAATCTCACCATCTCTTGCTCCTTTCTCTCTT 77
Query 139 catctccataaaccctctctcttctccaccgctcttcgcttctcct---t-----c-t-c 188
||||||| |||||| ||||||||||||||||||||||||||||||| | | | |
Sbjct 78 CATCTCCCTAAACCTTCTCTCTTCTCCACCGCTCTTCGCTTCTCCTCCCTCACCACTTCC 137
Query 189 A--A--TCAA-CAAC-ATA-A-CCCCCACAAATTCACCTCCTTCCACCATTTCCACCAGA 240
| | |||| |||| | | | ||||||||||||||||||| ||| ||||||||||||||
Sbjct 138 ACCATCTCAATCAACAACAGATCCCCCACAAATTCACCTCCCTCCGCCATTTCCACCAGA 197
Query 241 AAGCTACAAACGAAAGCGACGAGGGTAACATCATCATCATCATCTCAGCCGCTCTCCTCC 300
|| || || || || | | | | | | | | ||||||||||| |
Sbjct 198 AA---AC-TAC--AA---AC----G--A-A--AGC--GA-C--GGC-GCCGCTCTCCTTC 233
Query 301 TCATCTCCCGGCGAAATCCACGTCGTAGTCGGTCCAATGTTCTCCGGTAAAACAACAACA 360
||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||
Sbjct 234 TCAACTCCCGGCGAAATACACGTAATCGTCGGTCCAATGTTCTCCGGTAAAACAACAACG 293
Query 361 CTTCTCCGCCGTATACTCGCCGAAAGAGAAACCGGTAAA-AGAATCGCAATCATCAAATC 419
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 294 CTTCTCCGCCGTATCCTCGCCGAAAGAGAAACCGGTAAACA-AATCGCAATCATCAAATC 352
Query 420 CAACAAAGACACAAGATACTGCACCGAATCAATAGTTACTCACGACGGTGAGAAATACCC 479
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 353 CAATAAAGACACAAGATACTGCACCGAATCAATAGTTACTCACGACGGTGAGAAATTCCC 412
Query 480 TTGCTGGTCACTCCCCGATCTCTCGTCCTTCAAAGAGAGATTCGGATTCGACGACTACGA 539
||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 413 TTGCTGGCCACTTCCCGATCTCTCGTCCTTCAAAGAGAGGTTCGGATTCGACGACTACGA 472
Query 540 GAATCGATTAGATGTGATTGGAATCGACGAAGCTCAATTCTTCGGAGATCTTTACGAGTT 599
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 473 GAATCGATTAGATGTGATTGGAATCGACGAGGCTCAATTCTTCGGAGATCTATACGAGTT 532
Query 600 TTGCCGTGAAGCTGCTGATAAAGAGGGTAAAACTGTAATTGTTGCTGGATTGGATGGTGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 TTGCCGTGAAGCTGCTGATAAAGAGGGTAAAACTGTAATTGTTGCTGGATTGGATGGTGA 592
Query 660 TTTTATGAGGAGGAGGTTTGGTTCGGTTCTTGATTTGATTCCGATTGCGGATACGGTTAC 719
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 593 TTTTAAGCGGAGGAGGTTTGGTTCGGTGCTTGATTTGATTCCGATTGCGGATACGGTTAC 652
Query 720 GAAGCTGACGTCACGGTGTGAGGTTTGTGGGAAGAGAGCTTTGTTTACGATGAGGAAGAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAAGCTGACGTCACGGTGTGAGGTTTGTGGGAAGAGAGCTTTGTTTACGATGAGGAAGAC 712
Query 780 GGAGGAGAAAGAGACGGAGTTGATCGGTGGTGCTGAAGTTTATATGCCTGTGTGTAGGAG 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 713 GGAGGAGAAAGAGACGGAGTTGATCGGTGGAGCTGAAGTTTATATGCCTGTGTGTCGGAG 772
Query 840 TCATTACGTTTGCGGTCAAAACGTTTTGGAAACCGCTCGTGCCGTTTTGGATTC---AAG 896
||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 773 TCATTACGTCTGCGGTCAAAGCGTTTTGGAAACCGCTCGTGCCGTTTTGGATTCTTCAAG 832
Query 897 CAATAATCAT-AGTGTTGTAGCAAGTTCACTTTAGTTTGTA-GGATTTGAGAGT 948
|||||| ||| | |||||||||||||| ||||| | ||| ||| ||||||||
Sbjct 833 CAATAAGCATGA-TGTTGTAGCAAGTTTGCTTTAATGTGTGCGGAGTTGAGAGT 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5