BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23080.1
Length=3123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489162 jgi|Araly1|489162|fgenesh2_kg.6__2296__AT5G23080.1 3803 0.0
> Ahg489162 jgi|Araly1|489162|fgenesh2_kg.6__2296__AT5G23080.1
Length=3047
Score = 3803 bits (2059), Expect = 0.0
Identities = 2259/2354 (96%), Gaps = 20/2354 (1%)
Strand=Plus/Plus
Query 28 TCTCGGTGGTGAAGACAATGGGGTCAGACGAGGAAGATTTCGTGTTTCATGGAACGCCAA 87
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1 TCTCGGTGGTGAAGACAATGGGGTCAGACGAGGAAGATTTCGTGTTTCATGGGACACCAA 60
Query 88 TAGAGCGCGAAGAAGAAATCGCAAGCCGGAAGAAGAAAGCAGTCGCTGGGGCTTCTGGCA 147
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 61 TAGAGCGCGAAGAAGAAATCGCGAGTCGGAAGAAGAAAGCAGTCGCTGGGGCTTCAGGCA 120
Query 148 ATCTTAGAACTCTCCCTGCTTGGAAGCAAGAGGTGACTGATGAAGAAGGCCGTAGAAGGT 207
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 ATCTTAGAACTCTTCCTGCTTGGAAGCAAGAGGTGACTGATGAAGAAGGCCGGAGAAGGT 180
Query 208 TCCATGGAGCATTTACTGGTGGATATTCTGCTGGGTATTACAATACAGTTGGATCAAAAG 267
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TCCATGGAGCATTTACTGGTGGATATTCTGCTGGGTATTACAATACAGTGGGATCAAAAG 240
Query 268 AGGGCTGGGCTCCACAGTCATTTACATCATCAAGGCAGAACAGAGCTGGAGCGAGAAAGC 327
|||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 241 AGGGTTGGGCTCCACAGTCATTTACATCTTCAAGGAAGAACAGAGCTGGAGCGAGAAAGC 300
Query 328 AAAGTATTTCAGACTTTCTAGATGAAGATGAAAAGGCGGATATGGAGGGCAAATCACTGT 387
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 301 AAAGTATTTCAGACTTTCTAGATGAAGATGAAAAGGCTGATATGGAGGGCAAGTCACTTT 360
Query 388 CTGCGAGCTCACAATTTGACACATTTGGGTTTACGGCAGCCGAACATTCCCGCAAGCATG 447
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 361 CTGCGAGCTCACAATTTGATACATTTGGGTTTACGGCAGCTGAACATTCCCGCAAGCAAG 420
Query 448 CTGAGAAAGAACAGCATGAGAGGCCATCAGCCATTCCTGGCCCTGTTCCTGACGAACTTG 507
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 421 CTGAGAAAGAACAGCATGAGAGGCCATCAGCCATTCCTGGCCCAGTTCCTGATGAACTTG 480
Query 508 TTGCTCCAGTTTCAGAGTCAATTGGGGTCAAACTTTTGCTAAAGATGGGATGGCGGCGTG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGCTCCAGTTTCAGAGTCAATTGGGGTCAAACTTTTGCTAAAGATGGGATGGCGGCGTG 540
Query 568 GTCATTCAATAAAGGAAGTGCGTGCCAGTTCAGATGCTCGTAGAGAAGCTAGAAAAGCAT 627
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTCATTCAATAAAGGATGTGCGTGCCAGTTCAGATGCTCGTAGAGAAGCTAGAAAAGCAT 600
Query 628 TCTTAGCCTTCTATACTGATGAGAATACAAAGGAAACGCCCGACTCGCTTGTTTCTGAGA 687
|||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| ||||
Sbjct 601 TCTTAGCCTTCTCTACTGATGAGATTACAAAGGAAACGCCCGACTCACTGGTTTCGGAGA 660
Query 688 CTGAAGTGGAAACTTCTCT--G------G----GTGAAGATATTAAAATTTCTGAAAGCA 735
|||| | |||||||||||| | | |||||||||||||||||||||||||||
Sbjct 661 CTGACGCGGAAACTTCTCTGGGTCCACAGTTTAGTGAAGATATTAAAATTTCTGAAAGCA 720
Query 736 CTCCTGTATATGTTCTGAATCCAAAGCAAGATCTGCATGGATTAGGATATGATCCTTTTA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCCTGTATATGTTCTGAATCCAAAGCAAGATCTGCATGGATTAGGATATGATCCTTTTA 780
Query 796 AGCATGCTCCTGAATTTAGAGAAAAGAAAAGATCTCGCATGTCTGCCAATAAGGAGGTTG 855
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 AGCATGCTCCTGAATTTAGAGAAAAGAAAAGATCTCGCTTGTCTGCCAATAAGGAGGTTG 840
Query 856 GTTTCAGAAAACCTTTATCAATGAAGGAAAGTCTTTTTGGACCCAAATCAGGAAAGATTG 915
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCTTCAGAAAACCTTTATCAATGAAGGAAAGTCTTTTTGGACCCAAATCAGGAAAGATTG 900
Query 916 CTCCGGGTTTTGGCATTGGAGCACTTGAGGAACTTGATGTTGAGGATGAAGATGTCTATG 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTCCGGGTTTTGGCATTGGAGCACTTGAGGAACTTGATGTTGAGGATGAAGATGTCTATG 960
Query 976 CTGGTTACGATTTTGATCAGACTTATGTCATAGAAGACGAACAGCCAGCAAGACAGAGCA 1035
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 961 CTGGTTACGATTTTGATCAGACTTATGTCATAGAAGACGAACAGCCAGCAAGACCGAGCA 1020
Query 1036 ATGACAATAGACTGAGGTTAACCTCAAAAGAGCATGACGTTCTGCCAGGTTTTGGAGCTG 1095
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGACAGTAGACTGAGGTTAACCTCAAAAGAGCATGACGTTCTGCCAGGTTTTGGAGCTG 1080
Query 1096 CTAAGAATTCTGACTACAGTATGGAGAGATTTAATCCTCCGA-TAATCCCGAAGGATTTT 1154
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct 1081 CTAAGAATTCTGACTACAGTATGGAGAGATTTAATCCTCCGAATA-TCCCCAAGGATTTT 1139
Query 1155 GTGGCCCGGCATAAATTTTCTGGTCCTCTTGAGGCTGAAACTAAGCCAACTGTTTCTGCT 1214
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTGCCCGGCATAAATTTTCTGGTCCTCTTGAGGCTGAAACTAAGCCAACTGTTTCTGCT 1199
Query 1215 CCTCCGGAAGTTCCTCCTCCTGCAGATAATAATCTGAAACTTCTGATCGAGGGGTTTGCA 1274
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CCTCCAGAAGTTCCTCCCCCTGCAGATAATAATCTGAAACTTCTGATCGAGGGGTTTGCA 1259
Query 1275 ACTTTTGTTTCCCGTTGCGGGAAACTATACGAGGATCTTTCTAGAGAGAAGAACCAATCA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACTTTTGTTTCCCGTTGCGGGAAACTATACGAGGATCTTTCTAGAGAGAAGAACCAATCA 1319
Query 1335 AATCAGCTGTTTGATTTTCTTCGGGAAGGTAACGGTCATGACTACTAC-GCAAGAAGGCT 1393
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1320 AATCAGCTGTTTGATTTTCTTCGGGAAGGTAACGGTCATGACTACTACAG-AAGAAGGCT 1378
Query 1394 GTGGGAGGAGCAGCAAAAGCGTAAAGATCAAAGTAAGCTGACATTAGATGTTAAGGTGTC 1453
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 GTGGGAGGAGCAGCAAAAGCGCAAAGATCAAAGTAAGCTGACATTAGATGTTAAGCTGTC 1438
Query 1454 TCCAACCGTACAGAAAATGACTGCAGAAACACGTGGCAGCTTATTAGGGGAAAAGCCA-T 1512
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1439 TCCAACCGTTCAGAAAATGACTGCAGAAACCCGTGGCAGCTTATTAGGGGAAAAGCCACT 1498
Query 1513 TGCAGAGAAGTTTGAAAGAAACCGATACTTCTGCTTCTTCTGGAGGCTCCTTCCAGTTCC 1572
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1499 T-CAGAGAAGTTTGAAAGAAACCGATACTCCTGCTTCTTCTGGAGGCTCCTTCCAGTTCC 1557
Query 1573 CGACCAATCTCTCTGACACATTCACCAAATCAGCTTCATCTCAAGAGGCAGCAGATGCTG 1632
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CGACCAATCTTTCTGACACATTCACCAAATCAGCTTCATCTCAAGAGGCAGCAGATGCTG 1617
Query 1633 TGAAGCCCTTCAAAGATGATCCAGCTAAACAAGAAAGATTTGAGCAGTTTCTCAAGGAGA 1692
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1618 TTAAGCCCTTCAAAGATGATCCGGCTAAACAAGAAAGATTTGAGCAGTTTCTCAAGGAGA 1677
Query 1693 AATACAAAGGAGGGTTACGTACAACAGACTCCAACAGAGTTAATAGCATGTCGGAATCAG 1752
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1678 AATACAAAGGAGGGTTACGTACAACAGACTCCAACAGAGTTAACAGCATGTCGGAATCAG 1737
Query 1753 CTCGGGCACAAGAGAGGCTGGACTTTGAGGCTGCAGCCGAGGCAATTGAGAAAGGGAAAG 1812
|||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1738 CTCGTGCTCAAGAGAGGTTGGACTTTGAGGCTGCAGCTGAGGCAATTGAGAAAGGGAAAG 1797
Query 1813 CTTACAAGGAGGTCAGACGGGCTACCGAACAGCCTCTCGATTTCCTTGCTGGAGGTCTTC 1872
||||||||||||||||||||||||| ||||||||| |||| |||||||| ||||| || |
Sbjct 1798 CTTACAAGGAGGTCAGACGGGCTACTGAACAGCCTATCGACTTCCTTGCAGGAGGGCTGC 1857
Query 1873 AGTTTACTTCTGGGGGAACAGAGCAAATTAAAGACACTGGAGTGGTAGACATGAAATCGA 1932
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1858 AGTTTACTTCTGGCGGAACAGAGCAAATTAAAGACACTGGCGTGGTAGACATGAAATCGA 1917
Query 1933 GTAAGACGTATCCTAAAAGGGAAGAGTTCCAATGGCGTCCTTCACCTCTTTTGTGCAAAC 1992
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1918 GTAAGACGTATCCTAAAAGGGAAGAGTTCCAATGGCGTCCTTCACCTCTTTTGTGCAAGC 1977
Query 1993 GTTTTGATCTCCCCGATCCATTCATGGGAAAGCTGCCACCTGCTCCGCGAGCGAGAAACA 2052
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GTTTTGATCTCCCTGATCCGTTCATGGGAAAGCTGCCACCTGCTCCGCGAGCGAGAAACA 2037
Query 2053 AAATGGATTCTCTCGTATTCTTGCCGGATACAGTGAAAGCTGCATCTGCACGTCAAGTAT 2112
|||||||||||||| |||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 2038 AAATGGATTCTCTCATATTCTTGCCAGATACAGTGAAAGCTGCATGTACACGTCAAGTAT 2097
Query 2113 CTGAGTCGCAAGTACCTAAGAAAGAGACATCAATAGAAGAGCCTGAAGTTGAGGTAGAAG 2172
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 CTGAGTCGCAAGAACCTAAGAAAGAGACATCAATAGAAGAGCCTGAAGTTGAGGTAGAAG 2157
Query 2173 TGGAGAATGTGGAGAGACCTGTTGATCTTTACAAGGCTATCTTCTCTGATGATTCTGAAG 2232
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 2158 TGGAGAATGTGGAGAGGCCTGTTGATCTTTATAAGGCCATCTTCTCTGATGATTCTGAAG 2217
Query 2233 ATGATGAAGATCAACCAATGAATGGAAAGATACAAGAGGGTCAAGAAAAGAAGAATGAAG 2292
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 ATGATGAAGATCAACCAATAAATGGAAAGATACAAGAGGGTCAAGAAAAGAAGAATGAAG 2277
Query 2293 CGGCTGCAACCACATTAAACCGGCTTATAGCTGGCGA-TTTCCTAGAATCTTTAGGGAAA 2351
|||||||||||||||||||||| || ||||| || || |||| | ||||| ||||||||
Sbjct 2278 CGGCTGCAACCACATTAAACCGTCTAATAGCGGGTGACTTTCTT-GAATCACTAGGGAAA 2336
Query 2352 GAACTAGGGTTCGA 2365
||||||||||||||
Sbjct 2337 GAACTAGGGTTCGA 2350
Score = 929 bits (503), Expect = 0.0
Identities = 615/668 (92%), Gaps = 12/668 (2%)
Strand=Plus/Plus
Query 2369 GCCAATGGAAGAAGAGATCAAGTCCAGAAGCAAACCCGAAGATTCTTCTGATAAAAGACT 2428
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2387 GCCAATGGAAGAAGAGAGCAAGTCCAGAAGCAAACCCGAAGACTCTTCTGATAAAAGACT 2446
Query 2429 TGATCGACCCGGATTGAAAGAGAAAGTGGAGGAGAAGACAAGCAGCCTCACACTTGGGTC 2488
||||||| | ||| |||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2447 TGATCGATCGGGAATGAAAGAGAAAGTGGAGGAGAAGAGAAGCAGCCTCATACTTGGGTC 2506
Query 2489 TgaagaagaaaagagtagaaaaaagagagagaaaTCGCCAGGAAAACGG-AGTGGTGGCA 2547
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 2507 TGAAGAAGAAAAGAGTAGAAAAAAGAGAGAGAAATCGCCAAGAAAA-GGAAGTGGTGGCA 2565
Query 2548 ACGATCTATCATCGAGTGAATCCTCAGGAGATGAACGGAGGAGAAAACGATATAATAAGA 2607
|| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2566 ACAATCTATCATCGGGTGAATCCTCAGGAGATGAACGGAGGAGAAAACGATCTAATAAGA 2625
Query 2608 AGGATAGACATAGAAACGATTCAGAGAGCGATTCATCCAGCGACTACCACAGCAGGGATA 2667
||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2626 AGGATAGAC---CCATTGATTCAGAGAGCGATTCATCCAGCGACTACCACAGCAGGGATA 2682
Query 2668 AGCAAGGATCAAGATCTAGGAGCAAGCGGAGAGAATCTTCTAGAGAGAAGAGAAGTAGCC 2727
||||||| |||||||| || || ||||| |||||||||||||||||||||||||||||||
Sbjct 2683 AGCAAGGTTCAAGATCAAGAAGAAAGCGAAGAGAATCTTCTAGAGAGAAGAGAAGTAGCC 2742
Query 2728 ACAAGAAGCACTCAAAGCATCGCAGGACCAAGAAGTCTTCTTCTTCACGGTATAGCTCAG 2787
||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||
Sbjct 2743 ACAAGAAGCACTCAAAGCATCACAAGACCAAGAAGTCATCTTCTTCTCGGTATAGCTCAG 2802
Query 2788 ACGAAGAACAAAAAGAGTCAAGGCGGGAGAAGAAGAGGCGACGAGACTGAAACTTAATCA 2847
|||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 2803 ACGAAGAACAAAAAGAATCAAGGCGAGAGAAGAAGAGGCGACGAGACTGAAACCTAATCA 2862
Query 2848 AAGCTGTTGACTGACTAAAACT-GGAGAGAAATCAGAGCACTTGCATAGATTTTTGTGTG 2906
|||||||||||||| |||| || || |||| ||||||||| |||||||||||||||| ||
Sbjct 2863 AAGCTGTTGACTGATTAAA-CTCGG-GAGATATCAGAGCAGTTGCATAGATTTTTGTATG 2920
Query 2907 AACATTGAAATAACGTAGTTTTGGGGTATGCCATGAATGATGCTCTGCACTGTCTCGAGA 2966
|||| ||||| | |||||||| | ||||||| ||||||||| ||||||||||||||||||
Sbjct 2921 AACACTGAAACAGCGTAGTTTCGAGGTATGCAATGAATGATTCTCTGCACTGTCTCGAGA 2980
Query 2967 TGGTCA--GGTTAGATAGCAAATGATGAGCTTGTTGTTGGGTTCATTG-CTTCGTCTGAG 3023
||| || |||||||||||||||||||||||||||||||||||||||| || | | ||||
Sbjct 2981 TGGACACAGGTTAGATAGCAAATGATGAGCTTGTTGTTGGGTTCATTGTCTCC-TATGAG 3039
Query 3024 GTAGAGAG 3031
||||||||
Sbjct 3040 GTAGAGAG 3047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117965488765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5