BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23090.2
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489163 jgi|Araly1|489163|fgenesh2_kg.6__2297__AT5G23090.2 1411 0.0
> Ahg489163 jgi|Araly1|489163|fgenesh2_kg.6__2297__AT5G23090.2
Length=992
Score = 1411 bits (764), Expect = 0.0
Identities = 879/933 (94%), Gaps = 13/933 (1%)
Strand=Plus/Plus
Query 1 TCTTCACGCGCCGTCTCTAAGC-GTTGTAAAAGAAAGTGTGATTCACGCGC-TTTGCTTC 58
||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| ||
Sbjct 1 TCTTCACGCGCCGTCTCCAAGCTGTTGTAAAAGAAAGTGGGATTCACGCGCTTTTGCGTC 60
Query 59 TTCCGTTTGCCCTAAACGACTCTGCTAGAGAAGACGAAGGAGAGAGAAAATCCCTCCGAT 118
|||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 61 TTCCGTTTGCCCTAGTCGACTCTGCTAGAGAACACGAAGGAGAGAGAAAGTTCCTCCGAT 120
Query 119 TATATTCCGTACAATCCGATCGATTTCCCGGCGCCAGATCTCACCGCGACTCGTC-TACT 177
| |||||||||||||||||||| |||||||| |||||||||||||||||||||| | |
Sbjct 121 AAGATTCCGTACAATCCGATCGACTTCCCGGCACCAGATCTCACCGCGACTCGTCGGA-T 179
Query 178 -TTCCGATTTGGTTCGTGTTGACTCAGTTACGATTAAACTATGGATCCAATGGATATAGT 236
|| | |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CTT-CTCTTTGAACCGTGTTGACTCAGTTACGATTAAACAATGGATCCAATGGATATAGT 238
Query 237 CGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAGCTACGATGACTAAAATTATAAAGGA 296
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 239 CGGCAAATCCAAGGAAGACGCTTCTCTTCCAAAAGCGACGATGACTAAGATTATAAAGGA 298
Query 297 GATGTTACCACCAGATGTTCGTGTTGCAAGAGATGCTCAAGATCTTCTCATTGAATGTTG 356
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 299 GATGTTACCACCAGATGTTCGTGTTGCTAGAGATGCTCAAGATCTTCTAATTGAATGTTG 358
Query 357 TGTAGAGTTTATAAATCTTGTATCTTCAGAATCTAATGATGTTTGTAACAAAGAGGATAA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGTAGAGTTTATAAATCTTGTATCTTCAGAATCTAATGATGTTTGTAACAAAGAGGATAA 418
Query 417 ACGGACGATTGCTCCTGAGCATGTTCTCAAGGCATTACAGGTTCTTGGTTTTGGAGAATA 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGGACGATTGCTCCTGAGCATGTTCTCAAGGCATTACAGGTTCTTGGTTTTGGAGAATA 478
Query 477 CATTGAAGAAGTCTATGCTGCGTATGAGCAACATAAGTATGAAACAATGCAGGACACACA 536
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 CATTGAAGAAGTTTATGCTGCGTATGAGCAACATAAGTATGAAACTATGCAGGACACACA 538
Query 537 GAGGAGCGTGAAATGGAACCCTGGAGCTCAAATGACTGAGGAGGAAGCAGCAGCTGAGCA 596
||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 539 GAGAAGCGTGAAATGGAATAGTGGAGCTCAAATGACTGAAGAGGAAGCAGCAGCTGAGCA 598
Query 597 ACAACGTATGTTTGCAGAAGCACGTGCAAGAATGAATGGAGGTGTTTCGGTTCCTCAACC 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 ACAACGTATGTTTGCAGAAGCACGTGCAAGAATGAATGGAGGTGTTTCCGTTCCTCAACC 658
Query 657 TGAACATCCAGAAACTGACCAGAGAAGTCCGCAAAGCTAACTGAAACCGTAAGGGTAAGT 716
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAACATCCAGAAACCGACCAGAGAAGTCCGCAAAGCTAACTGAAACCGTAAGGGTAAGA 718
Query 717 GTTAGGCAAGAAAAAACAACATCCTTTTAACATTCCCTTGTAAGTTGCAAATGCGTATGT 776
||||||||||||| || |||||||||||||||||||||||||||| ||| |||||| |||
Sbjct 719 GTTAGGCAAGAAAGAA-AACATCCTTTTAACATTCCCTTGTAAGT-GCAGATGCGTCTGT 776
Query 777 TCTCTGTTTATATGCTCTTAGTATGATATATGTTAGTTAGTGTTTCACGATCTAAAAACA 836
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 777 CCTCTGTTTATATGCTCTTAGTATGATATATGTTAGTTAGTGTTTCATGATCTAAAAACA 836
Query 837 CTTGTGATTCAGATGTAATTAGTAAGCATTCCTTGTTTTGTGTTTACTTGTGTCTT---G 893
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 837 CTTGTGATTCAGATGTAATTAGTAAGCATTCCTTGTTTGGTGTT-ACTTGTGTCTTCTTG 895
Query 894 ACTAAGCATGGTGGGTCAGGTCTACAC-AAAGC 925
|||||||| |||| ||||||||||||| |||||
Sbjct 896 ACTAAGCACGGTGTGTCAGGTCTACACCAAAGC 928
Score = 97.1 bits (52), Expect = 2e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 968 GGATAAATTTGGTGATTGGTGTAATTGTTTTTCCATAAACACAATGCAATCATTGTTTAG 1027
|||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct 929 GGATAAATTTGGTGATTGGTGTAATTGTCTTTCCATACACACAATGCGGTCATTGTTTAG 988
Query 1028 TGTT 1031
||||
Sbjct 989 TGTT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38580392004
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5