BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23130.1 Length=1741 Score E Sequences producing significant alignments: (Bits) Value Ahg489170 jgi|Araly1|489170|fgenesh2_kg.6__2304__AT5G23130.1 1733 0.0 > Ahg489170 jgi|Araly1|489170|fgenesh2_kg.6__2304__AT5G23130.1 Length=1604 Score = 1733 bits (938), Expect = 0.0 Identities = 1353/1542 (88%), Gaps = 74/1542 (5%) Strand=Plus/Plus Query 114 AAAATTTCCTTCCATTTCACTCCACGAGTTTTCACCTCTCTTGTTCAATCTCTCAACGTC 173 |||| ||| |||| || |||||||| |||||||||||||||| |||||||||||| |||| Sbjct 75 AAAAATTCGTTCCCTTCCACTCCACCAGTTTTCACCTCTCTTCTTCAATCTCTCATCGTC 134 Query 174 TCTCCCTCGTTTCTCGTTTTCGCTTTTTCCCCTTTTCCTCTTCTATTTTACCGGAATCCG 233 ||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| Sbjct 135 TCTTCCTCGTTTCTCGTTTTCGCTTTTTCCCC-TTTCCTCTTCGATTTTACTGGAATCCG 193 Query 234 AGAATTTTTGATCAGATCTAGTTTCAGAAATAGGTTAGTTCCAACAATG-TTGACGGAAC 292 |||||||||||||||||||||||||||||||||||||| ||| || || || | Sbjct 194 AGAATTTTTGATCAGATCTAGTTTCAGAAATAGGTTAG--------ATGCTT-ACTGATC 244 Query 293 GAGGAAGGCGAATTTCTGGTTTCAATGGGAGTTTCGAATTTAGCAATAGAAAATTCCGTG 352 |||| || | |||||||||| ||||| |||||| ||| || | | | ||| || Sbjct 245 GAGGGAGAAGGATTTCTGGTTGCAATGTGAGTTTTGAA-TT--CCGT-GGTGATT--ATG 298 Query 353 GTTATGGATTCGTAGATCGATCTCAAGGTTTCCATGAAAGGAGTCCTTCAAGATCA-TGT 411 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 299 GTTACGGATTCGTAGATCGATCTCAAGGTTGCCATGAAAGGAGTCCTTCAAGATCATTG- 357 Query 412 TCTGTTTCGAAAATCCTTCGTATCACGCCACCAACCTCGTCTCCACCGTCTTCGGCTTCT 471 |||||||||||||||||||||||||| |||| |||| |||||||||||| ||| ||||| Sbjct 358 TCTGTTTCGAAAATCCTTCGTATCACATCACCGACCTTGTCTCCACCGTCGTCGACTTCT 417 Query 472 ACATGCGCTGGTTATATCGAACACCGGGTCTCCAAGTTCGATACTCTCGCCGGCATTGCC 531 || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 418 ACCGGCGCTGGTTATATCGAACACCGGGTTTCCAAGTTCGATACTCTCGCCGGCATTGCC 477 Query 532 ATTAAGTATGGCGTTGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTAACTGATCTT 591 || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 478 ATAAAGTATGGCGTGGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTTACTGATCTT 537 Query 592 CAGATGTTTGCTCTTGAGTCTCTCCGAATACCATTACCTGGAAGACATCCTCCTTCCCCA 651 ||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| || Sbjct 538 CAGATGTTTGCTCTTAAGTCTCTCCGGATACCATTACGTGGAAGACATCCTCCTTCTCCT 597 Query 652 TGCTTATCTAATGGCTCTCTAAATCATGGAGAGGATTGGTCCGAGCAAGCTTCATCCTCA 711 ||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 598 TGCTTATCTAACGGCTCCCTAAATCATGGAGAGGATTGTTCCGAGCAAGCTTCATCATCG 657 Query 712 GCTAGCAATGGCAACCACCAGGACGTATTTGACTCCTTCCAGTCTTTGAGGTTGAA-CCA 770 || ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| || Sbjct 658 GCAAGCAATGGCAACCACCAAGACGTATTTGACTCCTTTCAGTCTTTGAGGCTGAAGCC- 716 Query 771 TTCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAACC 830 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TCCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAACC 776 Query 831 AAAAAACAGAAGAGCTTCTGAAGGTTTTGGGATGGCAGTCTACAAGAACGAAGCTTCTCA 890 ||||| |||||||||||| ||| |||||| ||||||||||| ||||||| |||||||||| Sbjct 777 AAAAACCAGAAGAGCTTCCGAAAGTTTTGAGATGGCAGTCTGCAAGAACAAAGCTTCTCA 836 Query 891 ACTCCAAGACAATGATCAGTATCTCACTCCCTTCCCCGCCACCAGTACTCCCTTATCCCA 950 |||||| || ||| |||||| |||||||||||||| ||||||| |||||||||| ||| Sbjct 837 TCTCCAACACGATGGTCAGTACCTCACTCCCTTCCCAGCCACCAATACTCCCTTAAGCCA 896 Query 951 CCACAGAAAATCAAGAAGCTTGGTAGATGCAGTTATCGCCGAGGTTAACCAATCACCCAA 1010 |||||||||||||||||| ||||| ||||||||| |||| ||||| |||||||||||||| Sbjct 897 CCACAGAAAATCAAGAAGTTTGGTCGATGCAGTTGTCGCTGAGGTCAACCAATCACCCAA 956 Query 1011 CCCTTCAAAAGCAGGAGGAGGAGAAGTGAACTCTACTGATAAGCCAATGAGAAGACGCCA 1070 |||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||| Sbjct 957 CCCTTCAAAAGCAGGAGGAGGAGAAGTGAA-T-T-CTGACAAGCCAATGAGAAGACGCCA 1013 Query 1071 AAAATCTGAAGCCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACAG 1130 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 AAAATCTGAAACCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACAG 1073 Query 1131 AAGCAGCAGTGGCGCGTTTTCTGCAATAGCTGGAAAAAATTTAGCACTGAGATCCAAAGC 1190 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1074 AAGCAGCAATGGCGCGTTTTCTGCAATAGCTGGGAAAAATTTAGCACTGAGATCCAAAGC 1133 Query 1191 ATCAAGCAGAGCTAAC-TTATCAGCAGAAACC-AGAC----A-TCTCAATTCCATACCAA 1243 | || |||||||||| || ||| |||| || ||| | | ||||||||||||||| Sbjct 1134 AGCAGGCAGAGCTAATGTT-TCAACAGATACTGAGAATGGTAATGTCAATTCCATACCAA 1192 Query 1244 TCAATTTGATGGATGCTCCTGTGGGAG----A--CAGCTTCTCAAGCGTGAGGAAATCTG 1297 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||| | Sbjct 1193 TCAGTTTGATGGATGCTCCTGTGGGAGTGGGAGACAGCTTCTCAAGCGTGAGGAAATC-G 1251 Query 1298 TT-AGCGCATCTAGTCTACAAGAACCAAACTGTAACAGCAACGGTTCATCGCTATGGCCA 1356 || |||||||||||||| |||||| | | |||| |||||||||||||||||||||| || Sbjct 1252 TTTAGCGCATCTAGTCTGCAAGAATCGGATTGTACCAGCAACGGTTCATCGCTATGGTCA 1311 Query 1357 ACCTCAAAGTGGACCCTGAAACCTGAGTTACTCACACAAGTAGCCATGGCTAGTTCTATT 1416 ||||| |||||||||||||||||||| || |||||||| | ||||||||| ||||||||| Sbjct 1312 ACCTCGAAGTGGACCCTGAAACCTGATTTGCTCACACAGGCAGCCATGGCGAGTTCTATT 1371 Query 1417 TTTGACGGATTGCCTAAGCCATTAACTGGTCGGAGAAACAAAAAGGCTGTGGACTAAGGT 1476 |||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| Sbjct 1372 TTTGACGGATTGCCTAAGCCTTTAACAGGTCGGAGAAACAAAAAAGCTGTGGACTAAGG- 1430 Query 1477 TAGTTAGGTACTTAGGTTCCGTCGGTCTCGTTATCGACTGTCCACTTTTGGTTTTTGTAA 1536 | | |||| | || || | | ||| || | | || ||||| | || Sbjct 1431 -ACTAAGGT--T-AG-TTA-G--G-TCT--TT-T-G---GT----TTTTG-T------AA 1463 Query 1537 TCCAAAAGCAAGAAGTCAATGGCTTTTATAATAGATTGAGGAGTAAATAGAAAGTAAAAA 1596 |||| ||||||||| || |||||| || ||||||| ||||||||||||| ||||||| Sbjct 1464 TCCATAAGCAAGAACTCGATGGCT---AT--TAGATTGGGGAGTAAATAGAA-GTAAAAA 1517 Query 1597 GTGTATTGCTGCATTTCATTCATTCAAAACAATAAGGCAAAA 1638 ||||||| ||||||||||| ||| ||||||||||| ||||| Sbjct 1518 GTGTATTATTGCATTTCATTTATTAAAAACAATAAGTCAAAA 1559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65324770175 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5