BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23130.1
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489170 jgi|Araly1|489170|fgenesh2_kg.6__2304__AT5G23130.1 1733 0.0
> Ahg489170 jgi|Araly1|489170|fgenesh2_kg.6__2304__AT5G23130.1
Length=1604
Score = 1733 bits (938), Expect = 0.0
Identities = 1353/1542 (88%), Gaps = 74/1542 (5%)
Strand=Plus/Plus
Query 114 AAAATTTCCTTCCATTTCACTCCACGAGTTTTCACCTCTCTTGTTCAATCTCTCAACGTC 173
|||| ||| |||| || |||||||| |||||||||||||||| |||||||||||| ||||
Sbjct 75 AAAAATTCGTTCCCTTCCACTCCACCAGTTTTCACCTCTCTTCTTCAATCTCTCATCGTC 134
Query 174 TCTCCCTCGTTTCTCGTTTTCGCTTTTTCCCCTTTTCCTCTTCTATTTTACCGGAATCCG 233
||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 135 TCTTCCTCGTTTCTCGTTTTCGCTTTTTCCCC-TTTCCTCTTCGATTTTACTGGAATCCG 193
Query 234 AGAATTTTTGATCAGATCTAGTTTCAGAAATAGGTTAGTTCCAACAATG-TTGACGGAAC 292
|||||||||||||||||||||||||||||||||||||| ||| || || || |
Sbjct 194 AGAATTTTTGATCAGATCTAGTTTCAGAAATAGGTTAG--------ATGCTT-ACTGATC 244
Query 293 GAGGAAGGCGAATTTCTGGTTTCAATGGGAGTTTCGAATTTAGCAATAGAAAATTCCGTG 352
|||| || | |||||||||| ||||| |||||| ||| || | | | ||| ||
Sbjct 245 GAGGGAGAAGGATTTCTGGTTGCAATGTGAGTTTTGAA-TT--CCGT-GGTGATT--ATG 298
Query 353 GTTATGGATTCGTAGATCGATCTCAAGGTTTCCATGAAAGGAGTCCTTCAAGATCA-TGT 411
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 299 GTTACGGATTCGTAGATCGATCTCAAGGTTGCCATGAAAGGAGTCCTTCAAGATCATTG- 357
Query 412 TCTGTTTCGAAAATCCTTCGTATCACGCCACCAACCTCGTCTCCACCGTCTTCGGCTTCT 471
|||||||||||||||||||||||||| |||| |||| |||||||||||| ||| |||||
Sbjct 358 TCTGTTTCGAAAATCCTTCGTATCACATCACCGACCTTGTCTCCACCGTCGTCGACTTCT 417
Query 472 ACATGCGCTGGTTATATCGAACACCGGGTCTCCAAGTTCGATACTCTCGCCGGCATTGCC 531
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 ACCGGCGCTGGTTATATCGAACACCGGGTTTCCAAGTTCGATACTCTCGCCGGCATTGCC 477
Query 532 ATTAAGTATGGCGTTGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTAACTGATCTT 591
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 ATAAAGTATGGCGTGGAGGTTGCAGATATCACGAAGCTGAATGGGCTTGTTACTGATCTT 537
Query 592 CAGATGTTTGCTCTTGAGTCTCTCCGAATACCATTACCTGGAAGACATCCTCCTTCCCCA 651
||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||
Sbjct 538 CAGATGTTTGCTCTTAAGTCTCTCCGGATACCATTACGTGGAAGACATCCTCCTTCTCCT 597
Query 652 TGCTTATCTAATGGCTCTCTAAATCATGGAGAGGATTGGTCCGAGCAAGCTTCATCCTCA 711
||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 598 TGCTTATCTAACGGCTCCCTAAATCATGGAGAGGATTGTTCCGAGCAAGCTTCATCATCG 657
Query 712 GCTAGCAATGGCAACCACCAGGACGTATTTGACTCCTTCCAGTCTTTGAGGTTGAA-CCA 770
|| ||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||
Sbjct 658 GCAAGCAATGGCAACCACCAAGACGTATTTGACTCCTTTCAGTCTTTGAGGCTGAAGCC- 716
Query 771 TTCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAACC 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TCCAGAAAAGAAGATTTCTCCAGCCATGAACTCCTTGCAAGGTTATTATGGACTGAAACC 776
Query 831 AAAAAACAGAAGAGCTTCTGAAGGTTTTGGGATGGCAGTCTACAAGAACGAAGCTTCTCA 890
||||| |||||||||||| ||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct 777 AAAAACCAGAAGAGCTTCCGAAAGTTTTGAGATGGCAGTCTGCAAGAACAAAGCTTCTCA 836
Query 891 ACTCCAAGACAATGATCAGTATCTCACTCCCTTCCCCGCCACCAGTACTCCCTTATCCCA 950
|||||| || ||| |||||| |||||||||||||| ||||||| |||||||||| |||
Sbjct 837 TCTCCAACACGATGGTCAGTACCTCACTCCCTTCCCAGCCACCAATACTCCCTTAAGCCA 896
Query 951 CCACAGAAAATCAAGAAGCTTGGTAGATGCAGTTATCGCCGAGGTTAACCAATCACCCAA 1010
|||||||||||||||||| ||||| ||||||||| |||| ||||| ||||||||||||||
Sbjct 897 CCACAGAAAATCAAGAAGTTTGGTCGATGCAGTTGTCGCTGAGGTCAACCAATCACCCAA 956
Query 1011 CCCTTCAAAAGCAGGAGGAGGAGAAGTGAACTCTACTGATAAGCCAATGAGAAGACGCCA 1070
|||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||
Sbjct 957 CCCTTCAAAAGCAGGAGGAGGAGAAGTGAA-T-T-CTGACAAGCCAATGAGAAGACGCCA 1013
Query 1071 AAAATCTGAAGCCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACAG 1130
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAAATCTGAAACCGATTTTAGTTCACGAGCTCCAGAATTGCTGTTGAAGGAAGAGAACAG 1073
Query 1131 AAGCAGCAGTGGCGCGTTTTCTGCAATAGCTGGAAAAAATTTAGCACTGAGATCCAAAGC 1190
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1074 AAGCAGCAATGGCGCGTTTTCTGCAATAGCTGGGAAAAATTTAGCACTGAGATCCAAAGC 1133
Query 1191 ATCAAGCAGAGCTAAC-TTATCAGCAGAAACC-AGAC----A-TCTCAATTCCATACCAA 1243
| || |||||||||| || ||| |||| || ||| | | |||||||||||||||
Sbjct 1134 AGCAGGCAGAGCTAATGTT-TCAACAGATACTGAGAATGGTAATGTCAATTCCATACCAA 1192
Query 1244 TCAATTTGATGGATGCTCCTGTGGGAG----A--CAGCTTCTCAAGCGTGAGGAAATCTG 1297
||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
Sbjct 1193 TCAGTTTGATGGATGCTCCTGTGGGAGTGGGAGACAGCTTCTCAAGCGTGAGGAAATC-G 1251
Query 1298 TT-AGCGCATCTAGTCTACAAGAACCAAACTGTAACAGCAACGGTTCATCGCTATGGCCA 1356
|| |||||||||||||| |||||| | | |||| |||||||||||||||||||||| ||
Sbjct 1252 TTTAGCGCATCTAGTCTGCAAGAATCGGATTGTACCAGCAACGGTTCATCGCTATGGTCA 1311
Query 1357 ACCTCAAAGTGGACCCTGAAACCTGAGTTACTCACACAAGTAGCCATGGCTAGTTCTATT 1416
||||| |||||||||||||||||||| || |||||||| | ||||||||| |||||||||
Sbjct 1312 ACCTCGAAGTGGACCCTGAAACCTGATTTGCTCACACAGGCAGCCATGGCGAGTTCTATT 1371
Query 1417 TTTGACGGATTGCCTAAGCCATTAACTGGTCGGAGAAACAAAAAGGCTGTGGACTAAGGT 1476
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1372 TTTGACGGATTGCCTAAGCCTTTAACAGGTCGGAGAAACAAAAAAGCTGTGGACTAAGG- 1430
Query 1477 TAGTTAGGTACTTAGGTTCCGTCGGTCTCGTTATCGACTGTCCACTTTTGGTTTTTGTAA 1536
| | |||| | || || | | ||| || | | || ||||| | ||
Sbjct 1431 -ACTAAGGT--T-AG-TTA-G--G-TCT--TT-T-G---GT----TTTTG-T------AA 1463
Query 1537 TCCAAAAGCAAGAAGTCAATGGCTTTTATAATAGATTGAGGAGTAAATAGAAAGTAAAAA 1596
|||| ||||||||| || |||||| || ||||||| ||||||||||||| |||||||
Sbjct 1464 TCCATAAGCAAGAACTCGATGGCT---AT--TAGATTGGGGAGTAAATAGAA-GTAAAAA 1517
Query 1597 GTGTATTGCTGCATTTCATTCATTCAAAACAATAAGGCAAAA 1638
||||||| ||||||||||| ||| ||||||||||| |||||
Sbjct 1518 GTGTATTATTGCATTTCATTTATTAAAAACAATAAGTCAAAA 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65324770175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5