BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23140.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941835 jgi|Araly1|941835|scaffold_602379.1 1214 0.0
> Ahg941835 jgi|Araly1|941835|scaffold_602379.1
Length=754
Score = 1214 bits (657), Expect = 0.0
Identities = 731/765 (96%), Gaps = 12/765 (2%)
Strand=Plus/Plus
Query 55 AGAACAACCCTAGATTCCGATGATGAGGGGTCTCGTTTCCGGCGCCAAGATGCTATCATC 114
||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 2 AGAACAACCCTAGATTCCGATGATGAGGGGTCTTGTTTCCGGTGCCAAGAGGCTATCAT- 60
Query 115 AACCCCATCGTCGATGGCGACAAGCATCGCCACTGGTAGAAGAAGCTACAGTCTGATTCC 174
||||| ||| | || ||||||||||||| ||||||||||||||||||||||||
Sbjct 61 --CCCCA---TCG-T--CG---AGCATCGCCACTGCTAGAAGAAGCTACAGTCTGATTCC 109
Query 175 GATGGTTATTGAGCACTCATCGCGAGGAGAGAGAGCTTACGACATCTTCTCTCGTTTGCT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 GATGGTTATTGAGCACTCATCGCGAGGAGAGAGAGCTTACGACATCTTCTCTCGTTTGCT 169
Query 235 CAAGGAGCGTATTATCTGCATCAACGGTCCCATTAATGACGACACATCTCACGTCGTCGT 294
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 170 CAAGGAGCGTATTATCTGCATCAACGGTCCCATTAATGACGATACGTCTCACGTCGTCGT 229
Query 295 CGCTCAGCTTCTTTACCTCGAGTCTGAGAATCCTTCGAAGCCGATCCATATGTATCTCAA 354
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 230 CGCTCAGCTTCTTTACCTCGAGTCTGAGAATCCTTCCAAGCCGATCCATATGTATCTCAA 289
Query 355 TTCCCCTGGCGGCCATGTCACCGCCGGTCTTGCAATTTATGATACTATGCAGTACATTCG 414
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTCACCTGGCGGCCATGTCACCGCCGGTCTTGCAATTTATGATACTATGCAGTACATTCG 349
Query 415 TTCTCCTATTAGCACAATTTGTTTGGGTCAGGCTGCATCAATGGCTTCTCTTCTGTTGGC 474
||||| || |||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 350 CTCTCCGATAAGCACAATTTGTTTAGGTCAGGCTGCATCAATGGCTTCTCTGCTCTTGGC 409
Query 475 AGCGGGTGCCAAGGGGCAAAGGCGGTCACTTCCAAATGCAACTGTTATGATTCATCAGCC 534
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 410 AGCGGGTGCCAAGGGGCAAAGGCGGTCGCTTCCAAATGCAACTGTTATGATTCATCAGCC 469
Query 535 TTCAGGAGGATATAGTGGACAGGCTAAAGATATAACGATTCATACAAAACAGATTGTTCG 594
||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 470 TTCGGGAGGATATAGCGGACAGGCTAAGGATATAACGATTCATACAAAACAGATTGTTCG 529
Query 595 TGTGTGGGATGCGTTAAATGAATTGTATGTCAAACACACGGGTCAACCTCTTGACGTGGT 654
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 530 TGTGTGGGATGCGTTAAATGAACTGTATGTCAAACATACGGGTCAACCTCTTGACGTGGT 589
Query 655 TGCGAATAACATGGATAGGGATCATTTCATGACTCCTGAAGAGGCTAAGGCGTTTGGAAT 714
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TGCTAATAACATGGATAGGGATCATTTCATGACTCCTGAAGAGGCTAAGGCGTTTGGAAT 649
Query 715 AATCGATGAAGTGATTGATGAAAGACCGTTGGAGTTGGTGAAAGATGCAGTTGGAAATGA 774
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AATCGATGAAGTAATTGATGAAAGACCGTTGGAGTTGGTGAAAGATGCAGTTGGAAATGA 709
Query 775 AAGCAAAGATAAGAGTTCAAGTTAGGAAGTAACTGGTAATCAAAG 819
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 AAGCAAAGATAAGAGTTCAAGTTAGGAAGTAACTGGTAATCAAAG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5