BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23150.1
Length=4926
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489171 jgi|Araly1|489171|fgenesh2_kg.6__2305__AT5G23150.1 7239 0.0
Ahg487657 jgi|Araly1|487657|fgenesh2_kg.6__791__AT5G08230.1 837 0.0
> Ahg489171 jgi|Araly1|489171|fgenesh2_kg.6__2305__AT5G23150.1
Length=4889
Score = 7239 bits (3920), Expect = 0.0
Identities = 4605/4925 (94%), Gaps = 89/4925 (2%)
Strand=Plus/Plus
Query 53 CTTTCAGCCCTAACCCCATCGtctctc--t--ctcgcgaccgcctcatctctctctgtct 108
||||| ||||||| ||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 1 CTTTCTGCCCTAAGCCCATCGTCTCTCTATCCCTCGCGACCGCCTCACCTCTCTCTGTCT 60
Query 109 ggatcaatctcgctctctctttctctcGGCTACGTCGCTGTTTCTCGTTTCGTGATCCGT 168
|||||||||||||||| | | |||||| ||| |||| ||||| |||||| ||||||||||
Sbjct 61 GGATCAATCTCGCTCT-T-TCTCTCTC-GCTCCGTCTCTGTTGCTCGTTACGTGATCCGT 117
Query 169 AGCTGTCTCCGCTACTACCTTAATCAGCGAGCTTCTTCCGGTGGAATAATCTTCGGATAG 228
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 118 AGCTGTCTCCGCTACTACCTCAATCAGCGAGCTTCGTCCGGTGGAATTATCTTCGGAT-- 175
Query 229 GAGGAATCGGAGAATTCTTCTAATTGGGTGTCTGGGTTGGATTGGAATACGTAATTCTGT 288
||||||||||| | ||||||||| || |||||||||||||||| |||||||||| ||
Sbjct 176 -AGGAATCGGAGGA---TTCTAATTGTGTCTCTGGGTTGGATTGGATTACGTAATTCGGT 231
Query 289 TGGGTGTTCCAATTTCGCGTTCAAAATTAGGGTTTATAGAGGTCTCGCCTATGGCTCCTG 348
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 232 TGGATGTTCCTATTTCGCGTTCAAAATTAGGGTTTATAGAGGTCTCGCGTATGGCTCATG 291
Query 349 GGCGTAAAAGAGGAGCGAGCAAGGCCAAAG-CCAAAGGGCAGTTGGTTCTCGGTGATCTG 407
|||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 292 GGCGTAAAAGAGGAGCGAGCAAGGCC-AAGACCAAAGGGCAGTTGATTCTCGGTGATCTG 350
Query 408 GTTCTCGCCAAAGTCAAAGGCTTCCCTGCTTGGCCTGCCAAGATCAGCCGGCCTGAAGAT 467
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 GTTCTTGCCAAAGTCAAAGGCTTCCCTGCTTGGCCTGCCAAGATCAGCCGGCCTGAAGAT 410
Query 468 TGGGATCGTGCGCCAGACCCAAAGAAGTACTTTGTTCAGTTCTTTGGAACAGAGGAAATA 527
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGGGATCGTGCGCTAGACCCAAAGAAGTACTTTGTTCAGTTCTTTGGAACAGAGGAAATA 470
Query 528 GCTTTTGTTGCGCCACCTGATATCCAAGCCTTCACTAGTGAGGCAAAGAGCAAACTATTA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCTTTTGTTGCGCCACCTGATATCCAAGCCTTCACTAGTGAGGCAAAGAGCAAACTATTA 530
Query 588 GCAAGATGTCAAGGTAAAACTGTCAAGTACTTTGCACAAGCTGTAGAGCAAATCTGCACT 647
||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 531 GCAAGGTGTCAAGGTAAAACAGTCAAGTACTTTGCACAAGCTGTAGAGCAAATTTGCACT 590
Query 648 GCATTTGAAGGGTTGCAGAATCACAAGTCAAATGCTTTGGGCGATGAGGATTCTCTGGAT 707
|||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 591 GCATTTGAAGAGTTGCAGAATCACAAGTCAAATGTTTTGGGCGATGAGGATCCTCTGGAT 650
Query 708 GCTACTGAACCTGGTTTGACAAAGGCTGAGATAGTGGATGGAACAGATCATATTGTCATT 767
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 651 GCTGCTGAACCTGGTTTGACAAAGGCTGAGATAGAGGATGGAACAGATCATATTGTCATT 710
Query 768 GAGTCTGA-GAGAACTGATAACTTTAATTTTAGGGTGGATCCTTGCTTCCCCAAATTAGA 826
|||||||| | ||||| |||||||| ||| |||||||||||||||||| ||| | |
Sbjct 711 GAGTCTGATG-GAACTAATAACTTTGATTCTAGGGTGGATCCTTGCTT-CCC----T--A 762
Query 827 TGAGAATAATGGTGAGGAGAGAAAGGCTGAGATAAGGAAGCTAGATTCATCTTCATTTCT 886
|||||| |||||| |||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 763 --AGAATATTGGTGAAGAGACAAAGGCTGAGATATGGAAGCTAGATTCATCTCCATTTCT 820
Query 887 GGAATCAAAGGTCAAAACCACATCCCCTGTTAGCGAGTCACTGGAGCATAGTTCATTTGA 946
|||||||||| ||| |||||||| | ||| ||||||||||||||||||| |||||| |||
Sbjct 821 GGAATCAAAGATCACAACCACATTCTCTGGTAGCGAGTCACTGGAGCATGGTTCATATGA 880
Query 947 CCCTAAAATAAAGAAAGAAGATTTTGATAAAGGAACTGACGGTAGTGCTTGCAATGAACA 1006
||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 881 CCCTAGAATAAAGGAAGGAGATTTTGATAAAGGAACTGACGGTAGTGCTTGCATTGAACA 940
Query 1007 TTTTGGTAATGGCCAAAAGAAGCTGGCTAACGGTAAGAGAATTAAGAAGGAAGCAGGTGG 1066
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 941 TTTTGGTAATGGCCAAAAGAAGCTGGCCAACGGTAAGAGAATTAAGAAGGAAGCTGGTGG 1000
Query 1067 CTCTGATAGAAAAGGTGAAGATACAGTTCATCGAGACAAAAGCAATAACTCACATGTGCC 1126
|||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1001 CTCTGATATTAAAGGTGAAGATACAGTTCATAGAGACAGAAGCAATAACTCACATGTGCC 1060
Query 1127 TGGTGGTCGAACTGCCAGTGGTAACTCTGATTCCAAAAAATCGAAAGGTCTGTTGACAGA 1186
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1061 CGGTGGTCGAACTGCCAGTGGTAACTCTGATTCCAAAAAGTTGAAAGGTCTGTTGACAGA 1120
Query 1187 GAAAACCAGCTCCAAAGTGTCTGCTGATAAGCATGAAAATTCACCTGGCATCAAGGTTGG 1246
|||| | ||||||||||||||||||| ||||||||||||||||||||| |||||| |||
Sbjct 1121 GAAATCTAGCTCCAAAGTGTCTGCTGGCAAGCATGAAAATTCACCTGGCTTCAAGGGTGG 1180
Query 1247 GGTTTCCGGAAAGAAAAGGAGGCTTGAAAGTGAACAAGGTAAGCTTGCACCAAGAGTAGA 1306
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1181 GGTTTCCGGAAAGAAAAGGAGGCTTGAAAGTGAACTAGGAAAGGTTGCACCAAGAGTAGA 1240
Query 1307 TGAAAGCTCACGTGCTGCTAAAAAGCCGCGATGTGAAAGT---GCAGACAATAAAGTAAA 1363
|||||| ||||| ||||||||||||||||| ||||||||| |||||||| |||| |||
Sbjct 1241 TGAAAGTTCACGAGCTGCTAAAAAGCCGCGTTGTGAAAGTGCAGCAGACAAGAAAGAAAA 1300
Query 1364 GTGTGAAATTGATGATGGATCTGATTCTACTGGGACTGTATCAGATATTAAGCGTGAAAT 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GTGTGAAATTGATGATGGATCTGATTCTACTGGGACTGTATCAGATATTAAGCGTGAAAT 1360
Query 1424 TGTTTTAGGATTAGGTGCTCGCGGTGGAAATTTTCAATATGATAAAGAAG-CAGTTGCAT 1482
||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1361 TGTTTTAGGATTAAGTGCTCGCGGTGGAAATTTACAATATGATAAAGAAGTC-GTTGCAT 1419
Query 1483 ATACAAAGCGCCAGAGACAGACAATGGAGCATGCTACCTCTCCTTCTTTTTCTGGGTCTC 1542
|||||||||||| |||||| |||||||||||||| | |||||||||||||||||||||||
Sbjct 1420 ATACAAAGCGCCGGAGACAAACAATGGAGCATGCCATCTCTCCTTCTTTTTCTGGGTCTC 1479
Query 1543 GTGATAAATCTGGGAAAGGTCATCTGGAACAGAAAGACCGTTCCTCTCCTGTTCGTAATG 1602
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1480 GTGATAAATCCGGGAAAGGTCATCTGGAACAGAAAGACCGTTCCTCTCCTGTTAGTAATG 1539
Query 1603 TTAAGGCTCCAGCTGCACAGTCGCTGAAAAAACGGAGGGCTGTTTGTATCTACGACGAAG 1662
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1540 TTAAGGCTCCAGCTGCACAGTCGCTGAAAAAACGGAGGGCTGTTTGTATCTATGACGAAG 1599
Query 1663 ATGATGATGAAGATCCAAAAACCCCATTACATGGAAAACCAGCCATTGTTCCCCAAGCAG 1722
|||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||
Sbjct 1600 ATGATGATGAAGATCCAAAAACTCCATTACATGGCAGACCAGCCATTGTTCCCAAAGCAG 1659
Query 1723 CATCTGTTTTGACTGATGGTCCTAAAAGGGCTAATGTGTGTCACAGTACTTCTACAAAAG 1782
|||| |||||| ||| |||||||||||| |||| | ||||||| ||||||||||| ||||
Sbjct 1660 CATCAGTTTTGGCTGGTGGTCCTAAAAGTGCTACTCTGTGTCAAAGTACTTCTACCAAAG 1719
Query 1783 CTAAGATATCTGCTGGATCTACAGAGAGTACTGAAGTAAGAAAGTTCCCTCTGCGTAAAC 1842
|||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct 1720 GTAAGATGTCTGCTGGATCTACAGAGAATACTGAACTAAGGAAGTTCCCTCTGCGTAAAC 1779
Query 1843 ATTGTGAGGATGCATCACGTGTATTACCAAGCAATGCGGAGAATTCTACTAATAGCTTAC 1902
||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||||
Sbjct 1780 ATTGTGAGGATGCATCACGTGTATTACCAGGCAATGTGGAGAATTCGACTAACAGCTTAC 1839
Query 1903 CTGTGGTAAAACCCATTAATGAATTGCCGCCAAAGGATGTCAAACAGATCTTGCAATCTC 1962
| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1840 CCACGGTAAAACCCATCAATGAATTGCCGCCAAAGGATGTCAAACAGATCTTGCGATCTC 1899
Query 1963 CGAAGATGTCCCCTCAGCTGGTTTTAACTAACAAGCACGTTGCAGGACAGCATAAAGTTG 2022
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1900 CGAAGATGTCCCCCCAGCTGGTTTTAACTAACAAGCACGTTGCAGGACAGCATAAACTTT 1959
Query 2023 TAAAATCATCGGTGAAAGTTTCTGGTGTTGTGATGGCAAAGAAGCCTCAAAGTGATTCTT 2082
|||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1960 TAAAATCATCTGTGAAAGTTTCTGATGTTGTGATGGCAAAGAAGCCTCAGAGTGATTCTT 2019
Query 2083 GTAAGGAGGCGGTTGCGGGATCTGACAAAATAAGCTCTTCTCAGTCTCAGCCAGCAAATC 2142
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2020 GTAAGGAGACAGTTGCGGGATCTGATAAAATAAGCTCTTCTCAGTCTCAGCCAGCAAATC 2079
Query 2143 AGAGACACAAATCAGCTTCAGTTGGAGAGAGGCTAACAGTGGTTTCAAAAGCTGCATCAC 2202
||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 2080 AGAGACACAAAGCAGCTTCAGTTGGAGAGAGGCCAACAGTTGTTTCAAAAGCTGCATCAC 2139
Query 2203 GTTTGAATGACTCTGGTTCAAGAGACATGTCTGAGGACTTGTCTGCT-GCTATGCTTGAC 2261
||||||||||||||||||| ||||||||||||| |||||| ||| || || ||||||||
Sbjct 2140 GTTTGAATGACTCTGGTTCGAGAGACATGTCTGTGGACTTCTCTTCTGGC-ATGCTTGAT 2198
Query 2262 CTCAATAGAGAAAAGGGGAGTGCTACATTTACCAGTGCAAAGACCCCAGATTCGGCTGCA 2321
|||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2199 CTCAATCGAGAAAAGTGGAGTGCTCCATTTACCAGTGCAAAGACCCCAGATTCGGCTGCA 2258
Query 2322 TCTATGAAGGATCTAATTGCTGCTGCGCAGGCAAAAAGAAAACTTGCACATACACAAAAT 2381
|||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 2259 TCTATGAAGGATCTAATTGCAGCTGCGCAGGCAAAAAGAAAACTCGCACATTCACAAAAC 2318
Query 2382 TCAATTTTTGGGAATTTGAACCCTAGTTTCTTGAGCATCAGTGATACACAGGGGAGGAGC 2441
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2319 TCAATTTTCGGGAATTTGAACCCTAGTTTCTTGAGCATCAGTGATACACAGGTGAGGAGC 2378
Query 2442 CATAGCCCATTTATGGTTCAGAATGCTTCAGCTTCTGCTGCCATCTCAATGCCGTTAGTT 2501
||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||
Sbjct 2379 CATAGCCCATTTATGGTTCAGGATGCTTCAGCTTCTGCTGCCATCACAATGCCATTAGTT 2438
Query 2502 GTTCAAGGTCATCATCAACAAGGTTCTTCTCCGTCAAATCATGGGCATCAGTCCTTATCA 2561
|||||||| | |||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 2439 GTTCAAGG--A-CATCAACAAGGTTCTTCTCCGTCAAATCATGGCCATCAGTCCTCATCA 2495
Query 2562 AGAAATCAGATTGAGACTGATGATAATGAAGAGAGAAGACTTAGTTCAGGGCATAAGTCA 2621
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2496 AGAAGTCAGATTGAGACTGATGATAATGAAGAGAGAAGACTTAGTTCAGGACATAAGTCA 2555
Query 2622 GTTGGAGGTTCACTTAGTTGTAGCACTGAGGCTGCTATTTCTCGGGATGCTTTTGAAGGC 2681
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2556 GTTGGAGGTTCACTTAGTGGTAGCACTGAGGCTGCTGTTTCCCGGGATGCTTTTGAAGGC 2615
Query 2682 ATGTTAGAGACCTTATCAAGAACCAGGGAAAGTATTGGACGTGCAACTCGCCTAGCAATT 2741
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2616 ATGCTAGAGACCTTATCAAGAACTAGGGAAAGTATTGGACGTGCAACTCGCCTAGCAATT 2675
Query 2742 GATTGTGCCAAGTATGGGCTTGCTAGTGAGGTGGTGGAACTTCTCATACGAAAGTTGGAA 2801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2676 GATTGTGCCAAGTATGGGCTTGCTAGTGAGGTGGTGGAACTTCTCATACGAAAGTTGGAA 2735
Query 2802 AGTGAATCTCACTTCCATCGTAAAGTGGACTTGTTCTTTCTCGTCGACTCTATCACCCAG 2861
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2736 AGTGAATCTCACTTCCATCGTAAAGTGGACTTGTTCTTTCTCGTTGACTCTATCACCCAG 2795
Query 2862 CATTCGCACAGCCAAAAAGGTATTGCTGGTGCTTCTTACGTTCCTACTGTGCAAGCTGCT 2921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2796 TATTCGCACAGCCAAAAAGGTATTGCTGGTGCTTCTTACGTTCCTACTGTGCAAGCTGCT 2855
Query 2922 TTGCCACGTCTTTTAGGTGCCGCTGCTCCTCCAGGGACTGGTGCTAGTGATAACCGTCGT 2981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2856 TTGCCACGTCTTTTAGGTGCCGCTGCTCCTCCAGGGACTGGTGCTAGTGATAACCGCCGT 2915
Query 2982 AAATGTCTGAAGGTCCTGAAGTTGTGGCTTGAAAGGAAAGTTTTCCCTGAATCTCTTCTG 3041
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2916 AAATGTCTGAAGGTTCTGAAGTTGTGGCTTGAAAGGAAAGTTTTCCCTGAATCTCTTCTG 2975
Query 3042 CG-TCGTTATATTGATGATATTAGAGCTTCTGGTGATGATGCAACTGGTGGGTTTTCCCT 3100
|| | |||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 2976 CGGT-GTTATATTGATGATATTAGAGCTTCTGGTGATGACGCAACTGTTGGATTTTCCCT 3034
Query 3101 GCGACGTCCTTCTAGATCTGAGCGTGCTGTAGATGATCCTATCAGGGAAATGGAAGGGAT 3160
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3035 GCGACGTCCTTCTAGATCTGAGCGCGCTGTAGATGATCCTATCAGGGAAATGGAAGGGAT 3094
Query 3161 GCTTGTTGATGAGTATGGCAGCAATGCAACGTTTCAGCTGCCAGGGtttttttCATCTCA 3220
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 3095 GCTTGTTGATGAGTATGGCAGCAATGCAACATTTCAGCTGCCTGGGTTTTTTTCATCTCA 3154
Query 3221 TAATTTTGAAGATGATGAAGAAGATGACGATCTTCCAACATCACaaaaagaaaaaaGCAC 3280
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||
Sbjct 3155 TAATTTTGAAGATGATGAAGAAGATGACGATCTTCCAACGTCACAAAAAGCAAAAAGAAC 3214
Query 3281 ATCTGCGGGGGAACGTGTCAGTGCTTTAGACGACCTGGAAATACATGATACCTCGAGTGA 3340
|||||||||||| ||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct 3215 ATCTGCGGGGGAGCGTTTCAATGTTTTAGACGACCTGGAAATACATGATATTTCGAGTGA 3274
Query 3341 TAAATGCCATCGAGTTTTGGAGGATGTCGATCATGAACTTGAAATGGAAGATGTATCAGG 3400
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 3275 TAAATGCCATCGAGTTTTGGAGGATGTAGATCATGAACTGGAAATGGAAGATGTATCTGG 3334
Query 3401 CCAGCGGAAAGATGTAGCACCTTCCTCTTT-CTGTGAGAATAAGACAAAGGAGCAATCAC 3459
|||||||||||||||||||||||||||||| | |||||||| ||||| | |||| ||||
Sbjct 3335 CCAGCGGAAAGATGTAGCACCTTCCTCTTTGC-GTGAGAATGAGACA--G-AGCAGTCAC 3390
Query 3460 TGGATGTTATGGAACCTGTTGCAGAAAAATCAACCGAGTTCAATCCTCTTCCAGAGGATt 3519
|||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 3391 TGGATGTTATGGAACCAGTTGCAGAAAAATTAACTGAGGTCAATCCTCTTCCAGAGGATT 3450
Query 3520 ctcctccgctacctcaggaatcacctccccct-ctccctcctctaccaccttctccccca 3578
|||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||
Sbjct 3451 CTCCTCCGCTACCTCACGAATCACCTCCATCTAC-CCCTCCTCTACCACCTTCTCCCCCA 3509
Query 3579 cctccatcccctcctc-tcc-c-GCCATCA-----TC--T--CTGCCACCACCGCCTCCC 3626
|||||||||||||||| ||| | | |||| || | |||||||||||||| |||
Sbjct 3510 CCTCCATCCCCTCCTCCTCCGCCGTCATCTCCGCCTCCATTACTGCCACCACCGCCCCCC 3569
Query 3627 GCAGCGCTGttcccacctctt-ccaccacctccgtctcagcctcctccaccaccac---t 3682
||||||| |||||||||||| || ||||||| |||||||||||| |||||||| | |
Sbjct 3570 GCAGCGCACTTCCCACCTCTTTCC-CCACCTCAGTCTCAGCCTCCACCACCACCGCCCCT 3628
Query 3683 ttcacctccaccttcaccgccgcctccacctccaccgccttcacAATC-AT---TAA--C 3736
||||||||| |||||||||||||||||||||||||| ||||||||||| || | |
Sbjct 3629 TTCACCTCCGCCTTCACCGCCGCCTCCACCTCCACCTCCTTCACAATCTATAGCTTTTTC 3688
Query 3737 A--A-C-T---CAACTC-----TCCATAGCTAGCCATCATCAGATACCATTTCAACCAGG 3784
| | | | |||||| ||||||||| |||| |||||| ||||||||||||||||
Sbjct 3689 AGCATCATTAACAACTCAACAATCCATAGCTGGCCACCATCAGTTACCATTTCAACCAGG 3748
Query 3785 ATTTCCTCCCCCAACATATCCTTTATCGCATCAAACATACCCAGGATCTATGCAGCAAGA 3844
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3749 ATTTCCTCCCCCAGCATATCCTCTATCGCATCAAACATACCCAGGATCTATGCAGCAAGA 3808
Query 3845 CCGCTCTAGTATTTTCACCGGTGATCAAATTGTCCAGGGGCCTGGAAATTCTTCACGTGG 3904
||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 3809 CCGCTGTAGTATTTTCACTGGTGATCAAATTGTCCAAGGGCCTGGAAATTC---ACGTGG 3865
Query 3905 AGGTCTTGTTGAGGGCGCTGGAAAACCCGAATATTTTGTGCAGCAGTCCTCCAGTTTTTC 3964
| ||| ||||||||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 3866 AAGTCATGTTGAGGGTGCTGGAAAACCCGAATATTTTGTGCAACAGTCATCTAGTTTTTC 3925
Query 3965 ACCAGCAGGAGTGTGCAGCTCCAGGGAGCCTTCATCATTTACTTCCTCCAGACAACTAGA 4024
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3926 ACCAGCAGGAGTGTGCAGCTCCAGGGAACCTTCATCATTTACTTCCTCCAGACAACTAGA 3985
Query 4025 ATTTGGGAACAGCGATGTACTTTTCAATCCTGAAGCTTCTTCACAGAACCATCGGTTTCA 4084
|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 3986 ATTTGGGAGCAGCGATGTACTTTTTAATCCTGATGCTTCTTCACAGAACCATCGGTTTCA 4045
Query 4085 GCCGAGCACCCCTCTGTCCCAAAGACCTATGGTTAGGTTGCCTTCAGCACCGTCCAGTCA 4144
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 4046 GCCGAGCACCCCTCTATCCCAAAGACCTATGGTTAGGCTGCCTTCAGCACCGTCCAGTCA 4105
Query 4145 TTTTTCGTATCCAAGCCATATTCAATCACAATCTCAGCATTCCTACACTCATCCTTACCC 4204
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 4106 TTTTTCGTATCCAAGCCATGTTCAATCACAATCTCAGCATTCCTACACTCATCCTTACTC 4165
Query 4205 TTTCCCACCTCAACGTGATGATGCACGGCGATACAGAAATGAGGAACCATGGCGGATTCC 4264
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 4166 TTTCCCACCTCAACGTGATGATGGACGGCGATACAGAAATGAGGAACCATGGAGGATTCC 4225
Query 4265 TTCAAGTGGACATAGTGCAGAAAATCAGAATGGTGCCTGGATACATGGAAGAAATTCACA 4324
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 4226 TTCAAGTGGAAATAGTGCAGAAAATCAGAGTGGTGCCTGGATACGTGGAAGAAATTCACA 4285
Query 4325 TCCAGGCCTTCCTAGAGTCACAGACAGTTTCTTTCGGCCACCTCCAGAACGTCCACCTTC 4384
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 4286 TCCAGGCCTTCCTAGAGTCACAGATGGTTTCTTTCGGCCACCTCCAGAACGTCCACCTTC 4345
Query 4385 AGGGACAATGAACTATCAGCCTTCTGCTGCTAGTAACTTACAAGCTGTCCCTGCAATTCC 4444
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 4346 AGGGACAATGAACTATCAACCTTCTGCTGCTAGTAACTTACAAGCTGCCCCTGCAATTCC 4405
Query 4445 AGGTCATACTGCTCCCCAGATGCTACCGTCTCGGCCAGATATACCTACCGTGAATTGTTG 4504
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4406 AGGTCATGCTGCTCCCCAGATGCTACCATCTCGGCCAGATATACCTACCGTGAATTGTTG 4465
Query 4505 GAGGCCAGCTTGAAGTGAAGGTAGAATTTTGTTGGCCTGCTCCTGTTAGTATCAATGGAA 4564
||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 4466 GAGACCAGCTTGAAGTGAATGTAAAATTTTGTTGGCCTGCTCCTGTTAGTATCAATGGAA 4525
Query 4565 AAGAAGCTGCTAGTGTCTCATTAACAAGGTTAATCCTCTAGGTTTGGTTTTCTAAATACT 4624
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 4526 AAGAAGCTGCTAGTGTCTCATTAACAAGGTTAATCCTCTAGGTTTGATTTTCTAAATACT 4585
Query 4625 AAAGTCAAGTCTTTTATCAGTGTTGTCATCAAACAGTTACAGTTATACTACTTTCTCTTC 4684
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 4586 AAAGTCAAGTCTTTTATCAGTGTTGTCATCAGACAGTTACAGTTATACTACTTTCTCTTC 4645
Query 4685 CATGGAGGCCTTTTTCGGATATATCCACTTCCAGAGGCACAAAAACTACTGCAGGCTTTT 4744
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4646 CATGGAGGACTTTTTCGGATATATCCACTTCCAGAGGCACAAAAACTACTGCAGGCTTTT 4705
Query 4745 GCCAGGATTCTGTATATTGTAtttttttCCTGACAAATGTATCTGTGGATCATATTCTTA 4804
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4706 GCCAGGATTCTGTATATTGTATTTTTT-CCTGACAAATGTATCTGTGGATCATATTCTTA 4764
Query 4805 ACAGTATAGGTTC-t-tttttt-ATTGGTTAGTACTTCAGTTCCTGTAATTATGCCAATC 4861
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 4765 ACAGTATAGGTTCCTGTTTTTTTATTGGTTAGTACTTCAGTTCCTGTAATTATGCCAATC 4824
Query 4862 ACAATTTGCTCAAAGCTTTTACTGGAATGA--TTTGATCTTCATAGTCAAACATAGtttt 4919
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 4825 ACAATGTGCTCAAAGCTTTTACTGGAATGAAATTTGAACTTCATAGTCAAACATAGTGTT 4884
Query 4920 ttttt 4924
|||||
Sbjct 4885 TTTTT 4889
> Ahg487657 jgi|Araly1|487657|fgenesh2_kg.6__791__AT5G08230.1
Length=4402
Score = 837 bits (453), Expect = 0.0
Identities = 1091/1389 (79%), Gaps = 84/1389 (6%)
Strand=Plus/Plus
Query 1906 TGGTAAAACCCATTAATGAA-TTGCCGCCAAAGGATGTCAAACAGATCTTGCA-ATCTCC 1963
||| |||| ||| | || || || || ||| || ||||||| ||||||||| | ||||||
Sbjct 1736 TGGGAAAA-CCAGTCATCAAGTTACCTCCACAGAATGTCAAGCAGATCTTG-AGATCTCC 1793
Query 1964 GAAGATGTCCCCTCAGCTGGTTTT-AACTAACAAGCACGTTGCAGGACAGCATAAAGTTG 2022
|||| |||||||||| | ||||| |||||| ||| || ||||||||| ||
Sbjct 1794 TAAGAAGTCCCCTCAG-TTGTTTTCAACTAAGGAGCTGGTGGCAGGACAG----AA---- 1844
Query 2023 TAAAATCATCGGTGAAAGTTTCTGGTGTTGTGATGGCAAAGAAGCCTCAAAGTGATTCTT 2082
|||||| | | ||||| ||||||| | |||| |||| || |||| |||||||||
Sbjct 1845 TAAAAT--T--GCAAAAGTCTCTGGTGCGGGGATGCCAAAAAAATATCAAGGTGATTCTT 1900
Query 2083 GTAAGGAGGCGGTTGCGGGATCTGACAAAATAAGCTCTTCTCAGTCTCAGCCAGCAAATC 2142
||||| || || || || ||||| | | ||||||||||||| |||||| |||||||||
Sbjct 1901 CCAAGGACGCAGTGGCTGGTTCTGATAGAGTAAGCTCTTCTCATTCTCAGACAGCAAATC 1960
Query 2143 AGAGACA-CAAATCAGCTTCAGTTGGAGAGAGGCTAACAGTG-GTTTCAAAAGCTGC-A- 2198
||||| | |||| |||||| |||| || | || ||||| | | | |||| ||| |
Sbjct 1961 AGAGA-AGCAAACCAGCTT---TTGGGGAAAAGCCAACAG-GCACTCCGAAAGTTGCAAC 2015
Query 2199 T--CA--CGTTTGAATGACT-CTG--GT-TCAAGAGACA-TGTCTGAGGACTTGTCTGCT 2249
| || ||| || | || | || || ||||| |||| | |||| | |||||||||||
Sbjct 2016 TCGCAGTCGTCTGGACGA-TGTTGAAGTGTCAAGGGACACT-TCTGTGAACTTGTCTGCT 2073
Query 2250 G-CTATGCTTGACCTCAAT-AGAGAAAAGGGGAGTGCTACATTTACCAGTGCAAAGACCC 2307
| | || |||| ||||| | |||||| || ||||| |||| | |||| || |
Sbjct 2074 GAC-GTGATTGATGTCAATCA-AGAAAATGGAAGTGCCCCATTGATCAGTTTTGGGATGC 2131
Query 2308 CAGATTCGGC-TGCATCTATGAAGGATCTAATTGCTGCTGCGCAGGCAAAAAGAAAACTT 2366
|||||| | | |||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 2132 GAGATTCTTCAT-CATCTATGAAGGATCTAATTGCAGCTGCCCAAGCAAAAAGAAAACAA 2190
Query 2367 GCACATACACAAAATTCAATTTTTGGGAAT-TTGAACCCTAGTT-TCTTGAGCATCAGTG 2424
|||||| |||| | |||| |||| |||| | | ||| || || ||| | |||| |
Sbjct 2191 GCACATTCACATACTTCACCGTTTGTGAATCTAG-ACCATAATTCCCTT-ACCATC---G 2245
Query 2425 ATACACAGGGGAG--GAGCCATAGCCCATTT-ATGGTTCAGAATGCTTCAGCTTCTGCT- 2480
|| || | | || |||||| ||||| ||| |||||||| |||| |||| ||||| ||
Sbjct 2246 ATTCA-A-TGCAGTCGAGCCAAAGCCC-TTTCATGGTTCAAAATGTTTCATCTTCTACTG 2302
Query 2481 GCCATCTCAATGCCG-TTAGTTGTTCAAGGTCATCATCAACAAGGTTCTTCTCCGTCAAA 2539
|| || | |||| | || |||| || ||| | |||||| ||| ||| ||| ||||||
Sbjct 2303 GCGAT-GCCATGCTGATT-GTTGCTC-AGG--AACATCAAGAAGATTCGACTCTGTCAAA 2357
Query 2540 TCATGGGCATCAGTCCTTATCAAGAAATC-AGATTGAGACTGATGATAATGAAGAGAGAA 2598
|||||| | ||||||| |||||| | | || || |||||| || |||||||||||||
Sbjct 2358 TCATGGCCGCCAGTCCTCATCAAGTAGCCAAG-CTGGGACTGAAGAGAATGAAGAGAGAA 2416
Query 2599 GACTTAGTTCAGGGCATAAGTCAGTTGGAGGTTCACTTAGTTGTAG-CACTGAGGCTGCT 2657
| ||||||||||||||| ||||| ||| |||||||| ||| || | ||||||||||||
Sbjct 2417 GGTTTAGTTCAGGGCATAGGTCAGGTGGTGGTTCACTGAGTGGT-GCCACTGAGGCTGCG 2475
Query 2658 ATTTCTCGGGATGCTTTTGAAGGCATGTTAGAGACCTTATCAAGAACCAGGGAAAGTATT 2717
|| |||| ||| ||||||| || ||| ||||||| ||||| ||||| | ||||||||||
Sbjct 2476 ATAACTCGAGATACTTTTGAGGGAATGATAGAGACTTTATCCAGAACTAAGGAAAGTATT 2535
Query 2718 GGACGTGCAACTCGCCTAGCAATTGATTGTGCCAAGTATGGGCTTGCTAGTGAGGTGGTG 2777
|||||||||| ||||| |||||||||||||||||||||||| |||| |||||||| |||
Sbjct 2536 AGACGTGCAACACGCCTGGCAATTGATTGTGCCAAGTATGGGATTGCCAGTGAGGTTGTG 2595
Query 2778 GAACTTCTCATACGAAAGTTGGAAAGTGAATCTCA-CTTCCATCGTAAAGTGGACTTGTT 2836
||||||||||| ||||||||||||| ||| |||| |||| || ||||||||| ||||
Sbjct 2596 GAACTTCTCATTCGAAAGTTGGAAATTGAGCCTCATTTTCC-CCGAAAAGTGGACCTGTT 2654
Query 2837 CTTTC-TCGTCGACTCTATCACCCAGCATTCGCACAGCCAAAAAGGTATTGCTGG-TGCT 2894
||||| || | || || |||| |||| ||| || ||||||||||||| || || | ||
Sbjct 2655 CTTTCTTC-TTGATTCGATCATCCAGTGTTCCCATAGCCAAAAAGGTAGAGCCGGCT-CT 2712
Query 2895 TCTTACGTTCCTACTGTGCAAGCTG-CTTTGCCACGTCTTTTAGGTGCCGCTGCTCCTCC 2953
|| || |||||||||| || || | | || || || ||| ||||||| |||||||||||
Sbjct 2713 TCATATATTCCTACTGTTCAGGCAGCCCTT-CCGCGCCTTCTAGGTGCTGCTGCTCCTCC 2771
Query 2954 AGGGACTGGTGCTAGTGATAACCGTCGTAAATGTCTG-AAGGTCCTGAAGTTGTGGCTTG 3012
||||||||||||| |||| || |||| | |||||| | ||||| ||| ||||||||||
Sbjct 2772 AGGGACTGGTGCTCGTGAAAATCGTCATCAATGTC-GCAAGGTGTTGAGGTTGTGGCTTA 2830
Query 3013 AAAGGAAAG-TTTTCCCTGAATCTCTTCTGCGTCGTTATATTGATGATATTAGAGCTTCT 3071
||||| ||| ||||||| || |||||| ||||||||||||||| |||| || | ||||||
Sbjct 2831 AAAGG-AAGATTTTCCCAGATTCTCTTTTGCGTCGTTATATTGGTGATCTTGGTGCTTCT 2889
Query 3072 GGTGATGATGCAACTGGTGGGTTTTCCCTGCGACGTCCTTCTAGATCTGAGCGTGCTGTA 3131
||||||||| ||| | |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2890 GGTGATGATAAAACCGTTGGGTTTTCCCTACGACGTCCTTCTAGATCTGAGCGTGCTGTA 2949
Query 3132 GATGATCCTAT-CAGGGAAATGGAAGGGATGCTTGTTGATGAGTATGGCAGCAATGCAAC 3190
||||||||| | | |||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct 2950 GATGATCCTCTAC-GGGACATGGAAGGGATGCTTGTCGACGAGTATGGGAGCAATGCAA- 3007
Query 3191 GTTT-CAGCTGCCAGGGtttttttCATCTCATAATTTTGAAGATGATGAAGAAGATGACG 3249
|||| |||||||| |||| ||| || ||||| | ||||| |||||||||||||||||| |
Sbjct 3008 GTTTTCAGCTGCCGGGGTATTTATCTTCTCACACTTTTGGAGATGATGAAGAAGATGAGG 3067
Query 3250 ATCTTCCAA 3258
|||||||||
Sbjct 3068 ATCTTCCAA 3076
Score = 416 bits (225), Expect = 7e-115
Identities = 538/682 (79%), Gaps = 50/682 (7%)
Strand=Plus/Plus
Query 339 ATGGCTCCTGGGCGTAAAAGAGGAGCGAGCAAGGCCAAAGCCAAAGG-GCAGTTG-GTTC 396
|||||||||||||||||||||||||||| ||| |||| |||| ||| || | || | |
Sbjct 1 ATGGCTCCTGGGCGTAAAAGAGGAGCGAACAAAGCCATGGCCATAGGAGC-GCTGAGAT- 58
Query 397 TCGGTGATCTGGTTCTCGCCAAAGTCAAAGGCTTCCCTGCTTGGCCTGCCAAGATCAGCC 456
| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||
Sbjct 59 TGGGTGATCTCGTTCTTGCTAAAGTCAAAGGCTTCCCTGCTTGGCCTGCTAAGATCGGCC 118
Query 457 GGCCTGAAGATTGGGATCGTGCGCCAGACCCAAAGAAGTACTTTGTTCAGTTCTTT-GGA 515
||||||||||||| ||| || |||||||||||||| ||||||||||||| ||| |||
Sbjct 119 AGCCTGAAGATTGGAATCAAGCTCCAGACCCAAAGAAACACTTTGTTCAGTT-TTTCGGA 177
Query 516 ACAGAGGAAATAGCTTTTGTTGCGCCACCTGATATCCAAGCCTTCACTAGTGAGGCAAAG 575
||| ||||||||| ||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 178 ACACAGGAAATAGGTTTTGTTGCGCCACCTGATATTCAACCCTTCACTAGCGAGGCAAAG 237
Query 576 AGCAAACTATTAGCAAGATGTCAAGGTAAAACTGTCAAGTACTTTGCACAAGCTGTAGAG 635
| ||||||||||||||||||||||||||||| | |||||||||| ||||||| || |||
Sbjct 238 AATAAACTATTAGCAAGATGTCAAGGTAAAACAGCCAAGTACTTTTCACAAGCCGTGGAG 297
Query 636 CAAATCTGCA-CTGCATTTGAAGGGTTGCAGAATCACAAGTCAAATGCTT-TGGGCGATG 693
|||||| | |||||||||||| || |||||||||||||||| || | | || |||
Sbjct 298 GAAATCT-CTGCTGCATTTGAAGAGTCGCAGAATCACAAGTCAGATA-TAGTAGGTAATG 355
Query 694 AGGATTCTCTGGA-TGCTACTGAACCTGGTTTGACAAAGGCTGAGATAGTGGATGGAACA 752
||| | || | || |||| ||||||| || |||| ||| || ||||| || || ||
Sbjct 356 AGGCT-CTTTTGAATGCTGTTGAACCTAGTGTGACGAAGCCTAAGATATTGAATC-AA-- 411
Query 753 GATCATATTGTCATTGAGTCTGAGAGAA-CTGATAACTTTAATTTTAGGGTGGATCCTTG 811
| | || || | ||| | || | || ||||||| ||| | | ||||| |||||||||
Sbjct 412 G--C-TA--GT-AGTGA-TG-GA-A-AATCTGATAAGTTTGACTCTAGGGCGGATCCTTG 461
Query 812 -CTTCCCCAAATTAGATGAGAATAATGGTG-AGGAGAGAAAGGCTGAGATAAGGA-AGCT 868
||| ||||||| |||||||||||||| || ||| |||| |||| ||| ||| | |
Sbjct 462 TCTTGGT-AAATTAGTTGAGAATAATGGTGCAG-AGAAAAAGCCTGATATA-GGAGATC- 517
Query 869 AGATTCATCTTCATTTCTGGAATCAAAGGTCAAAACCACATCCCCT-GTTAGCGAGTCAC 927
||| |||| || | | ||||||| || |||||||||||| || || ||| ||
Sbjct 518 AGA---ATCT--AT--C-GAAATCAAATAACAGAACCACATCCCCAAGT-AGTGAGCCAT 568
Query 928 TGGAGCATAGTTCATTTGACCCTAAAATAAAGAAAGAAGATT-TTGATAAAGGAACTGAC 986
|||||||| | ||| |||||||| ||| | || || || |||||||| | ||||
Sbjct 569 TGGAGCATGGATCACCTGACCCTATTTTAATGGTAGCAG-TTGTTGATAAA--AT-TGAC 624
Query 987 GGTAGTG-CTTGCAATGAACAT 1007
||| || |||||| ||| |||
Sbjct 625 GGT-GTCACTTGCACTGACCAT 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 186444050127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5