BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23160.1
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489172 jgi|Araly1|489172|fgenesh2_kg.6__2306__AT5G23160.1 1254 0.0
> Ahg489172 jgi|Araly1|489172|fgenesh2_kg.6__2306__AT5G23160.1
Length=991
Score = 1254 bits (679), Expect = 0.0
Identities = 903/1008 (90%), Gaps = 27/1008 (3%)
Strand=Plus/Plus
Query 7 ACATTTTTGGATACTTCTTTTCATCTTATAATGGGCAAACCGGAGAGAAAAGTCCGAGAG 66
|||||| ||||||||| || ||| ||| |||||||||| |||||||| ||||||||||||
Sbjct 1 ACATTTCTGGATACTTGTTCTCAACTTTTAATGGGCAAGCCGGAGAGGAAAGTCCGAGAG 60
Query 67 AGAATTAACTCTTCATCTTCTTATTTTCTTCGATGTTTCGGGGTTTCCCGGAAAATTCAC 126
||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 61 AGAATAAACTCTTCGTCTTCTTATTTTCTTCGCTGTTTCGGGGTTTCTCGGAAAATTCAC 120
Query 127 TCGGACAAACCAATAGTAGACGCTGGTCAAGAGATC-CAGAAGACGAAGAAGAAGACGAG 185
|| ||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |||
Sbjct 121 TCAGACAAACCAATAGTAGATGCTGGTCAAGAGA-CGCAGAAGACGAAGAAGAAGATGAG 179
Query 186 AACTCGTTGGTTTTCACGGCCAACAAAATTCCGTTCCAAGGA--G-GAGATCACA-C--C 239
|||||||||||||||||||||||||||||| |||| ||| | | || |||||| | |
Sbjct 180 AACTCGTTGGTTTTCACGGCCAACAAAATTTCGTTTGAAGAACGGTGATATCACACCGGC 239
Query 240 GACGTCGATTTACAAG-TCGGAGAAACAAAAGTTGACTTTTGAAGATGATAAGCAAAATC 298
|||||||||| || || | |||| ||||| | |||| |||||||||| ||||||||||
Sbjct 240 GACGTCGATTCACGAGAT-GGAGTGTCAAAACTCGACTGTTGAAGATGACAAGCAAAATC 298
Query 299 TGTTTCGGGTGATACGTCATGTGA-CCGATCGAAAAAATGTTGCGACAAGTGGTTATAAG 357
|||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||
Sbjct 299 TGTTTCGGGTGATACGTCATGT-ACCCGATCGGAAAAATGTTGCGACTAGTGGTTATAAG 357
Query 358 ACCGTTGATCATGAAACTAAAGAGAAAGACACGAACGAACAAAGAGACATAAATCCGGAG 417
||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 358 GCCGTTGATCATGAAAGTAACGAGAAAGACACGACCGAACGAAGAGACATAAATCCGGAT 417
Query 418 CCGTTGAGTTTCTTAGGATACGATGACAAGTTTTACGAACGGGTATCAACAGACGGAAAA 477
|| |||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||
Sbjct 418 CCATTGAGTTTCTTAGGGTATGATGACACGTTTTACGAACGGGTATCAACAGACGGGAAA 477
Query 478 CTTGACCCGACTAATATCGTCGGGTCGGGGTCCAAGCCGAAGGAAATAAGGGAGAAGTCG 537
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 478 CTTGACCCGACTAATATCGTCGGGTCCGGATCCAAGCCGAAGGAAATAAGGGAGAAGTCG 537
Query 538 TCAAGGGTTAGAAAACGGTCGCGGGTCTCTAAACTTGACCCGGTAATTGGGATATCAATC 597
|||||||| |||||| |||| ||||| |||| ||||||||||| |||||||||||||||
Sbjct 538 TCAAGGGTCAGAAAAGGGTCCCGGGTGGCTAAGCTTGACCCGGTGATTGGGATATCAATC 597
Query 598 ATAATGCTAACGCTGATGATAATGTTGACGTGGGGACGTTTGTGCGCGATACTTTGTACA 657
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 ATAATGTTAACGCTAATGATAATGTTGACGTGGGGACGTTTGTGTGCGATACTTTGTACA 657
Query 658 TCCACTTGGTGCTACATTTTCCCTCGTCTCAAAGAAGCTGCTACTGCGGTTGCGGTGGTC 717
|| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
Sbjct 658 TCTACTTGGTGCTACATTCTCCCTCGTCTCAAAGAAGCTGCCACTGCGGTTGCGGTGGCC 717
Query 718 AACCGCAAACGCAGTGGTAGCGGTAAAGGTGAAGAAGGGTCGTTTCAAGGTGATTTGGAT 777
|| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 718 AAACGCAAACGCAATGGTAGCGGTAAAGGTGAAGAGGGGTCGTTTCAAGGTGATCTGGAT 777
Query 778 TTGAACTCTGTGGCTTATAAGAAAAAAGTCGTTTTGGAAGGATTTCTTGTTCGGCAACAC 837
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTGAACTCTGAGGCTTATAAGAAAAAAGTCGTTTTGGAAGGATTTCTTGTTCGGCAACAC 837
Query 838 AGAGTTTCGATGTGACAACGTTTCAATTCTCTTTATTTATTTTCTCAAATCTTGATGGTG 897
| |||||| |||||||||||||||||||| ||| ||||||| || | ||||
Sbjct 838 CGCGTTTCGCTGTGACAACGTTTCAATTCT-TTTC--------CTCAAATTTTAAAGGTG 888
Query 898 TAATTTTCTGATGAGTTGTTGATTTTTGTTTGGTCGTATCTTCCTCTCTTCTT-TTGACA 956
||| |||||| | | ||||||||||| || |||||||||||||| | || || ||||||
Sbjct 889 TAAATTTCTGTTTATTTGTTGATTTT-GTCTGGTCGTATCTTCCA-T-TT-TTGTTGACA 944
Query 957 TGGCGAATATGTGTATGAAAACTATAAAATACTAATCACGATTGCTAT 1004
| | ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 945 TTGTGAAAATGTGTATGAAAACTATAAA-TACTAATCACGATTGCTAT 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37360458660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5