BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23170.1
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489173 jgi|Araly1|489173|fgenesh2_kg.6__2307__AT5G23170.1 1620 0.0
> Ahg489173 jgi|Araly1|489173|fgenesh2_kg.6__2307__AT5G23170.1
Length=1212
Score = 1620 bits (877), Expect = 0.0
Identities = 1136/1254 (91%), Gaps = 46/1254 (4%)
Strand=Plus/Plus
Query 1 GCAAACTTACCGATGAAGGAGTTCGATTACGACAAGCTTGTCACTGCCATAGATCGATTC 60
||||| ||||||||||||||||||||||| ||||||||| |||||| || ||||||||||
Sbjct 1 GCAAATTTACCGATGAAGGAGTTCGATTATGACAAGCTTTTCACTGTCACAGATCGATTC 60
Query 61 TCTCCTTCGAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCATTCAAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120
Query 121 CACCA-AGACGTTGACGA-AACACGTCAAAGAGTCGTAGCCATTAAAACACcatcatcat 178
||||| | || ||||| || || |||||||||||||||||||||| ||||||||||||
Sbjct 121 CACCATA-ACCACGACGACAA-ACATCAAAGAGTCGTAGCCATTAAAGCACCATCATCAT 178
Query 179 tatctccctcatcaccatcctcatcatcatcatcaaaatcaGAACAAACGAAGAAACTAG 238
|| | | | ||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 TA--T-CATTATC-TC--CCTCATCATCATCATCCAAATCAGAACAAACGAAGAAACTAG 232
Query 239 AAAACGAGATCGACGTTATGTCATCGTTACCTTATCACCCACACGTGTTAAGCTTTCTCG 298
||||||||||| | || |||||||||||||| |||||||||||||| || |||||| | |
Sbjct 233 AAAACGAGATCAATGTAATGTCATCGTTACCATATCACCCACACGTTTTGAGCTTTTTAG 292
Query 299 GCCATGCCGAGAAAAAACTCATGGTCGTTGAGTACATGCCAAACGAATCGTTATACCAAT 358
| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
Sbjct 293 GTCATGCCGAGAAAAAACTCATGGTCGTTGAGTTCATGCCAAACGGATCGTTACACCAGT 352
Query 359 TATTACACGTGTCAACTGATCCTCTTCCCACGTGGCTTAAACGCATCGAAATCGCTCTTC 418
|||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 353 TATTACACGTGTCAGCTGATCCTCTTCCCACTTGGCTTAAACGCATTGAAATCGCTCTTC 412
Query 419 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACACGGTATCATCCACCGCGATATCAAAT 478
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 413 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACAAGGTATCATCCACCGTGATATCAAAT 472
Query 479 CGGAAAATATTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 538
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CGGAAAACGTTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 532
Query 539 TTGATTTTGGAGGTGATAAGAAGATAAGACCGGCTCCGGCGGGAACTATTGGATACTTAG 598
||||||||||| ||| |||||| ||||| || |||||||||||||||||||||||||
Sbjct 533 TTGATTTTGGACGTG---AGAAGACGAGACCAGCGCCGGCGGGAACTATTGGATACTTAG 589
Query 599 ATCCGTGTTACACGTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 658
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 ATCCGTGTTATACTTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 649
Query 659 TCGTTTTGTTGGAGATTGTTAGTTGTAGAAAAGCTATTGACGTCTCTCGTTCGCCGGCGT 718
| |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| | |
Sbjct 650 TTGTTTTGTTGGAGATTGTTAGCTGTAGGAAAGCTATCGAGGTCTCTCGTTCGCCGTCTT 709
Query 719 CGATAGTAGACTGGGCGGTTCCGTTGATTAAGGAAGGGAGGATCGGAGAAATATGCGGCG 778
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 710 CGATAGTGGACTGGGCGGTTCCGTTGATTAAAGAAGGGAGGATCGGAGAAATCTGCGGCG 769
Query 779 GAGGAGGAGGAGGATCGGGTGTTTTCCGGGGAATGAGTCTACGGTTGTTGCGTATGGCGG 838
|||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||
Sbjct 770 GAGGAGGAGGAGGATCGGCTGTTTTCCGGGGAATGAATTTACGGTTGTTAAGTATGGCGG 829
Query 839 CGAGATGCGTTTCATCTGACGTGGAATCACGACCGTGTTTCGGGGAGATCACGGCGGAGA 898
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 830 CGAGATGCGTTTCTTCCGACGTGGAATCACGTCCGTGTTTCGGGGAGATCACGGCGGAGA 889
Query 899 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATGAGCGTTTTGCGTC 958
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 890 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATTAGCGTTTTGCGTC 949
Query 959 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1009
Query 1019 AAACTTGCCGCGTTTGGTGAGAGTTTATGAATTGC-GGGTCAAATATCGAATCGGGTCGG 1077
||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||
Sbjct 1010 AAACTTGCCGCGTTTGGTGAGAGTTAATGAA--GCCGGGTCAAATGTCGAATCGGGTCGG 1067
Query 1078 GTTA-AAAGGTTGGGTTGGTTACAAAAAGAAAACAACCATCTAAATCCAAGCAGAAGAAC 1136
||| ||||| ||| || ||||||| | || | | ||| ||||||||||||||||||
Sbjct 1068 GTTGGAAAGGATGG-TT----ACAAAAA-ACAA-A-C-ATCCAAATCCAAGCAGAAGAAC 1118
Query 1137 AATCGCTAAACAGAATGATATATTTATCGTTTGTAGTAAGTAGCATTTAATTTTGTTATC 1196
| |||| ||| | | || || | | || ||||||||||||||||||||
Sbjct 1119 ACTCGCGAAA-A-A--GA-AT-------G-----A-TA--TAGCATTTAATTTTGTTATC 1158
Query 1197 CCTTCGGATAATGTAACCATTAATCCATTACTAATTCAGTCGTGGTCGATTGAT 1250
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1159 CCTTCGGATAATGTAACCATTAATCCATTATTAATTCAGTCGTGATCGATTGAT 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46776819159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5