BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23170.1 Length=1252 Score E Sequences producing significant alignments: (Bits) Value Ahg489173 jgi|Araly1|489173|fgenesh2_kg.6__2307__AT5G23170.1 1620 0.0 > Ahg489173 jgi|Araly1|489173|fgenesh2_kg.6__2307__AT5G23170.1 Length=1212 Score = 1620 bits (877), Expect = 0.0 Identities = 1136/1254 (91%), Gaps = 46/1254 (4%) Strand=Plus/Plus Query 1 GCAAACTTACCGATGAAGGAGTTCGATTACGACAAGCTTGTCACTGCCATAGATCGATTC 60 ||||| ||||||||||||||||||||||| ||||||||| |||||| || |||||||||| Sbjct 1 GCAAATTTACCGATGAAGGAGTTCGATTATGACAAGCTTTTCACTGTCACAGATCGATTC 60 Query 61 TCTCCTTCGAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTCATTCAAAACTCATCGGTAAAGGAAGCCATGGCTATGTTTATAAAGCCCTTCTTCAT 120 Query 121 CACCA-AGACGTTGACGA-AACACGTCAAAGAGTCGTAGCCATTAAAACACcatcatcat 178 ||||| | || ||||| || || |||||||||||||||||||||| |||||||||||| Sbjct 121 CACCATA-ACCACGACGACAA-ACATCAAAGAGTCGTAGCCATTAAAGCACCATCATCAT 178 Query 179 tatctccctcatcaccatcctcatcatcatcatcaaaatcaGAACAAACGAAGAAACTAG 238 || | | | ||| | |||||||||||||||| ||||||||||||||||||||||||| Sbjct 179 TA--T-CATTATC-TC--CCTCATCATCATCATCCAAATCAGAACAAACGAAGAAACTAG 232 Query 239 AAAACGAGATCGACGTTATGTCATCGTTACCTTATCACCCACACGTGTTAAGCTTTCTCG 298 ||||||||||| | || |||||||||||||| |||||||||||||| || |||||| | | Sbjct 233 AAAACGAGATCAATGTAATGTCATCGTTACCATATCACCCACACGTTTTGAGCTTTTTAG 292 Query 299 GCCATGCCGAGAAAAAACTCATGGTCGTTGAGTACATGCCAAACGAATCGTTATACCAAT 358 | ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| | Sbjct 293 GTCATGCCGAGAAAAAACTCATGGTCGTTGAGTTCATGCCAAACGGATCGTTACACCAGT 352 Query 359 TATTACACGTGTCAACTGATCCTCTTCCCACGTGGCTTAAACGCATCGAAATCGCTCTTC 418 |||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 353 TATTACACGTGTCAGCTGATCCTCTTCCCACTTGGCTTAAACGCATTGAAATCGCTCTTC 412 Query 419 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACACGGTATCATCCACCGCGATATCAAAT 478 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 413 AGATCGCGAGTGCGGTTCACTTCCTCCATGAACAAGGTATCATCCACCGTGATATCAAAT 472 Query 479 CGGAAAATATTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 538 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 473 CGGAAAACGTTTTGTTTGATTCGAATTGGGAAGCGAAGCTTGCTGACTTCGGACTCGCCG 532 Query 539 TTGATTTTGGAGGTGATAAGAAGATAAGACCGGCTCCGGCGGGAACTATTGGATACTTAG 598 ||||||||||| ||| |||||| ||||| || ||||||||||||||||||||||||| Sbjct 533 TTGATTTTGGACGTG---AGAAGACGAGACCAGCGCCGGCGGGAACTATTGGATACTTAG 589 Query 599 ATCCGTGTTACACGTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 658 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590 ATCCGTGTTATACTTTACCGGAGAATCTGAGTATGAAGACTGATGTTTATAGTTACGGTG 649 Query 659 TCGTTTTGTTGGAGATTGTTAGTTGTAGAAAAGCTATTGACGTCTCTCGTTCGCCGGCGT 718 | |||||||||||||||||||| ||||| |||||||| || ||||||||||||||| | | Sbjct 650 TTGTTTTGTTGGAGATTGTTAGCTGTAGGAAAGCTATCGAGGTCTCTCGTTCGCCGTCTT 709 Query 719 CGATAGTAGACTGGGCGGTTCCGTTGATTAAGGAAGGGAGGATCGGAGAAATATGCGGCG 778 ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 710 CGATAGTGGACTGGGCGGTTCCGTTGATTAAAGAAGGGAGGATCGGAGAAATCTGCGGCG 769 Query 779 GAGGAGGAGGAGGATCGGGTGTTTTCCGGGGAATGAGTCTACGGTTGTTGCGTATGGCGG 838 |||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 770 GAGGAGGAGGAGGATCGGCTGTTTTCCGGGGAATGAATTTACGGTTGTTAAGTATGGCGG 829 Query 839 CGAGATGCGTTTCATCTGACGTGGAATCACGACCGTGTTTCGGGGAGATCACGGCGGAGA 898 ||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| Sbjct 830 CGAGATGCGTTTCTTCCGACGTGGAATCACGTCCGTGTTTCGGGGAGATCACGGCGGAGA 889 Query 899 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATGAGCGTTTTGCGTC 958 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 890 TAGTGGCGTGTTTGGCGGAACCGTTGAAGAGTTTGCCGTTATGGATTAGCGTTTTGCGTC 949 Query 959 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 950 GGGTTGTTAAACTGAAACGGCGGAAAAAACGGTTGAGAGAAACGCTGACGTGGCCGGGTC 1009 Query 1019 AAACTTGCCGCGTTTGGTGAGAGTTTATGAATTGC-GGGTCAAATATCGAATCGGGTCGG 1077 ||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||| Sbjct 1010 AAACTTGCCGCGTTTGGTGAGAGTTAATGAA--GCCGGGTCAAATGTCGAATCGGGTCGG 1067 Query 1078 GTTA-AAAGGTTGGGTTGGTTACAAAAAGAAAACAACCATCTAAATCCAAGCAGAAGAAC 1136 ||| ||||| ||| || ||||||| | || | | ||| |||||||||||||||||| Sbjct 1068 GTTGGAAAGGATGG-TT----ACAAAAA-ACAA-A-C-ATCCAAATCCAAGCAGAAGAAC 1118 Query 1137 AATCGCTAAACAGAATGATATATTTATCGTTTGTAGTAAGTAGCATTTAATTTTGTTATC 1196 | |||| ||| | | || || | | || |||||||||||||||||||| Sbjct 1119 ACTCGCGAAA-A-A--GA-AT-------G-----A-TA--TAGCATTTAATTTTGTTATC 1158 Query 1197 CCTTCGGATAATGTAACCATTAATCCATTACTAATTCAGTCGTGGTCGATTGAT 1250 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 1159 CCTTCGGATAATGTAACCATTAATCCATTATTAATTCAGTCGTGATCGATTGAT 1212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46776819159 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5