BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23190.1
Length=2173
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941840 jgi|Araly1|941840|scaffold_602384.1 2732 0.0
Ahg892752 jgi|Araly1|892752|Al_scaffold_0006_748 1123 0.0
> Ahg941840 jgi|Araly1|941840|scaffold_602384.1
Length=1721
Score = 2732 bits (1479), Expect = 0.0
Identities = 1643/1724 (95%), Gaps = 4/1724 (0%)
Strand=Plus/Plus
Query 136 ctctctcttctcttTGTCACAATGAATTTCAATTCTTCTTACAATCTCACTTTCAATGAC 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTTCTCTTTGTCACAATGAATTTCAATTCTTCTTACAATCTCACTTTCAATGAC 60
Query 196 GTTTTCTTCTCTTCTTCTTCCTCCAGTGACCCTCTGGTTTCACGGAGGCTGTTTCTCTTG 255
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 61 GTTTTCTTCTCTTCATCTTCCTCCGGTGACCCTCTGGTTTCATGGAGGCTGTTTCTCTTG 120
Query 256 AGAGATGTTCAGATTCTTGAGCTCCTTATTGCAATTTTCGTCTTTGTCGCAATACATGCC 315
| |||||||||| ||||||||||||||||||| |||| ||||||||| | |||||| ||
Sbjct 121 AAAGATGTTCAGGTTCTTGAGCTCCTTATTGCCCTTTTTGTCTTTGTCACTATACATTCC 180
Query 316 TTGCGTCAGAAGAAATACCAAGGTCTTCCCGTGTGGCCGTTTCTTGGGATGCTTCCTTCT 375
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 TTGCGTCAGAAGAAATACCAAGGTCTTCCTGTGTGGCCGTTTCTCGGGATGCTTCCTTCT 240
Query 376 CTAGCTTTTGGCCTCAGAGGAAACATATACGAGTGGCTATCCGATGTTCTATGTCTCCAG 435
||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CTAGCTTTTGGCCTCCGAGGCAACATATACGAGTGGCTATCCGATGTTCTCTGTCTCCAA 300
Query 436 AACGGAACTTTCCAATTCAGAGGTCCCTGGTTTAGCAGCCTCAACAGCACTATCACTTGT 495
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 301 AACGGTACTTTCCAATTCAGAGGTCCCTGGTTTAGCAGCCTCAACAGCACTATTACCTGC 360
Query 496 GACCCAAGAAACGTTGAGCATCTCCTTAAGAACCGGTTT-TCTGTCTTCCCTAAAGGTTC 554
|||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 361 GACCCAAGAAACGTTGAGCATCTCCTCAAGAACC-GTTTCTCTGTCTTCCCTAAAGGTTC 419
Query 555 TTACTTTCGAGACAATCTCCGAGACCTCCTAGGAGATGGAATATTCAACGCGGATGATGA 614
|||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 420 TTACTTCCGAGACAATCTCCGAGACCTCCTAGGCGACGGAATATTCAATGCGGATGATGA 479
Query 615 AACTTGGCAGAGGCAGAGGAAAACAGCGAGCATTGAGTTTCATTCAGCCAAATTCAGACA 674
||| |||||||| || |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 480 AACATGGCAGAGACAAAGGAAAACCGCGAGCATCGAGTTTCACTCAGCCAAATTCAGACA 539
Query 675 ATTAACCACTCAATCTTTGTTTGAGCTCGTGCACAAGAGGCTCTTACCTGTTCTTGAGAC 734
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 ATTAACCACTCAATCTTTGTTTGAGCTCGTGCACAAGAGACTCTTACCTGTTCTTGAGAC 599
Query 735 ATCGGTTAAGAGCTCATCTCCTATCGATCTACAAGACGTCTTGTTGAGGCTAACGTTTGA 794
||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 600 ATCGGTTAAGAGCTCGTCTCCTATAGATCTACAAGACGTCTTGTTGAGGCTAACATTCGA 659
Query 795 TAACGTATGTATGATTGCTTTTGGAGTCGATCCAGGATGTCTCGGTCCAGATCAACCAGT 854
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 660 TAATGTATGTATGATTGCTTTTGGAGTCGATCCAGGATGTCTTGGTCCTGATCAACCCGT 719
Query 855 GATTCCTTTTGCGAAAGCCTTTGAGGATGCGACTGAAGCTGCGGTTGTGAGATTCGTCAT 914
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 720 GATTCCCTTTGCGAAAGCCTTTGAGGATGCGACTGAAGCAGCGGTTGTGAGATTCGTCAT 779
Query 915 GCCTACTTGCGTGTGGAAGTTCATGAGGTATCTTGATATAGGAACAGAGAAGAAGCTTAA 974
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||
Sbjct 780 GCCTACTTGCGTGTGGAAGTTCATGAGGTATCTTAATTTCGGAACAGAGAAGAAGCTAAA 839
Query 975 GGAATCAATAAAGGGTGTGGATGATTTCGCTGATGAAGTTATCAGGACGAGGAAGAAAGA 1034
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 840 GGAATCTATAAAGGGTGTGGATGATTTCGCCGAAGAAGTTATCAGGACGAGGAAGAAAGA 899
Query 1035 ACTGTCTCTTGAGGGCGAAACTACAAAAAGATCGGATCTCTTAACTGTGTTTATGGGTCT 1094
|| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 900 GCTCTCTCTTGAAGGTGAAACTACAAAGAGATCGGATCTCTTAACTGTGTTTATGGGTCT 959
Query 1095 GAGAGATGAGAAGGGAGAGAGTTTTTCAGACAAGTTTCTTCGTGATATCTGTGTGAACTT 1154
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAGAGATGAGAAAGGAGAGAGTTTTTCAGACAAGTTTCTTCGTGATATCTGTGTGAACTT 1019
Query 1155 CATACTTGCTGGGAGAGATACTTCTTCTGTGGCTTTGAGCTGGTTTTTCTGGTTGCTAGA 1214
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1020 CATACTTGCTGGGAGAGATACTTCTTCGGTGGCTCTGAGCTGGTTTTTCTGGTTGCTAGA 1079
Query 1215 GAAGAACCCAGAGGTCGAAGAGAAGATCATGGTGGAGATGTGTAAGATTCTGAGGCAGAG 1274
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAGAATCCAGAGGTCGAAGAGAAGATCATGGTGGAGATGTGTAAGATTCTGAGGCAGAG 1139
Query 1275 AGATGACCATGGAAATGCAGAGAAGAGTGATTATGAACCTGTGTTTGGACCAGAAGAGAT 1334
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 AGATGACCATGGAAATGCAGAGAAGAGAGATTATGAACCTGTGTTTGGACCAGAAGAGAT 1199
Query 1335 CAAGAAGATGGATTATCTACAAGCTGCTTTGTCTGAAGCTCTTAGATTGTATCCTTCAGT 1394
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1200 TAAGAAGATGGATTATCTTCAAGCTGCTTTGTCTGAAGCTCTCAGATTGTATCCTTCAGT 1259
Query 1395 TCCCGTGGATCACAAAGAGGTTCAAGAAGACGACGTATTTCCTGATGGAACTATGTTGAA 1454
||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1260 TCCTGTGGACCACAAAGAGGTTCAAGAAGACGACGTATTTCCTGATGGAACAATATTGAA 1319
Query 1455 GAAGGGAGACAAAGTTATATACGCGATTTACGCAATGGGTCGTATGGAAGCTATTTGGGG 1514
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1320 GAAGGGAGAGAAAGTTATATACGTGATTTACGCAATGGGTCGGATGGAAGCTATTTGGGG 1379
Query 1515 AAAAGACTGTCTTGAGTTTAGGCCAGAGAGGTGGCTAAGAGACGGACGGTTCATGAGTGA 1574
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AAAAGACTGTCGTGAGTTTAGGCCAGAGAGGTGGCTAAGAGACGGACGGTTCATGAGTGA 1439
Query 1575 GTCGGCCTACAAATTCACAGCCTTTAACGGTGGTCCACGCCTTTGTCTTGGCAAAGATTT 1634
||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1440 GTCGGCCTATAAATTCACGGCCTTTAACGGCGGTCCACGCCTTTGTCTAGGCAAAGATTT 1499
Query 1635 TGCCTATTATCAGATGAAATCTACGGCGGCCGCAATAGTTTATCGGTACAAGGTGAAGGT 1694
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1500 TGCCTATTATCAGATGAAATCTACGGCGGCCGCAATAGTTTACCGGTACAAGGTGAAGGT 1559
Query 1695 GGTGAATGGTCACAAGGTGGAGCCGAAGTTGGCACTCACAATGTACATGAAACATGGTTT 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGTGAATGGTCACAAGGTGGAGCCGAAGTTGGCACTCACAATGTACATGAAACATGGTTT 1619
Query 1755 GATGGTGAACTTGATCAATAGGAGTGTCTCCGAGATAGATCAATACTATGCCAAGTCTTT 1814
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GATGGTGAATTTGATCAATAGGAGTGTCTCCGAGATAGATCAATACTATGCCAAGTCTTT 1679
Query 1815 TGATGAGGGTTATATTAATTAGTGTTTTTAATGTTTTGAAGATT 1858
|||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1680 TGATGAGGGTTATATTAATTAGTGTTTT-AATGTTTTGA-GATT 1721
> Ahg892752 jgi|Araly1|892752|Al_scaffold_0006_748
Length=1659
Score = 1123 bits (608), Expect = 0.0
Identities = 1332/1676 (79%), Gaps = 72/1676 (4%)
Strand=Plus/Plus
Query 168 TTCTTCTTACAATCTCACTTTC-AATGACGTTTTC--TT-CTCTTCTTCTTCCTCCAGTG 223
||||||||| |||||||| | || ||||||| || |||||||| || | || |
Sbjct 15 TTCTTCTTATAATCTCAC-GGCTGCTGCCGTTTTCGTTTCCTCTTCTTGTTTCGGAAGCG 73
Query 224 AC---CCTCTGGTTTC-ACGGAGGCTGTTTCTCTTGAGAGATGTTCAGATTCTTGAGCTC 279
|| ||||||||| | | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 74 ACGAGCCTCTGGTTCCTA-GGAGGCTGTTTTTCTTGAGAGATGTTCAGATTCTTGAGCTC 132
Query 280 CTTATTGCAATTTTCGTCTTTGTCG-CAATACATGCCTTGCGTCAGAAGAAATACCAAGG 338
||||||| |||| || ||||| | |||||||| ||||||| ||||||||| | |||||
Sbjct 133 TTTATTGCCCTTTTAGTGTTTGT-GACAATACATTCCTTGCGCCAGAAGAAACATCAAGG 191
Query 339 TCTTCCCGTGTGGCCGTTTCTTGGGATGCTTCCTTCTC-TAGCTTTTGGC-CTCAGAGGA 396
| ||||| |||||||||||||| |||||||| ||| | | ||| || || || |
Sbjct 192 GATGCCCGTTTGGCCGTTTCTTGGCATGCTTCC--CTCGTTGATTTCCGCGTTCCGAAGC 249
Query 397 AACATATACGAGTGGCTATCCGATGTTCTATGTC-TCCAGAACGGAACTTTCCAATTCAG 455
||||||||||| ||| |||| || ||||| || ||| ||||| || |||| || ||
Sbjct 250 AACATATACGAATGGTTATCTGAGGTTCT-CATCAGCCAAAACGGGACATTCCGGTTTAG 308
Query 456 AGGTCCCTGGTTTAGCAGCCTCAACAGCACTATCACTTGTGACCCAAGAAACGTTGAGCA 515
|||||| |||||||||| ||||||| || | | || || ||||||||||||||||||||
Sbjct 309 AGGTCCTTGGTTTAGCACCCTCAACTGCGTTGTTACCTGCGACCCAAGAAACGTTGAGCA 368
Query 516 TCTCCTTAAGAACCGGTTT-TCTGTCT-TCCCTAAAGGTTCTTACTTTC--GAGACAATC 571
||| || ||| ||| |||| ||| ||| | ||||| ||||||||||| | ||||| |
Sbjct 369 TCTTCTCAAG-ACCCGTTTCTCTATCTAT-CCTAAGGGTTCTTACTTCCGTGAGACCA-- 424
Query 572 TCCGAGACCTCCTAGGAGATGGAATATTCAACGCGGATGATGAAACTTGGC-AGAGGCAG 630
| ||||| || || ||||| || || ||||| | ||||| ||||| |||| | | ||
Sbjct 425 TGCGAGATCTACTCGGAGACGGGATTTTCAATACCGATGAAGAAACGTGGCAACA-ACAA 483
Query 631 AGGAAAACAGCGAGCATTGAGTTTCATTCAGCCAAATTCAGACAATTAACCACTCAATCT 690
||||||||||| || | ||||| ||||| || |||||||||| ||||||| ||||||
Sbjct 484 AGGAAAACAGCAAGTGTCGAGTTCCATTCGGCTAAATTCAGACTGTTAACCAGTCAATCA 543
Query 691 TTGTTTGAGCTCGTGCACAAGAGGCTCTTACCTGTTCTTGAGACATCGGTTAAGAGCTCA 750
||| || || ||||| || | || || || |||| | ||| | | || | | ||
Sbjct 544 TTGCACGAACTTGTGCATAATCGACTTTTGCCGGTTC-T-AGA-AAC--TTCCG-G--CA 595
Query 751 TCTCCTATCGATCTACAAGACGTCTTGTTGAGGCTAACGTTTGATAACGTATGTATGATT 810
||||||||| |||||| | ||||| || |||||||| || || ||||| ||||||
Sbjct 596 ----ATATCGATCTTCAAGACATTTTGTTAAGACTAACGTTCGACAATGTATGCATGATT 651
Query 811 GCTTTTGGAGTCGATCCAGGATGTCTCGGTCCAGATCAACCAGTGATTCCTTTTGCGAAA 870
|||||||| ||||||||||| ||||| ||||| | | ||| | ||||||||||| |||
Sbjct 652 GCTTTTGGGGTCGATCCAGGCTGTCTTAGTCCAAAACTACCCGAAATTCCTTTTGCAAAA 711
Query 871 GCCTTTGAGGATGCGACTGAAGCTGCGGTTGTGAGATTCGTCATGCCT-ACTTGCGTGTG 929
||||| |||||||| || ||||| | ||||||||||| || |||||| | || ||||||
Sbjct 712 GCCTTCGAGGATGCAACAGAAGCAACAGTTGTGAGATTTGTGATGCCTAAATT-CGTGTG 770
Query 930 GAAGTTCATGAGGTATCTTGATATAGGAACAGAGAAGAAGCTTAAGGAATCAATAAAGGG 989
|||| ||||||||| |||| || ||||||| ||||||||||| ||| |||||||||| ||
Sbjct 771 GAAGCTCATGAGGTCTCTTAATTTAGGAACGGAGAAGAAGCTAAAGAAATCAATAAAAGG 830
Query 990 TGTGGATGATTTCGCTGATGAAGTTATCAGGACGAGGAAGAAAGA-ACTGTCTCTTGAGG 1048
|||||||||||||||||| ||||| ||| ||| |||||||||||| | ||||||| || |
Sbjct 831 TGTGGATGATTTCGCTGAAGAAGTAATCCGGAGGAGGAAGAAAGAGA-TGTCTCTAGA-G 888
Query 1049 GC-GAAA-CTACAAAAAGATCGGATCTCTTAACTGTGTTTATGGGTCTGA-GAGATGAGA 1105
|| |||| || | || ||| | |||||||| ||| | ||||||||||| | |||| | |
Sbjct 889 GCTGAAATCT-CGAAGAGACCTGATCTCTTGACTATCTTTATGGGTCT-ACGAGACCAAA 946
Query 1106 AGGGAGAGAGTTTTTCAGACAAGTTTCTT-CGTGATATCTGTGTGAACTTCATACTTGCT 1164
| ||| ||| |||||||| |||||| || || ||||| |||||||||||||||||||||
Sbjct 947 ATGGACAGAAATTTTCAGATAAGTTT-TTGCGCGATATTTGTGTGAACTTCATACTTGCT 1005
Query 1165 GGGAGAGATACTTCTTCTGTGGCTTTGAGCTGGTTTTTCTGGTTGCTAGAGAAGAACCCA 1224
|||||||| ||||| || |||||||| ||||||||||||||||| | |||||||| ||
Sbjct 1006 GGGAGAGACACTTCCTCCGTGGCTTTAAGCTGGTTTTTCTGGTTAATCGAGAAGAATCCG 1065
Query 1225 GAGGTCGAAGAGAAGATCATGGTGGAGA-TGTGTAAGATTCT-GAGGCAGAGAGATGACC 1282
|| || || ||||| |||||| ||| || | || |||||||| ||| ||||||||||| |
Sbjct 1066 GAAGTGGAGGAGAAAATCATGATGG-GAATTTGCAAGATTCTTGAG-CAGAGAGATGATC 1123
Query 1283 ATGGAAATGCAGAGAAGAG--TG-ATTATGAACCTGTGTTTGGACCAGAAGAGATCAAGA 1339
| ||| ||||| |||||| || | ||||| |||||||| ||||||||||||||||||
Sbjct 1124 AGGGAGATGCAAAGAAGAACATGGAATATGAGCCTGTGTTCAGACCAGAAGAGATCAAGA 1183
Query 1340 AGATGGATTATCTACAAGCTGCTTTGTCTGA-AGCTCTTAGATTGTATCCTTCAGTTCCC 1398
| ||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||
Sbjct 1184 AAATGGATTATCTACAAGCTGCTTTGTCTGAGA-CTCTCAGATTGTATCCTTCTGTTCCA 1242
Query 1399 GTGGATCACAAAGAGGTTCAAGAAGACGACGTATTTCCTGATGGAACTATGTTGAAGAAG 1458
|| |||||||||||||| | |||||||| ||||||| ||||| || | || || ||
Sbjct 1243 GTCGATCACAAAGAGGTACTTGAAGACGATATATTTCCAGATGGGACCAAATTAAAAAAA 1302
Query 1459 GGAGACAAAGTTATATACGCGATTTACGCAATGGGTCGTATGGAAGCTATTTGGGGAAAA 1518
||||| |||||||||||||| || ||||| ||||| || |||||| | |||||||| |||
Sbjct 1303 GGAGAAAAAGTTATATACGCAATATACGCCATGGGACGCATGGAAACAATTTGGGGGAAA 1362
Query 1519 GACTGTCTTGAGTTTAGGCCAGAGAGGTGGCTAAGAGACGGACGGTTCATGAGTGAGTCG 1578
||||||| |||||| | ||||| |||||| ||||||| || || | |||||||||||||
Sbjct 1363 GACTGTCGTGAGTTCAAACCAGAAAGGTGGTTAAGAGATGGCCGATACATGAGTGAGTCG 1422
Query 1579 GCCTACAAATTCACAGCCTTTAACGGTGGTCCACGCCTTTGTCTTGGCAAAGATTTTGCC 1638
||||| || || || ||||| || || ||||| || || ||||| ||||| ||||||||
Sbjct 1423 GCCTATAAGTTTACGGCCTTCAATGGCGGTCCTCGGCTATGTCTAGGCAAGGATTTTGCG 1482
Query 1639 TATTATCAGATGAAATCTACGGCGGCCGCAAT-AGTTTATCGGTACAAGGTGAAGGTGG- 1696
|||||||| |||| || | |||||||| || | | || || || | ||| | ||| |
Sbjct 1483 TATTATCAAATGAGATATGTTGCGGCCGCGATTA-TCTACCGATATAGGGTCAGGGTTGA 1541
Query 1697 TGA-ATGG----TCACAAGGTGGAGCCGAAGTTGGCACTCACAATGTACATGAAACATGG 1751
||| | || ||| ||||| ||||| ||| |||| || || ||||||||||| |||||
Sbjct 1542 TGATAAGGGAGGTCATAAGGTTGAGCCAAAGATGGCTCTAACTATGTACATGAAGCATGG 1601
Query 1752 TTTGATGGTGAACT-TGATCAATAGGAGTGTCTCCGAGATAGATCAATACTA-TGC 1805
|||| |||||| | || |||| ||||||||||| |||||||| || ||||| |||
Sbjct 1602 ATTGAAGGTGAA-TATGGTCAAGAGGAGTGTCTCTGAGATAGACCACTACTACTGC 1656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81779756015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5