BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23200.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489175 jgi|Araly1|489175|fgenesh2_kg.6__2309__AT5G23200.1 2104 0.0
> Ahg489175 jgi|Araly1|489175|fgenesh2_kg.6__2309__AT5G23200.1
Length=1468
Score = 2104 bits (1139), Expect = 0.0
Identities = 1363/1465 (93%), Gaps = 39/1465 (3%)
Strand=Plus/Plus
Query 53 GATTCCTGATGTTCTTCAGTAATTTCTTGCAATCCTTATAAACAAAGAGCGTGGAGAATC 112
||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 33 GATTCCTGATGTTCTACAGTAATTTCTTGCAATCCTTGT-AACAAAGAGGGTGGAGAATC 91
Query 113 GTTTC-AGAGGAAAGAAAACTAAAAATGGCGACTCTTTTCAACAAATTTCAGCAGGCTGT 171
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 GTTTCTA-AGGAAAGAAAACTAAAAATGGCGACTCTTTTCAACAAATTTCAGCAGGCTGT 150
Query 172 TGGAGTTCTTGCCAAGAGTACCACATTTGCTAAGAACCCAAGGCAACTGCAGTTTGAAGC 231
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 151 TGGAGTTCTTGCCAAGAGTACCACATTTGCTAAGAACCCAAGGCAACTCCAATTTGAAGC 210
Query 232 AGACGTTAACAAACTCTTTATGTATACAAGCTATAACCGGTTGGGACGAGAAGCTGAGGA 291
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 211 AGACGTTAACAAACTGTTTATGTATACCAGCTATAATCGGTTGGGACGAGAAGCTGAGGA 270
Query 292 GACTGATGCAGAGGAGATCATTGAGATGGCTGGTAAAGCCACTTTATCTGAGCAGCAGAA 351
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 GACGGATGCAGAGGAGATCATTGAGATGGCTGGTAAAGCCACTTTATCTGAGCAGCAGAA 330
Query 352 GCAAGTTCAAGAGAACATTCACTACCAAGTTGAAAAATTCTGCTCTTTGATGGATGGAAT 411
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 331 GCAAGTTCAAGAGAACATTCACTACCAAGTTGAAAACTTCTGCTCTTTGATGGATGGAAT 390
Query 412 CCTTCTTCCTGATGTTAGGAGGAACGAGTCGGGGTCACAATCAACAAGCCCTCGTCCTCC 471
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| | |||
Sbjct 391 CCTTCTTCCTGATGTTAGGAAGAACGAGTCGGGTTCACAATCAACAAGCCCTC--C-TCC 447
Query 472 TCGTAGAAGTGGTCTTACTTTCGCCATTGGTAGTAATAATGCTTTTCCA-CATGCAGAT- 529
||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 448 TCGTAGAAGTGGTCTTACTTTCGCCATTGGTAGTAATAATGCTTTTCCAGC-TGTAGATA 506
Query 530 CAGCCCCTTGTTCCCGAGACAAAGCCTTTGAAACTCAATGACGTCTCACAGAGATTAATG 589
| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 507 C-GCCCCTTGTTCCGGAGACAAAGCCTTTGAAACTCAATGAGGTCTCACAGAGATTAATG 565
Query 590 GATCAAATGGGTTACACCCTCGAGACCAAACCGTCTGTAATACCTCACAAAGACGCTGGT 649
||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 566 GATCAAATGGGCTATACCCTCGAGATCAAACCATCTGTAATACCTCACAAAGACGCTGGT 625
Query 650 CAAGGTTGTTTTATCAAAGGCG-AGGCAGATGTTGGAACCGTCTTAGCCTTTTACCCTGG 708
||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 626 CAAGGTTGTTTCATCAAAGGCGTAG-CAGATGTTGGAACCGTCTTAGCCTTTTACCCTGG 684
Query 709 AGTTATTTACTCTCCTGCTTTCTACAAGTACATACCCGGGTACCCGAAGGTTGATTCACA 768
||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 685 AGTAATTTACTCTCCTGCTTTCTACAGGTACATTCCCGGGTACCCGAAGGTTGATTCACA 744
Query 769 GAACTCATATCTCATCACCAGGTATGATGGGACTGTAATAAATGCTCAACCTTGGGGTCT 828
|||||| || |||||||| ||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 745 GAACTCGTACCTCATCACGAGGTATGATGGAACTGTGATAAACGCTCAGCCTTGGGGTCT 804
Query 829 TGGGGGAGAATCAAGGGAAGCATGGAACGGGTCCTACACACCTGCGG-TCAAAGCAAACA 887
|||||||||||| ||||||| |||||| ||||||||||||||||||| | ||||||||||
Sbjct 805 TGGGGGAGAATCTAGGGAAGTATGGAATGGGTCCTACACACCTGCGGCT-AAAGCAAACA 863
Query 888 CCAAAACCGCAGAAAACGGGTCAGACAGGTTATGGAAAGCGTTGAGCAAGCCTCTCGAAG 947
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 864 CCAAGGCCGCAGAAAACGGGTCAGACAGGTTATGGAAAGCATTGAGCAAGCCTCTCGAAG 923
Query 948 GTTCGGGTAAAGGAAAAGAGGTTCTTGAGAGGAGAAATCCGTTGGCTTTTGGTCACTTAG 1007
|||| ||||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 924 GTTCAGGTAAAGCAAAAGACGTTCTTGAGAGGAGAAATCCGTTGGCATTTGGTCACTTAG 983
Query 1008 CTAACCACCCAGCGAAAGAGATGACTCCAAACGTTATGATATGTCCTTATGACTTCCCTT 1067
|||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 984 CTAACCACCCGGCAAAAGAAATGACTCCAAACGTTATGATATGTCCCTATGACTTCCCCT 1043
Query 1068 TGATGGCGAAAGATCTGCGGCCTTACATTCCGAATATATCTTTTGGGGATTCTGGAGAAA 1127
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1044 TGATGGCGAAAGATCTGCGACCTTACATCCCGAATATATCTTTTGGGGATTCTGGAGAAA 1103
Query 1128 TAAAGATGAAAAGATTTGGAAGTTTCTGGTTTAAGACAGGGAGTAAAAACGGGTTAGAAG 1187
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1104 TAAAGATGAAGAGATTTGGAAGCTTCTGGTTTAAGACAGGGAGTAAAAACGGGTTAGAAG 1163
Query 1188 CTCCGGTTCTGAAGACACTGGTCTTGGTGGCAACGAGGTCGTTGTGTAATGAGGAACTT- 1246
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1164 CTCCGGTTCTGAAGACACTGGTCTTGGTGGCAACGAGGTCGTTGTGTAATGAGGAA-TTA 1222
Query 1247 TTGCTGAATTACAGGCTGAGCAACTCTAAGAGACGACCAGATTGGTATACTCCGGTTAAC 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TTGCTGAATTACAGGCTGAGCAACTCTAAGAGACGACCAGATTGGTATACTCCGGTTAAC 1282
Query 1307 GAGGAGGAAGATAGGAGAAGATGGAGCTAAATTTCTCTTTTATG-TTTTAATGAAACTTG 1365
|| ||||| ||| | |||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 1283 GAAGAGGAGGATCGAAGAAGATGGAGCTAAACTTCTCTTTTATTATTTTCTTGAAACTTG 1342
Query 1366 AAAGGCTCTGTTTCAAAACATGCTCCTCGGTTTTCTTTAGACTATTAGC-G-G-GACGTC 1422
|||||||||||||||||||||||||||||| ||||||| |||||| ||| | | ||||||
Sbjct 1343 AAAGGCTCTGTTTCAAAACATGCTCCTCGGGTTTCTTTGGACTAT-AGCAGTGCGACGTC 1401
Query 1423 GTTTCGCTGATTGTGTCACtatttttgtttttcgattatttttggaagacattttattct 1482
|||||| | || || |||||| ||||||| |||||||||||||| || |
Sbjct 1402 GTTTCG-T--TT-TG-----------GTTTTT-GATTATTCTTGGAAGACATTTT-TT-T 1443
Query 1483 aatattttatGTTGTTCTGTTGTTA 1507
| | ||||||| |||||||||||||
Sbjct 1444 AGTCTTTTATGGTGTTCTGTTGTTA 1468
Score = 69.4 bits (37), Expect = 7e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1 AGATGCAGTCTTCTTCATCAATGGAGGTTTTTGATTC 37
|||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATGCAGTCTTCTTCATCAATGGAGGTTTTTGATTC 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5