BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23212.1
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941843 jgi|Araly1|941843|scaffold_602387.1 361 1e-99
Ahg894200 jgi|Araly1|894200|Al_scaffold_0006_2196 361 1e-99
> Ahg941843 jgi|Araly1|941843|scaffold_602387.1
Length=268
Score = 361 bits (195), Expect = 1e-99
Identities = 217/228 (95%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1 ATGACATCGATGAAACTTCACATTGTTGCTCTTTGTATTATTGTTTCCTTCCTTGTTAAT 60
|||||||||||||||||||||||| ||||||||| | | || |||||||||||||||| |
Sbjct 21 ATGACATCGATGAAACTTCACATTCTTGCTCTTTTTGTCATCGTTTCCTTCCTTGTTAGT 80
Query 61 GTTCAATCCACTCGAATTATGGATGCTTCCTCAGATTGTGAATTCAAAGGACCGTGTCAT 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 81 GCTCAATCCACTCGAATTATGGATGCTTCCTCAGATTGTGAATTCAAAGGACCATGTCAT 140
Query 121 AAGAAAGAAGATTGCTATGACTCATGTGGAGTGAACAAACCACCGTTTAACAATGCTATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 141 AAGAAAGAAGATTGCTATGACTCATGTGGAGTGAACAAACCACCGTTTAACAATGCTTTG 200
Query 181 TGTGTACCTGGCAGAGATTCGTTTCAATGTTGTTGTATTTTATCGTGA 228
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 201 TGTGTACCAGGCAGAGATTCGTTTCAATGTTGTTGTATTTTATCGTGA 248
> Ahg894200 jgi|Araly1|894200|Al_scaffold_0006_2196
Length=228
Score = 361 bits (195), Expect = 1e-99
Identities = 217/228 (95%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1 ATGACATCGATGAAACTTCACATTGTTGCTCTTTGTATTATTGTTTCCTTCCTTGTTAAT 60
|||||||||||||||||||||||| ||||||||| | | || |||||||||||||||| |
Sbjct 1 ATGACATCGATGAAACTTCACATTCTTGCTCTTTTTGTCATCGTTTCCTTCCTTGTTAGT 60
Query 61 GTTCAATCCACTCGAATTATGGATGCTTCCTCAGATTGTGAATTCAAAGGACCGTGTCAT 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GCTCAATCCACTCGAATTATGGATGCTTCCTCAGATTGTGAATTCAAAGGACCATGTCAT 120
Query 121 AAGAAAGAAGATTGCTATGACTCATGTGGAGTGAACAAACCACCGTTTAACAATGCTATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AAGAAAGAAGATTGCTATGACTCATGTGGAGTGAACAAACCACCGTTTAACAATGCTTTG 180
Query 181 TGTGTACCTGGCAGAGATTCGTTTCAATGTTGTTGTATTTTATCGTGA 228
|||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGTACCAGGCAGAGATTCGTTTCAATGTTGTTGTATTTTATCGTGA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7828593505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5