BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23230.1
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489181 jgi|Araly1|489181|fgenesh2_kg.6__2315__AT5G23230.1 821 0.0
> Ahg489181 jgi|Araly1|489181|fgenesh2_kg.6__2315__AT5G23230.1
Length=617
Score = 821 bits (444), Expect = 0.0
Identities = 565/623 (91%), Gaps = 9/623 (1%)
Strand=Plus/Plus
Query 11 ATGGCTTCTTCATCATCGAGAACGTACGAGACACGAAAGCGAGAGCCAAATCCTAAAATC 70
|||||||| |||||| |||||| ||||||||||||||||||||| |||||||| |||| |
Sbjct 1 ATGGCTTCGTCATCAACGAGAAAGTACGAGACACGAAAGCGAGATCCAAATCCAAAAACC 60
Query 71 GCAGCTCTTCTCGTCATCGATATGCAGAATCACTTCTACTCTATGGCTGAACCAATCCTC 130
|||||||||||||| |||||||||||||||||||||| ||| ||||| |||| |||||
Sbjct 61 GCAGCTCTTCTCGTTATCGATATGCAGAATCACTTCTCCTCCATGGCCAAACCCATCCT- 119
Query 131 CAA-AACGCTCTCACCACCATCGACATCTGCCGACGCGCTTCAATCCCCGTATTCTTCAC 189
||| |||| |||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct 120 CAACAACGTTCTCACCACCATCGACATCTGCCGACGCGCCTCAATCCCCATATTTTTCAC 179
Query 190 GCGCCACAACCACAAATCCCCAACCGACCACGGCATGCTCGGAGAGTGGTGGAACGGCGA 249
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 180 GCGCCACAACCACAAATCCCCAACCGATCACGGCATGCTCGGCGAGTGGTGGAACGGCGA 239
Query 250 TCTAATCCTCGACGGAACCACTGATTCCGAAATCATCCCGGAAATCAATCGCCAGGTCAC 309
||| ||||||||||||||||| |||||||||||||||||||| ||| | | | ||||
Sbjct 240 TCTCATCCTCGACGGAACCACCGATTCCGAAATCATCCCGGAGATCCA--GATA-CTCAC 296
Query 310 CGGACCAGACGAAATCGTGGAGAAGAGCACGTACAGTGCGTTTAACAACACGCACCTTCA 369
| ||||||||| || |||||||||||||||||||| |||||||||||||||| ||| ||
Sbjct 297 CAAACCAGACGAGATGGTGGAGAAGAGCACGTACAGCGCGTTTAACAACACGCGCCTCCA 356
Query 370 GGAGAAGCTGGACAAGATCGGAGTGAAGGAGGTGATCGTTATCGGAGTGATGACGAACCT 429
|| ||||||||||||||||| || ||||| |||||||| || |||||||||||||||||
Sbjct 357 TGAAAAGCTGGACAAGATCGGGGTTAAGGAAGTGATCGTGATTGGAGTGATGACGAACCT 416
Query 430 ATGCTGTGAGACGACGGCGCGTGAAGCGTTTGT-AAAGGGGTTTAGGGtttttttCTCGA 488
|||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct 417 GTGCTGTGAGACGACGGCGCGTGAAGCGTTTGTGAAA-GGGTTCAGGGTTTTTTTCTCGA 475
Query 489 CGGACGCGACTGCGACGGTTAATGAAGAGCTTCACGAGGCTACTCTAATGAATCTCGCGT 548
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 476 CGGACGCGACTGCGACGGTTAATGAAGAGCTTCACGAGGCTACACTAATGAATCTCGCTT 535
Query 549 ATGGCTTTGCTTATCTCGTCGATTGCGATAGACTCCGGCGAGGTCTACTCAGTAGTTAAT 608
||||||| |||||||||||||| |||||||| |||||||||||||||||||||| | |||
Sbjct 536 ATGGCTTCGCTTATCTCGTCGACTGCGATAGTCTCCGGCGAGGTCTACTCAGTAATAAAT 595
Query 609 AAAAGATGACT-ACACCTTTTGT 630
||| ||| ||| |||||||||||
Sbjct 596 AAATGAT-ACTTACACCTTTTGT 617
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26876656485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5