BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23230.1 Length=730 Score E Sequences producing significant alignments: (Bits) Value Ahg489181 jgi|Araly1|489181|fgenesh2_kg.6__2315__AT5G23230.1 821 0.0 > Ahg489181 jgi|Araly1|489181|fgenesh2_kg.6__2315__AT5G23230.1 Length=617 Score = 821 bits (444), Expect = 0.0 Identities = 565/623 (91%), Gaps = 9/623 (1%) Strand=Plus/Plus Query 11 ATGGCTTCTTCATCATCGAGAACGTACGAGACACGAAAGCGAGAGCCAAATCCTAAAATC 70 |||||||| |||||| |||||| ||||||||||||||||||||| |||||||| |||| | Sbjct 1 ATGGCTTCGTCATCAACGAGAAAGTACGAGACACGAAAGCGAGATCCAAATCCAAAAACC 60 Query 71 GCAGCTCTTCTCGTCATCGATATGCAGAATCACTTCTACTCTATGGCTGAACCAATCCTC 130 |||||||||||||| |||||||||||||||||||||| ||| ||||| |||| ||||| Sbjct 61 GCAGCTCTTCTCGTTATCGATATGCAGAATCACTTCTCCTCCATGGCCAAACCCATCCT- 119 Query 131 CAA-AACGCTCTCACCACCATCGACATCTGCCGACGCGCTTCAATCCCCGTATTCTTCAC 189 ||| |||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||| Sbjct 120 CAACAACGTTCTCACCACCATCGACATCTGCCGACGCGCCTCAATCCCCATATTTTTCAC 179 Query 190 GCGCCACAACCACAAATCCCCAACCGACCACGGCATGCTCGGAGAGTGGTGGAACGGCGA 249 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 180 GCGCCACAACCACAAATCCCCAACCGATCACGGCATGCTCGGCGAGTGGTGGAACGGCGA 239 Query 250 TCTAATCCTCGACGGAACCACTGATTCCGAAATCATCCCGGAAATCAATCGCCAGGTCAC 309 ||| ||||||||||||||||| |||||||||||||||||||| ||| | | | |||| Sbjct 240 TCTCATCCTCGACGGAACCACCGATTCCGAAATCATCCCGGAGATCCA--GATA-CTCAC 296 Query 310 CGGACCAGACGAAATCGTGGAGAAGAGCACGTACAGTGCGTTTAACAACACGCACCTTCA 369 | ||||||||| || |||||||||||||||||||| |||||||||||||||| ||| || Sbjct 297 CAAACCAGACGAGATGGTGGAGAAGAGCACGTACAGCGCGTTTAACAACACGCGCCTCCA 356 Query 370 GGAGAAGCTGGACAAGATCGGAGTGAAGGAGGTGATCGTTATCGGAGTGATGACGAACCT 429 || ||||||||||||||||| || ||||| |||||||| || ||||||||||||||||| Sbjct 357 TGAAAAGCTGGACAAGATCGGGGTTAAGGAAGTGATCGTGATTGGAGTGATGACGAACCT 416 Query 430 ATGCTGTGAGACGACGGCGCGTGAAGCGTTTGT-AAAGGGGTTTAGGGtttttttCTCGA 488 |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| Sbjct 417 GTGCTGTGAGACGACGGCGCGTGAAGCGTTTGTGAAA-GGGTTCAGGGTTTTTTTCTCGA 475 Query 489 CGGACGCGACTGCGACGGTTAATGAAGAGCTTCACGAGGCTACTCTAATGAATCTCGCGT 548 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 476 CGGACGCGACTGCGACGGTTAATGAAGAGCTTCACGAGGCTACACTAATGAATCTCGCTT 535 Query 549 ATGGCTTTGCTTATCTCGTCGATTGCGATAGACTCCGGCGAGGTCTACTCAGTAGTTAAT 608 ||||||| |||||||||||||| |||||||| |||||||||||||||||||||| | ||| Sbjct 536 ATGGCTTCGCTTATCTCGTCGACTGCGATAGTCTCCGGCGAGGTCTACTCAGTAATAAAT 595 Query 609 AAAAGATGACT-ACACCTTTTGT 630 ||| ||| ||| ||||||||||| Sbjct 596 AAATGAT-ACTTACACCTTTTGT 617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26876656485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5