BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23240.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489182 jgi|Araly1|489182|fgenesh2_kg.6__2316__AT5G23240.1 2161 0.0
> Ahg489182 jgi|Araly1|489182|fgenesh2_kg.6__2316__AT5G23240.1
Length=1642
Score = 2161 bits (1170), Expect = 0.0
Identities = 1430/1552 (92%), Gaps = 31/1552 (2%)
Strand=Plus/Plus
Query 49 tataactcaatttggaacttt-tat-t-CGTCCCAAATAAAATATCTTTCCAAGAGAGAT 105
||||||||||||||||||||| | | | |||||||||| |||||||||||||||||||||
Sbjct 28 TATAACTCAATTTGGAACTTTCTTTGTCCGTCCCAAATTAAATATCTTTCCAAGAGAGAT 87
Query 106 GGAAAAATAGCTTCATATAGAGATATTTTCAACAACTTGTCCCTCTCTA-AAC-TCATCC 163
|||||||||||||| || ||||||||||| | || | || | ||| | |||
Sbjct 88 GGAAAAATAGCTTCCTACAGAGATATTTT-------TGGT-TTTTTCAACAACTTGTTCC 139
Query 164 ACCTTCCAAAACAGAGAAGGGGAAAATATGACACCGGCTATTTTTTCTCCGACGACTCTT 223
| | | ||||||||| ||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 140 -TC-T-C-TAACAGAGAAAGGGAAAAAATGTCACCGGCTATTTTTACTCCGACGACTCTT 195
Query 224 CCTCCATCAACTG---CTACATGGCCATGTTCAACATCTCAGAAGCTCATCACCGTTAGA 280
||||| ||||||| |||||||||||||| | ||||||||||||||||||||| |||||
Sbjct 196 CCTCCGTCAACTGCTACTACATGGCCATGTACCACATCTCAGAAGCTCATCACCATTAGA 255
Query 281 TCACCACTCAAGTTCAAGTGTAGAG-CA--AC-T-T-CATCATCATCGTCTATCACTGAC 334
|||||||||||| |||||||||||| || | | | ||||||| || |||||||| |||
Sbjct 256 TCACCACTCAAGCTCAAGTGTAGAGCCACTTCTTCTACATCATCTTCATCTATCACAGAC 315
Query 335 TTTGATCTTTATGACCTCTTGGGTATTGATCGAAGTTCTGATAAGTCTCAGATCAAATCA 394
|||||||| || |||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 316 TTTGATCTCTACGACCTCTTGGGTGTTGATCGGAGCTCTGATAAGTCTCAGATCAAATCA 375
Query 395 GCCTATCGTGCGTTGCAGAAACGATGTCATCCAGATATCGCAGGAGATCCCGGTCATGAT 454
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 376 GCCTATCGTGCGTTGCAAAAACGGTGTCATCCAGATATCGCAGGAGATCCCGGTCACGAC 435
Query 455 ATGGCCATCATTCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATC-TCGCGCCAAGC 513
||||||||||| |||||||||||||||||||||||||||||||||||| | ||| |||||
Sbjct 436 ATGGCCATCATCCTTAACGAGGCTTACCAGCTTCTCTCTGATCCGATCAT-GCGTCAAGC 494
Query 514 CTATGACAAGGAGCAAGCAAAACTAGAAGAACTCAGAGGCTATACAGGGAAACCGATATA 573
||||||||||| |||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 495 CTATGACAAGGCGCAAGCAAAACTGGAAGAACTCAGAGGTTACACAGGGAAACCGATCTA 554
Query 574 CTCGGTTTGGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGACGAGGTTAAGTG 633
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 555 TTCGGTTTGGTGTGGACCAGAAACAGAGCAACGAGCTGCGTTTGTGGATGAGGTTAAGTG 614
Query 634 TGTTGGGTGTTTGAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTA 693
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TGTTGGTTGCTTAAAGTGTGCTTTGTGTGCAGAGAAAACATTTGCTATTGAAACTGCTTA 674
Query 694 CGGGAGAGCGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCAT 753
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 CGGAAGAGCGAGGGTTGTTGCTCAATGGGCTGATCCTGAATCCAAAATCAAAGAAGCCAT 734
Query 754 CGAAGCTTGCCCTGTAGACTGCATTTCAATGGTGGAGAGATCTGACCTTGCTCCATTGGA 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CGAAGCTTGCCCTGTAGACTGCATTTCAATGGTGGAGAGATCTGACCTTGCTCCATTGGA 794
Query 814 GTTCCTTATGTCAAAGCAACCACGAGGCAACGTGAGGATCGGGGTTGGAAACACGGTTGG 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GTTCCTTATGTCAAAGCAACCACGAGGCAACGTGAGGATCGGGGTTGGAAACACGGTTGG 854
Query 874 TGAGCGTGTCTCCAATGTATTTGTTGATGTCAAGAAGTTCCAAGAAAGATACGCTAAAGC 933
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 855 CGAGCGTGTCTCCAACGTATTTGTTGATGTCAAGAAGTTCCAAGAAAGATACGCCCAGGC 914
Query 934 TATGAGCAGAACCACAAAAGAGACCTCCCAGAGAGAAGTACAAATAAGTGCAGTAGAGGC 993
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 915 CATGAGCAGAACCACAAAAGAAACTTCCCAGAGAGAAGTACAAATAAGTGCAGTAGAGGC 974
Query 994 GATTAGGTCCATTTCCAATTGGCTATACTGGAGATCATCACCGTACACGAAACCATTGAG 1053
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 975 AATAAGGTCCATTTCCAATTGGCTATACTGGAGATCATCACCGTACACGAAACCGTTGAG 1034
Query 1054 TCCAGAATCAAACATGAGTCTAACTTTTACCAAAAGAAAGAAAGCTGTTGATCCAGATAT 1113
|||||| |||||||||||||||||||| |||||| |||| ||| | ||||||||||||||
Sbjct 1035 TCCAGATTCAAACATGAGTCTAACTTTCACCAAACGAAAAAAAACAGTTGATCCAGATAT 1094
Query 1114 CAGAAAGCTTCAAGATGTTGTGGCAGCAATGAAACAAGCAGACCAAAGCGGAAG-AAC-C 1171
||||||||||||||||| |||||||||||||||||||||||| || ||||| | || |
Sbjct 1095 CAGAAAGCTTCAAGATGCTGTGGCAGCAATGAAACAAGCAGAACAGAGCGGCGGGAAAAC 1154
Query 1172 -AAAGAGAAAGGATCAGCTTACTTGCTTGGAGAAGATTACTGGAGTCCATCAAACGCTGC 1230
||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||| ||
Sbjct 1155 TAAAGAAAAAGGATCAGCTTACATGCTTGGAGAAGATTATTGGACTCCATCAAACGCAGC 1214
Query 1231 TCTTCCCTCATCTGGAAACAACAACGGTTCCAAAGCTAGCTCGAATCCGCAAGTGACTCG 1290
||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||
Sbjct 1215 TCTTCCCTCGTCTGGAAACAACACCAGTTCCAAAGCTAGCTCGATTCCGCAAGTGACTCG 1274
Query 1291 TAAGACATTTCCTTCAGAAGAGAAACCAACTAGTAGAAGAGAAAATAGAAGACAGTTCAG 1350
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1275 TAAGACATTTCCTTCAGAAGAGAAACCTGCTAGTAGAAGAGAAAATAGAAGACAGTTCAG 1334
Query 1351 GATAAAGAAATTTCCAATTGGGACAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGC 1410
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 GATAAAGAAATTCCCAATTGGGACAGCCATAGTAGCAGTATTCTTGGTTCAGTACCAAGC 1394
Query 1411 AAGTTACAGAGCCGCCTCTGAGCTCAACGACCATATCGGCGGCTCGCTGGCTTTATCCAT 1470
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1395 AAGTTACAGAGCCGCCTCTGAGCTCAACGACCATATCGGCGGCTCGCTGGCTCTATCCAT 1454
Query 1471 AGTTAACAGTCCATGGCAGCAGATATTGTTAGCAGGAGTTACATGGTACTTCATTGGAGC 1530
||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 1455 AGTTAACAGCCCATGGCAGCAGATTTTGTTAGCCGGAATTACATGGTACTTCATTGGAGC 1514
Query 1531 AATGTTACTCCAACTTGTGGAAGCTGTTCAACACAAGCTAGAAGATAAAGAA 1582
|||| |||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1515 AATGCTACTCCAACTTGTGGAAGCTGTCCAACACAAGCTAGAAGATGAAGAA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5