BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23250.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489184 jgi|Araly1|489184|fgenesh2_kg.6__2318__AT5G23250.1 1807 0.0
Ahg487662 jgi|Araly1|487662|fgenesh2_kg.6__796__AT5G08300.1 1075 0.0
Ahg944715 jgi|Araly1|944715|scaffold_700944.1 106 5e-22
> Ahg489184 jgi|Araly1|489184|fgenesh2_kg.6__2318__AT5G23250.1
Length=1275
Score = 1807 bits (978), Expect = 0.0
Identities = 1185/1281 (93%), Gaps = 30/1281 (2%)
Strand=Plus/Plus
Query 1 AACGAAGATCGCTGAAAATTTCCTTTCCCATTTCGCT-G--AATAGGGTTCAGTACAAAA 57
||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1 AACGAAGATCGCTGAAAATTTCCTTTCCCATTTGGCTGGCTAATAGGGTTCAGTACAAAA 60
Query 58 TTCGGAATCGTAGGTTTAAGAATTTTAGATCATTGAAACAGCCATGTCTAGGCAGGTCAC 117
||| | | | ||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 TTC-G----G-A--TTT----A----AGATCATTGAAACAGCCATGTCTAGGCAGGTCAC 104
Query 118 GAGACTTCTCGGATCTCTTCGCCATTCCGGCGGCGGCTGCAGCGGCAGCTCAAAGGTCTG 177
|||||||||||||||||||||| || | ||||||| | ||||||| ||| || ||||
Sbjct 105 CAGACTTCTCGGATCTCTTCGCCGTT-C--CGGCGGC-G--GCGGCAGTTCAGAGTTCTG 158
Query 178 CTCTCTCACTTCATTGGTACAGTCTCGCTCCTTCGGGACAACTCCTCCGCCTCCTGCGGC 237
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 CTCTCTCACTTCATTGACACAGTCTCGCTCCTTCGGGACAACTCCTCCGCCTCCTGCGGC 218
Query 238 GGTCTTTGTCGACAAAAATACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGAC 297
||||||||||||||||| || || ||||||||||||||||||||||||||||| || ||
Sbjct 219 TGTCTTTGTCGACAAAAACACCCGCGTCATCTGCCAAGGTATTACCGGAAAGAATGGTAC 278
Query 298 CTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAAA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAAA 338
Query 358 GAAGGGTGGAACAGAACATTTGGGGCTACCTGTTTTCAACACTGTTGCTGAAGCTAAGGC 417
|||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 339 GAAGGGTGGAACTGAACATTTGGGTCTACCTGTTTTTAATACTGTTGCTGAAGCTAAGGC 398
Query 418 TGAGACTAAAGCCAATGCCTCTGTGATCTACGTACCTGCGCCTTTCGCTGCTGCTGCTAT 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 399 TGAGACTAAAGCCAATGCCTCTGTGATTTACGTACCTGCGCCTTTCGCTGCTGCTGCTAT 458
Query 478 CATGGAAGGTTTAGCTGCTGAGTTAGATCTTATTGTTTGTATCACTGAAGGAATTCCTCA 537
|||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 459 CATGGAAGGTTTAGCTGCTGAGTTAGATCTCATTGTCTGCATTACTGAAGGAATTCCTCA 518
Query 538 ACATGACATGGTTCGTGTAAAGGCTGCTCTTAACAGTCAATCAAAAACTAGGCTGATTGG 597
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 519 ACATGACATGGTTCGCGTAAAGGCTGCTCTTAACAGTCAATCAAAAACTAGGCTAATTGG 578
Query 598 CCCTAATTGTCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCAGGATA 657
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 579 CCCTAACTGCCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCGGGATA 638
Query 658 CATACACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATGAAGC 717
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CATCCACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATGAAGC 698
Query 718 TGTTTTCCAAACTACTGCAGTAGGTTTGGGGCAATCTACTTGTGTAGGAATTGGTGGGGA 777
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 699 TGTTTTCCAAACTACTGCAGTAGGTCTGGGGCAATCTACATGTGTAGGAATCGGTGGGGA 758
Query 778 TCCGTTTAATGGGACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGTTGACCCCCAAAC 837
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 759 TCCGTTTAATGGCACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGCTGACCCTCAAAC 818
Query 838 AGAAGGTATCGTTCTCATTGGAGAAATCGGTGGGACTGCAGAAGAAGATGCCGCTGCTTT 897
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 819 AGAAGGTATCGTTCTCATTGGAGAAATCGGTGGTACTGCAGAAGAAGATGCCGCTGCTTT 878
Query 898 GATAAAGGAAAATGGTACAGACAAGCCTGTAGTTGCTTTCATAGCCGGACTTACTGCACC 957
||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 879 GATTAAGGAAAGTGGTACAGACAAGCCTGTAGTTGCTTTCATTGCTGGACTTACTGCACC 938
Query 958 ACCAGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCCGGTGGTAAGGGCACGGCTCA 1017
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 939 ACCCGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCTGGTGGTAAGGGCACAGCTCA 998
Query 1018 AGACAAGATAAAGAGCCTAAGAGACGCAGGAGTTAAGGTGGTTGAGTCACCAGCTAAGAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AGACAAGATAAAGAGCCTAAGAGACGCAGGAGTTAAGGTGGTTGAGTCACCAGCTAAGAT 1058
Query 1078 TGGTGCGGCGATGTTTGAGCTTTTCCAAGAAAGAGGTCTTTTGAAGTGAAACTGAAGTAA 1137
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1059 TGGTGCGGCGATGTTTGAGATTTTCCAAGAAAGAGGTCTTTTGAAGTGAAACTGAATTTA 1118
Query 1138 TATCATAATACAATGAGTTGTTTCAGGAATCAACCTCTCTAA-TAACAACAGTTTGCCAA 1196
| |||||| || ||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1119 TGTCATAAAACGATGAGATGTTTCAGGAATCAACCTCTCTAAATAACAACAGTTTGCAAA 1178
Query 1197 AATAGAAGAGTGAAACGGAATTCCTAAAATTCCTTACCATGGA--GATAATTGCAGAGaa 1254
|||||||||| |||| |||| |||||| || || ||| | ||| |||||||| |
Sbjct 1179 AATAGAAGAGAGAAATGGAAACCCTAAATTTTTTTTCCACAAAAAGATTATTGCAGATAG 1238
Query 1255 aaaaaaaTAGTCACttttttt 1275
||||| ||||| ||||||||
Sbjct 1239 AAAAA--TAGTCTCTTTTTTT 1257
> Ahg487662 jgi|Araly1|487662|fgenesh2_kg.6__796__AT5G08300.1
Length=1456
Score = 1075 bits (582), Expect = 0.0
Identities = 830/951 (87%), Gaps = 12/951 (1%)
Strand=Plus/Plus
Query 179 TCTCTCACTTCATTGGTACAGTCTCGCTCCTTCGGGAC-AACTCCTCCGCCTCCTGCGGC 237
||||||||||| ||| || ||||||||||||| | | | ||||| |||||||||||
Sbjct 261 TCTCTCACTTCGTTGACCCAATCTCGCTCCTTCGCGTCGGA-TCCTCATCCTCCTGCGGC 319
Query 238 GGTCTTT-GTCGACAAAAATACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGA 296
|| ||| || |||||||| ||||| ||||| || |||||||| |||||||||||||| |
Sbjct 320 TGT-TTTCGTTGACAAAAACACACGAGTCATGTGTCAAGGTATCACCGGAAAGAACGGCA 378
Query 297 CCTTCCACACTGAACAAGCCATTGAATACGGCACCAAAATGGTAGCAGGAGTGACACCAA 356
| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 379 CTTTCCACACTGAACAAGCCATTGAGTACGGCACCAAAATGGTGGCAGGAGTGACACCGA 438
Query 357 AGAAGGGTGGAACAGAACATTTGGGGCTACCTGTTTTCAACACTGTTGCTGAAGCTAAGG 416
||||||||||||||||||| || || || |||||||||||| ||||||||||||||||||
Sbjct 439 AGAAGGGTGGAACAGAACACTTAGGTCTCCCTGTTTTCAACTCTGTTGCTGAAGCTAAGG 498
Query 417 CTGAGACTAAAGCCAATGCCTCTGTGATCTACGTACCTGCGCCTTTCGCTGCTGCTGCTA 476
|||| || |||||||||||||||||||| || || ||||| ||||| |||||||||||||
Sbjct 499 CTGACACCAAAGCCAATGCCTCTGTGATTTATGTTCCTGCACCTTTTGCTGCTGCTGCTA 558
Query 477 TCATGGAAGGT-TTAGCTGCTGAGTTAGATCTTATTGTTTGTATCACTGAAGGAATTCCT 535
| ||||| ||| || | |||||||||||||||||||| ||||| || |||||||| |||
Sbjct 559 TTATGGAGGGTATT-GAGGCTGAGTTAGATCTTATTGTGTGTATTACCGAAGGAATCCCT 617
Query 536 CAACATGACATGGTTCGTGTAAAGGC-TGCTCTTAACAGTCAATCAAAAACTAGGCTGAT 594
|||||||||||||| ||||| || || |||||||||| ||||||| ||||||||||||||
Sbjct 618 CAACATGACATGGTACGTGTTAA-GCATGCTCTTAACGGTCAATCCAAAACTAGGCTGAT 676
Query 595 TGGCCCTAATTGTCCTGGTATTATCAAACCTGGTGAATGCAAGATTGGGATCATGCCAGG 654
||| || || || ||||| |||||||| |||||||||||||||||||| || ||||| ||
Sbjct 677 TGGTCCAAACTGCCCTGGGATTATCAAGCCTGGTGAATGCAAGATTGGAATTATGCCGGG 736
Query 655 ATACATACACAAGCCGGGGAAGATAGGGATTGTTTCTCGATCTGGAACATTGACATATGA 714
|||||| |||||||| |||||||| || ||||| || ||||||||||| |||||||||||
Sbjct 737 ATACATCCACAAGCCTGGGAAGATCGGAATTGTCTCGCGATCTGGAACCTTGACATATGA 796
Query 715 AGCTGTTTTCCAAACTACTGCAGTAGGTTTGGGGCAATCTACTTGTGTAGGAATTGGTGG 774
||||||||||||||| |||||||| ||| | || ||||||||||||||||||||||||||
Sbjct 797 AGCTGTTTTCCAAACAACTGCAGTGGGTCTAGGCCAATCTACTTGTGTAGGAATTGGTGG 856
Query 775 GGATCCGTTTAATGGGACAAATTTTGTTGACTGCTTGGAGAAGTTCTTTGTTGACCCCCA 834
|||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 857 GGATCCTTTTAACGGGACAAACTTTGTTGACTGCTTGGAGAAATTCTTTGTTGATCCTCA 916
Query 835 AACAGAAGGTATCGTTCTCATTGGAGAAATCGGTGGGACTGCAGAAGAAGATGCCGCTGC 894
||||||||||||||||||||| ||||||||||| || ||||||||||||||||| || ||
Sbjct 917 AACAGAAGGTATCGTTCTCATAGGAGAAATCGGAGGCACTGCAGAAGAAGATGCTGCAGC 976
Query 895 TTTGATAAAGGAAAATGGTACAGACAAGCCTGTAGTTGCTTTCATAGCCGGACTTACTGC 954
|||||||||| || |||||| || |||||||| |||||||| || ||||||||||||||
Sbjct 977 ATTGATAAAGGCAAGTGGTACTGAGAAGCCTGTTGTTGCTTTTATTGCCGGACTTACTGC 1036
Query 955 ACCACCAGGGCGTCGTATGGGTCATGCGGGAGCCATTGTTTCCGGTGGTAAGGGCACGGC 1014
||||||||| ||||| ||||||||||| |||||||||||||| |||||||| || |||||
Sbjct 1037 ACCACCAGGTCGTCGAATGGGTCATGCAGGAGCCATTGTTTCTGGTGGTAAAGGTACGGC 1096
Query 1015 TCAAGACAAGATAAAGAGCCT-AAGAGACGCAGGAGTTAAGGTGGTTGAGTCACCAGCTA 1073
||| ||||| || ||||| | || || || || || ||||| ||||| || || ||||
Sbjct 1097 TCAGGACAAAATTAAGAGTTTGAAT-GATGCCGGGGTGAAGGTTGTTGAATCTCCGGCTA 1155
Query 1074 AGATTGGTGCGGCGATGTTTGAGCT-TTTCCAAGAAAGAGGTCTTTTGAAG 1123
||||||| || ||||||| |||||| |||| ||||||||||||||||||||
Sbjct 1156 AGATTGGAGCAGCGATGTATGAGCTCTTTC-AAGAAAGAGGTCTTTTGAAG 1205
> Ahg944715 jgi|Araly1|944715|scaffold_700944.1
Length=360
Score = 106 bits (57), Expect = 5e-22
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 257 ACACGTGTCATCTGCCAAGGTATTACCGGAAAGAACGGGACCTTCCACACTGAACAAGCC 316
||||| ||| |||| |||||||| |||||||| |||| || ||||||||||||||||||
Sbjct 256 ACACGAGTCTTCTGTCAAGGTATCACCGGAAAAAACGACACTTTCCACACTGAACAAGCC 315
Query 317 ATTGAATACGGCACCAAAATGGTA 340
|||||||||| |||||||||||||
Sbjct 316 ATTGAATACGACACCAAAATGGTA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5