BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23260.2
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489185 jgi|Araly1|489185|fgenesh2_kg.6__2319__AT5G23260.2 1456 0.0
> Ahg489185 jgi|Araly1|489185|fgenesh2_kg.6__2319__AT5G23260.2
Length=994
Score = 1456 bits (788), Expect = 0.0
Identities = 908/966 (94%), Gaps = 8/966 (1%)
Strand=Plus/Plus
Query 1 GTCATCCAACCTCAATCTCCGTTTCCAGATCCCCAAGAACACAGCTCAACAAAAaagagg 60
||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GTCATCCAACCTCAAACTCCATTTCCAGATCCCCAAGAACACAGCTCAACAAAAAGGAGG 60
Query 61 aagagggagccactcataagaggaagaagagagagatgggtagagggaagatagagataa 120
|||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 61 AAGAGGGAGCAACTAACAAGAGGAAGAAGAGAGAGATGGGGAGAGGGAAGATTGAGATAA 120
Query 121 agaagatagagaatcagaCGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTA 180
Query 181 TAAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCT 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCT 240
Query 241 CAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACTCATTG 300
| |||||||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CTGCCACCGGAAAGCTCTCAGAGTTCTGCTCCGAACAGGACAGGATGCCTCAACTCATTG 300
Query 301 ACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAAT 360
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 301 ACCGATACTTGCATACCAACGGACTGCGACTTCCTGATCATCAGGACGACCAGGATCAAT 360
Query 361 TGCACCATGAGATGGAACTACTAAGAAGAGAGACATGTAACCTTGAGCTTCGTCTGCGTC 420
|| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||
Sbjct 361 TGTACCATGAGATGGAAGTATTAAGAAGAGAGACATGTAACCTTGAGCTTCATCTGCGTC 420
Query 421 CAT-TCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGA 479
| | | || ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 421 CCTAT-CAAGGACATGACTTAGCCTCCATTCCTCCTCATGAGCTTGACGGACTCGAGCGA 479
Query 480 CAGCTAGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAATGAGTTAATGCAGCAACAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CAGCTCGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAATGAGTTAATGCAGCAACAG 539
Query 540 TTGGAGAATCTAAGCAGAAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTACCGT 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TTGGAGAATCTAAGCAGAAAGAGGCGGATGCTAGAAGAAGATAACAACAACATGTACCGT 599
Query 600 TGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCA 659
|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 600 TGGCTTCATGAGCATCGTGCAGCGATTGAGTTTCAGCAAGCTGGGATAGAGACGAAACCA 659
Query 660 GGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGCTATAAACCAGGGGAGTAT---CAG 716
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 660 GGGGAGTATCAACAGTTTCTAGAGCAGCTTCAGTACTATAAACCAGGGGAGTATGATCAA 719
Query 717 CAGTTTCTAGAGCAGCAGCAACAACAAC--C-AAACAGCGTTCTTCAGCTTGCTACACTT 773
|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 720 CAGTTTCTAGAGCAGCAGCAACAACAACAACCAAACAGTGTTCTTCAGCTTGCTACACTT 779
Query 774 CCTTCTGAGATTGATCCTACTTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGAT 833
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCTTCCGAGATTGATCCTAATTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGAT 839
Query 834 CCAACGGCCCAGAATGATTAATACAATTCTCAATAGATATCTACTCTTTCTTTATGGAGA 893
||||||||| ||| |||||||| ||| |||||||||||||||||| |||||| |||||
Sbjct 840 CCAACGGCCAAGAGCGATTAATATAATCCTCAATAGATATCTACTCGTTCTTTCCGGAGA 899
Query 894 CAGATTCATGAACTTTTATTACCTATATTTTGATAAGCCAGTGTCTTCTTTTGTGTGGCT 953
|||||| ||||||||||| |||||||||||| || ||||| ||||||||||||||||||
Sbjct 900 CAGATTAATGAACTTTTACTACCTATATTTTTATTAGCCAATGTCTTCTTTTGTGTGGCC 959
Query 954 ATGGAA 959
||||||
Sbjct 960 ATGGAA 965
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 991 TTGGTTATATAATTAATCATCATTATTAC 1019
|||||||||||||||||||||||||||||
Sbjct 966 TTGGTTATATAATTAATCATCATTATTAC 994
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37894179498
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5