BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23270.1
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894206 jgi|Araly1|894206|Al_scaffold_0006_2202 2372 0.0
Ahg354635 jgi|Araly1|354635|fgenesh1_pg.C_scaffold_7001808 93.5 5e-18
> Ahg894206 jgi|Araly1|894206|Al_scaffold_0006_2202
Length=1554
Score = 2372 bits (1284), Expect = 0.0
Identities = 1467/1556 (94%), Gaps = 9/1556 (1%)
Strand=Plus/Plus
Query 227 ATGGCAGGAGGGGCATTTATAGACGAGAGTGGCCATGGAGGAGACTAC---GAAGGTCGT 283
|||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 1 ATGGCAGGAGGGGCTTTTATCGACGAGAGTGGCCATGGAGGAGAATACGAAGAAGGTCGG 60
Query 284 GTAACCGCGTTTGTCATGATAACCTGCATTGTAGCTGCAATGGGTGGTCTCCTCTTTGGT 343
|||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct 61 GTAACCGCATTTGTCATGATTACCTGCATTGTTGCTGCAATGGGTGGTCTACTCTTCGGT 120
Query 344 TACGACATTGGTATCTCAGGAGGAGTGATATCAATGGAGGACTTTCTAACGAAATTCTTC 403
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 121 TACGACATCGGTATCTCAGGAGGAGTGACATCAATGGAGGAGTTTCTAACGAAATTCTTC 180
Query 404 CCTGACGTGCTTCGTCAAATGCAAAACAAAAGAGGGCGTGAAACAGAATATTGTAAATAT 463
|| |||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||
Sbjct 181 CCCGACGTGCTTCGTCAAATGCAAAACGAAACAGGGCGTGAAACAGAGTACTGTAAATAT 240
Query 464 GACAATGAGCTTCTTACTCTCTTCACTTCCTCTCTTTACCTCGCTGCTTTGTTCGCTTCT 523
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATAATGAGCTTCTCACTCTTTTCACTTCCTCTCTTTACCTCGCTGCTTTGTTCGCTTCT 300
Query 524 TTCCTTGCCTCCACCATTACAAGGCTTTTTGGCCGGAAGGTCTCAATGGTTATCGGGTCT 583
|||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 301 TTCCTTGCATCGACCATTACAAGGCTTTTTGGTCGGAAGGTCTCAATGACGATCGGGGGT 360
Query 584 CTCGCTTTTCTCTCTGGAGCTCTTCTCAACGGTTTAGCTATCAACCTCGAGATGTTGATC 643
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTGCTTTTCTCACTGGAGCTCTTCTCAACGGTTTAGCTATCAACCTCGAGATGTTGATC 420
Query 644 ATCGGGCGGTTATTTCTCGGTGTAGGTGTCGGATTCGCTAACCAATCTGTTCCTCTTTAC 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCGGGCGGTTATTTCTCGGTGTAGGTGTCGGATTCGCTAACCAATCTGTTCCTCTTTAC 480
Query 704 CTCTCTGAGATGGCTCCTGCTAAGATCAGAGGAGCTCTCAACATTGGTTTTCAATTAGCA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTCTGAGATGGCTCCTGCTAAGATCAGAGGAGCTCTCAACATTGGTTTTCAATTAGCA 540
Query 764 ATCACGATCGGGATCTTAGCCGCGAACATTGTCAATTACGTGACCCCAAAGCTCCAGAAC 823
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 541 GTCACGATCGGGATCTTAGCCGCGAACGTTGTCAATTACGTGACCCCAAAGCTCAAGAAC 600
Query 824 GGGATCGGATGGAGATTATCTCTCGGTTTAGCTGGAGTTCCGGCCGTTATGATGCTTGTC 883
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct 601 GGGATCGGATGGAGATTATCTGTCGGTTTAGCTGGAGTTCCGGCCTTTATGATGCTCCTC 660
Query 884 GGATGCTTTTTCTTGCCAGATACGCCAAACTCAATCCTTGAACGTGGAAACAAAGAAAAG 943
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGATGCTTTTTCTTGCCAGATACGCCAAACTCAATCCTTGAACGTGGAAACAAAGAAAAA 720
Query 944 GCTAAGGAGATGCTGCAGAAGATCAGAGGAACCATGGAGGTTGAGCATGAGTTTAATGAA 1003
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 721 GCTAAGGAGATGTTGCAGAAGATCAGAGGAACCATGGAGGTCGACCATGAGTTTAATGAA 780
Query 1004 CTTTGCAACGCGTGTGAAG-CCGCGAAGAAAGTTAAGCATCCATGGACGAACATAATGCA 1062
||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 781 CTTTGCAACGCGTGTGA-GTCCGCGAAGAGAGTTAAGCATCCATGGACGAACATAATGCA 839
Query 1063 AGCTCGTTATCGACCGCAGCTCACGTTTTGTACCTTCATCCCATTCTTCCAGCAGCTAAC 1122
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 840 AGCTCGTTATCGACCGCAGCTCACGTTCTGTACCTTCATCCCGTTCTTCCAGCAGCTAAC 899
Query 1123 CGGGATCAATGTCATTATGTTCTATGCACCTGTTCTGTTTAAGACCATCGGTTTTGGAAA 1182
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 900 CGGGATCAACGTCATTATGTTCTATGCACCTGTTCTGTTTAAGACAATTGGTTTTGGAAA 959
Query 1183 TGACGCCTCTCTCATATCCGCAGTTATCACCGGTCTTGTCAATGTCCTTTCCACCATTGT 1242
|||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 960 TGACGCATCTCTTATATCCGCAGTCATCACCGGTCTTGTCAATGTCCTCTCCACCATTGT 1019
Query 1243 CTCCATCTACTCCGTTGACAAATTCGGACGAAGAGCTTTGTTTCTTCAAGGTGGTTTTCA 1302
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1020 TTCCATCTACTCCGTCGACAAATTCGGACGCAGAGCTTTGTTTCTTCAAGGTGGTTTCCA 1079
Query 1303 GATGATCGTGACCCAGATCGCGGTCGGGTCGATGATCGGATGGAAATTTGGATTCAACGG 1362
||||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 1080 GATGATCTTGACCCAGATCGCGGTTGGATCGATGATCGGGTGGAAATTTGGATTCAACGG 1139
Query 1363 GGAAGGAA-ATTTGTCAGGGGTTGATGCGGATATAATCTTGGCACTGATATGTCTCTATG 1421
|||||||| ||| ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1140 GGAAGGAACATT-GTCAGAGGTTGATGCGGATATAATCTTGGCATTGATATGTCTCTATG 1198
Query 1422 TGGCGGGTTTCGCGTGGTCATGGGGACCGTTGGGATGGTTAGTGCCGAGTGAGATATGTC 1481
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1199 TGGCGGGTTTTGCGTGGTCATGGGGACCGTTGGGATGGTTGGTACCGAGTGAGATATGTC 1258
Query 1482 CATTGGAAATTAGATCAGCAGGACAATCGTTAAACGTTTCGGTGAACATGTTCTTTACAT 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1259 CATTGGAAATTAGATCAGCAGGACAATCGTTAAACGTTTCGGTGAACATGTTCTTCACCT 1318
Query 1542 TCTTCATTGGACAATTCTTCTTGACGATGCTTTGCCATATGAAGTTTGGTTTGTTCTATT 1601
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
Sbjct 1319 TCTTCATTGGACAATTCTTCTTGACGATGCTTTGCCATTTGAAGTTTGGTCTGTTCTACT 1378
Query 1602 TCTTCGCGGGTATGGTCTTGATCATGACCATTTTCATTTACTTCTTGTTGCCGGAGACAA 1661
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 TCTTCGCCGGCATGGTCTTGATCATGACCATTTTCATTTACTTCTTGTTGCCGGAGACAA 1438
Query 1662 AAGGTGTTCCGATTGAGGAGATGGGGAAAGTGTGGAAAGAGCATAGATATTGGGGGAAAT 1721
|||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1439 AAGGAGTTCCAATTGAGGAGATGGGGAGAGTGTGGAAGGAGCATAGATATTGGGGGAAGT 1498
Query 1722 ATAGTAATAatgatgatggtgatgatgttgatgatgatgcttat-t-tttagttga 1775
||||| |||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct 1499 ATAGTCGTAATGATGATGGTGATGATGTTGATGATGATGTTTATATGTTTAGTTGA 1554
> Ahg354635 jgi|Araly1|354635|fgenesh1_pg.C_scaffold_7001808
Length=1503
Score = 93.5 bits (50), Expect = 5e-18
Identities = 344/480 (72%), Gaps = 44/480 (9%)
Strand=Plus/Plus
Query 323 ATGGGTGGTCTCCTCTTTGGTTACGACATTGGTATCTCAGGAGGAGTGA-TATCAATGGA 381
|||||||||||| |||| ||||||||||| |||||||| || ||||||| | |||||||
Sbjct 94 ATGGGTGGTCTCATCTTCGGTTACGACATCGGTATCTCCGGTGGAGTGACGA-CAATGGA 152
Query 382 GGAC-TTTCTAACGAAA-TTCTTCCCTGACGTGCTT-CGTCAAATGCAAAACAAAAGAGG 438
| |||| | | ||| |||||||| | || | || || ||| || || || ||
Sbjct 153 -TTCGTTTC-AGCAAAAGTTCTTCCC-GTCG-GTTTACGAGAAA--CAGAA-GAAGGATC 205
Query 439 GCG--TGAAACAGAATATTGTAAATATGACAATGAGCTTCT-T-ACTCTCTTCACTTCCT 494
|| | |||| |||| || | || |||| | | | |||| | ||||||||||||||||
Sbjct 206 ACGTATCAAAC-CAATACTGCAGATTTGAC-A-GCGTTTCTCTCACTCTCTTCACTTCCT 262
Query 495 CTCTTTACCTCGCTGCT-T-TGTTCGCTTCTTTCCTTGCCTCC-ACCATTACAAGGCTTT 551
||||||||||||| || | || || || | | | ||||||| || |||| | |
Sbjct 263 CTCTTTACCTCGCCGCACTCTGCTC-CTCCAT-CGTTGCCTCTTACG-TTACCCGTAAGT 319
Query 552 TTGGCCGGAAGGTCTCAATGGTTATCGG-GTC-TCTCGCTTTT-CTCTCTGGAGCTCTTC 608
|||||||||| | || ||| || |||| | | || ||| | | | | ||||||||||
Sbjct 320 TTGGCCGGAAAATTTCGATGCTTCTCGGCGGAGT-TCTCTTCTGCGC-C-GGAGCTCTTC 376
Query 609 TCAACGGTTTAGCTATCAACC-TC-GAGATGTTGATCATCGGGCGGTTATTTCTCGGTGT 666
| |||||||| || | | || | | |||| | ||| | || || || || |||||| |
Sbjct 377 TTAACGGTTTCGCAA-CTGCCGTTTG-GATGCTCATCGTTGGTCGTTTGTTACTCGGTTT 434
Query 667 AGGTGTCGGATTCGCTAACCAATCTGTTCCTCTT-TACCTCTCTGAGATGGCTCC-TGCT 724
||| |||| ||| | || || ||||| || || || ||||| |||||||| || | |
Sbjct 435 TGGTATCGGCTTCACCAATCAGTCTGTGCCG-TTGTATCTCTCGGAGATGGCACCGTA-T 492
Query 725 AAGAT-CAGAGGAGC-TCTCAACATTGGTTTTCAATTAGCAATCACGATCGGGATC-TTA 781
|| || ||||||||| | | ||||| || || || | ||||||| || || ||| |||
Sbjct 493 AA-ATTCAGAGGAGCAT-TGAACATCGGATTCCAGCTCTCAATCACCATTGGTATCCTTA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72257194765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5