BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23280.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489189 jgi|Araly1|489189|fgenesh2_kg.6__2323__AT5G23280.1 1629 0.0
> Ahg489189 jgi|Araly1|489189|fgenesh2_kg.6__2323__AT5G23280.1
Length=1250
Score = 1629 bits (882), Expect = 0.0
Identities = 1139/1254 (91%), Gaps = 54/1254 (4%)
Strand=Plus/Plus
Query 71 aacaacaacaataacaacGATGGTCTTATGATCTCATCAAACGGAGCTTTAATCGAACAA 130
||||||| ||| |||||||| || |||||||||||||||| ||||||||||||||||||
Sbjct 28 AACAACATCAACAACAACGACGGAGTTATGATCTCATCAAATGGAGCTTTAATCGAACAA 87
Query 131 CAACCATCAGTCGTTGTGAAGAAACCACCGGCGAAAGATCGACATAGCAAAGTCGATGGA 190
| | |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 88 CCATCATCAGTCGTTGTGAAGAAACCTCCGGCTAAAGATCGACATAGCAAAGTCGATGGA 147
Query 191 AGAGGGAGAAGAATCCGTATGCCGATTATATGTGCTGCTCGTGTTTTTCAGCTAACGAGA 250
||||| ||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 148 AGAGGAAGAAGAATCCGTATGCCTATTATTTGCGCAGCTCGTGTTTTTCAGCTAACGAGA 207
Query 251 GAGCTTGGTCATAAGTCAGATGGCCAAACAATTGAATGGTTACTTCGTCAAGCAGAGCCT 310
||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 208 GAGCTTGGTCACAAATCAGATGGTCAAACGATTGAATGGTTACTTCGTCAAGCAGAGCCT 267
Query 311 TCTATTATAGCTGCAACAGGAACTGGTACAACTCCAGCGAGTTTCTCAACTGCTTCTGTC 370
|| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 268 TCGATTATAGCTGCAACAGGGACTGGTACAACTCCGGCGAGTTTCTCAACTGCTTCAGTC 327
Query 371 TCTATCCGTGGAGC-CA-CCAA-TTC----T-A-CTTCTTTAGATCATAAACCCACTTCT 421
|| ||||||||| | | ||| ||| | | ||||||||||||||||||||||||||
Sbjct 328 TCAATCCGTGGAACGAATTCAACTTCTTTATCATCTTCTTTAGATCATAAACCCACTTCT 387
Query 422 TTACTTGGTGGTACGTCACCGTTTATACTTGGGAAACGTGTTAGAGCTGATGAGGATAGT 481
|||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 388 TTACTTGGTGGTTCGTCACCGTTTATACTTGGGAAACGTGTGAGAGCTGATGA-G---G- 442
Query 482 AATAATAGTCATAATCATAGTTCTGTTGGTAAAGATGAGACCTTTACGACAACACCAGCT 541
|||||| ||||||||| ||||| ||| ||||||||| |||||||||| |||||||||
Sbjct 443 -ATAATA---ATAATCATAATTCTGGTGGGAAAGATGAGTCCTTTACGACGACACCAGCT 498
Query 542 GGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTGCTGGAGCT 601
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 499 GGGTTTTGGGCTGTTCCGGCGAGGCCGGATTTTGGACAAGTTTGGAGTTTTACAGGAGCT 558
Query 602 CCACAAGAGATGTTTTTACAACAACAACATCATCATCAGCAACCATTGTTTGTTCATCAG 661
||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||
Sbjct 559 CCACAAGAGATGTTTTT---ACAACAGCATCATCA--A-CAACCATTGTTTGTTCATCAG 612
Query 662 CAACAGCAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTT 721
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CAGCAACAACAACAAGCTGCAATGGGTGAAGCTTCTGCTGCTAGAGTTGGGAATTATCTT 672
Query 722 CCGGGTCATCTTAATTTGCTTGCTTCTTTATCCGGTGGATCTCCCGGGTCGGATCGAAGA 781
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 673 CCGGGTCATCTTAATTTGCTTGCTTCTTTATCCGGTGGATCTCCCGGGTCGGGTCGAAGA 732
Query 782 GAGGAAGATCCACGTTAATGGTTTAAGCCCTTTTAGGTTTGAGGGCAAAATTTGGTATAT 841
|||||||||||||||||| | | ||||||||||||||||||||||||| ||||||||||
Sbjct 733 GAGGAAGATCCACGTTAAAG-T--AAGCCCTTTTAGGTTTGAGGGCAAA-TTTGGTATAT 788
Query 842 ATATTTATTATCTTCTCTTCTCTATTGTTGTCATTGTTTCTCTAT--GTGTGTGTTTTAG 899
||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 789 ATATTTATTATCTTCTCTTCTCTTTTGTTGTCATTGTTTCTCTCTCTGTGTGTGTTTTAG 848
Query 900 TGTTGTTAGAGATTGATTTGGTTTCAGAATCTCTGCAAGTGATTTGAGAGTTTTCGTTAG 959
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 849 TGTTGTTAGAGATTGATTTGGTTTCAAAATCTCTGCAAGTGATTTGAGAGTTT-CGTTAG 907
Query 960 CTTTAAGTAAGTTAAAGA-CGGTTGTTTTTGATTAGGGTTAAATTAGGGTTTAAGAATCT 1018
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 908 CTTTAAGTAAGTTAA-GAACTGTTGTTTTTGATTAGGGTTAAATTAGGGTTTAAGAATCT 966
Query 1019 G--TT--GtttttttGGAGGGAGAT-CGATTTCTTATCGGATCCAAGATTACTTTTAGGA 1073
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 967 GGATTTTGTTTTTTTGGAGGGAGATTCGATTTCTTATCGGATCCAAGATTACTTTTAGGA 1026
Query 1074 AAAAAGGGAAAATTTCAGAAACCACGGTGGTTTCTTTTCCTCtttttttttttgtgtctg 1133
|||| ||||||| |||||||||| ||| |||||||||| | | |||||||| |||||||
Sbjct 1027 AAAA-GGGAAAAATTCAGAAACCGCGGGGGTTTCTTTTTCACCTTTTTTTT--GTGTCTG 1083
Query 1134 -tttttttttt--CC-GGTGAAACAGAGCCGTCGATTAAAATTTCAGATATA-TATTTAA 1188
|||||||||| || || |||| ||||||| ||||||||||| |||||||| |||| ||
Sbjct 1084 GTTTTTTTTTTTTCCCGGCGAAAGAGAGCCGCCGATTAAAATTCCAGATATACTATT-AA 1142
Query 1189 ATGTTTTAATATGGTTTGTTGTTGTTGTTGCTAATT-GTGTAATGTGTTACAACAATTGT 1247
|| |||| |||||||||||||||| |||||| ||||||||||||| | |||||||
Sbjct 1143 ATATTTTTATATGGTTTGTTGTTG------CTAATTTGTGTAATGTGTTATAGCAATTGT 1196
Query 1248 GGTGAAGCATTTGCGTAAGCTGTTAACCACGTTTATTTCTAATAAATGTTTCGA 1301
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1197 GGTGAAGCATTTGCGTAAGCTGTTAACCACGTTTGTTTTTAATAAATGTTTCGA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5