BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23290.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941854 jgi|Araly1|941854|scaffold_602398.1 804 0.0
Ahg915889 jgi|Araly1|915889|Al_scaffold_0008_640 544 5e-154
Ahg338893 jgi|Araly1|338893|fgenesh1_pg.C_scaffold_2000992 544 5e-154
Ahg949602 jgi|Araly1|949602|scaffold_801489.1 259 2e-68
Ahg920617 jgi|Araly1|920617|scaffold_101898.1 259 2e-68
> Ahg941854 jgi|Araly1|941854|scaffold_602398.1
Length=496
Score = 804 bits (435), Expect = 0.0
Identities = 471/488 (97%), Gaps = 3/488 (1%)
Strand=Plus/Plus
Query 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 11 GAGAGAGAA-AATGGCGTCGTCATCGTCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 69
Query 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172
|||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 70 AGCTGAAAGCGTTGAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAGATAGTCTTA 129
Query 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTCT 189
Query 233 CTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CTCTTCGACCTCAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTG 249
Query 293 GGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 250 GGACACTTGATGAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATCGAGA 309
Query 353 AAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAAC 411
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 310 AAACAATGGATGATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCCAAC 368
Query 412 TTTGATCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGAATG 471
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 369 TTTGACCAACTTTTTGAGGTCGCAGCGAAAAAGAAAAGCGTGGCAGATGAAGCTGGGATG 428
Query 472 GTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCGTGAAAATTATTCCTT 531
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 429 GTCTTGCAGGCCAAAGTTAAACAGTTAACAGCTGCAACCACGTCATGAAAATTCTTCCTT 488
Query 532 CTCTAGTG 539
||||||||
Sbjct 489 CTCTAGTG 496
> Ahg915889 jgi|Araly1|915889|Al_scaffold_0008_640
Length=357
Score = 544 bits (294), Expect = 5e-154
Identities = 333/352 (95%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 64 ATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTAAAAGCT 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 ATGGTGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTGAAGGCG 60
Query 124 TTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCAACAACATCCGT 183
|| ||||||||||||||||||||||||||||| |||||| ||||||| |||| |||||||
Sbjct 61 TTAAAGGAGCAAGCAGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTAACAGCATCCGT 120
Query 184 ACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 243
||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 180
Query 244 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTGGGACACTTGAT 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTTCCTGGGACACTTGAT 240
Query 304 GAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGAAAACAATGGAT 363
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 241 GAAGCTGATAAGGTTTTGGTTGATATTGGCACTGGTTACTTCGTCGAGAAAACAATGGAT 300
Query 364 GATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAACTTT 414
||||||||||||||||||||||||||||| || |||||||||||| ||||||
Sbjct 301 GATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCAAACTTT 351
> Ahg338893 jgi|Araly1|338893|fgenesh1_pg.C_scaffold_2000992
Length=357
Score = 544 bits (294), Expect = 5e-154
Identities = 333/352 (95%), Gaps = 2/352 (1%)
Strand=Plus/Plus
Query 64 ATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTAAAAGCT 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1 ATGGTGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATCAGCTGAAGGCG 60
Query 124 TTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCAACAACATCCGT 183
|| ||||||||||||||||||||||||||||| |||||| ||||||| |||| |||||||
Sbjct 61 TTAAAGGAGCAAGCAGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTAACAGCATCCGT 120
Query 184 ACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 243
||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAGCCACCGTCCGTCTTGATGCTGCCGCCGCAGCTCTCAACGATCTCTCTCTTCGACCT 180
Query 244 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTGCCTGGGACACTTGAT 303
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CAAGGTAAGAAGATGCTTGTACCACTGACTGCTTCTCTATACGTTCCTGGGACACTTGAT 240
Query 304 GAAGCTGATAAGGTTTTAGTTGATATTGGCACTGGTTACTTCATTGAGAAAACAATGGAT 363
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 241 GAAGCTGATAAGGTTTTGGTTGATATTGGCACTGGTTACTTCGTCGAGAAAACAATGGAT 300
Query 364 GATGGAAAAGATTATTGTCAGAGGAAGAT-CAACTTGCTCAAATCCAACTTT 414
||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 301 GATGGAAAAGATTATTGTCAGAGGAAGATTCA-CTTGCTCAAATCCAACTTT 351
> Ahg949602 jgi|Araly1|949602|scaffold_801489.1
Length=338
Score = 259 bits (140), Expect = 2e-68
Identities = 169/183 (92%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 11 GAGAGAGAA-AATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATTGGAATCGATC 69
Query 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172
|||| || || || ||||||||||| ||||||||||||||||| |||||| ||||||| |
Sbjct 70 AGCTGAAGGCGTTAAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTA 129
Query 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTAT 189
Query 233 CTC 235
|||
Sbjct 190 CTC 192
> Ahg920617 jgi|Araly1|920617|scaffold_101898.1
Length=338
Score = 259 bits (140), Expect = 2e-68
Identities = 169/183 (92%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 53 GAGAGAGAAGAATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATGGGAATCGATC 112
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 11 GAGAGAGAA-AATGGCGTCGTCATCATCGAGAGGAGAGATGGAGAAGATTGGAATCGATC 69
Query 113 AGCTAAAAGCTTTGAAGGAGCAAGCAGATCTGGAAGTGAATCTTCTTCAAGATAGTCTCA 172
|||| || || || ||||||||||| ||||||||||||||||| |||||| ||||||| |
Sbjct 70 AGCTGAAGGCGTTAAAGGAGCAAGCGGATCTGGAAGTGAATCTCCTTCAAAATAGTCTTA 129
Query 173 ACAACATCCGTACAGCTACCGTTCGTCTCGATGCCGCCGCCGCAGCTCTCAACGATCTCT 232
|||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 130 ACAACATCCGTACAGCCACCGTCCGTCTTGATGCCGCCGCCGCAGCTCTCAACGATCTAT 189
Query 233 CTC 235
|||
Sbjct 190 CTC 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5