BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23310.1
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489192 jgi|Araly1|489192|fgenesh2_kg.6__2326__AT5G23310.1 1410 0.0
> Ahg489192 jgi|Araly1|489192|fgenesh2_kg.6__2326__AT5G23310.1
Length=919
Score = 1410 bits (763), Expect = 0.0
Identities = 833/867 (96%), Gaps = 4/867 (0%)
Strand=Plus/Plus
Query 80 GACGACAACAGTGGGAGGAACTATGAGTTCTTGTGTTGTGACGACAAGCTGTTTCTATAC 139
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 55 GACGACGACAGTGGGAGGAACAATGAGTTCTTGTGTTGTGACGACAAGCTGTTTCTATAC 114
Query 140 AATTTCAGATTCTAGTATACGTTTGAAATCCCCCAAGCTCCTCAATCTGAGTAACCAGCA 199
|| |||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||
Sbjct 115 AAATTCAGATTCTAGTATACGTTTGAAATCCTCCAAGCTCGTCAATCAGAGTAACCAGCA 174
Query 200 GAGAAGACGCTCTCTTAGGTCTCGAGGTGGTTTAAAGGTTGAAGCTTACTACGGTCTAAA 259
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GAGAAGACACTCTCTTAGGCCTCGAGGTGGTTTAAAGGTTGAAGCTTACTACGGTCTAAA 234
Query 260 GACACCTCCTTATCCACTTGATGCTTTGGAGCCGTATATGAGTAGAAGAACACTAGAAGT 319
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 235 GACACCTCCTTATCCACTTGATGCTTTGGAACCGTATATGAGTCGAAGAACACTAGAAGT 294
Query 320 GCATTGGGGAAAACACCATCGAGGTTATGTAGATAATCTGAATAAACAGTTAGGGAAAGA 379
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 295 GCATTGGGGGAAACACCATCGAGGTTATGTAGACAATCTGAATAAACAGTTAGGGAAAGA 354
Query 380 TGATAGACTCTATGGATACACCATGGAAGAGCTTATCAAGGCTACATACAACAACGGGAA 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TGATAGACTCTATGGATACACCATGGAAGAGCTTATCAAGGCTACATACAACAACGGGAA 414
Query 440 TCCTTTACCCGAGTTCAACAACGCTGCACAGGTCTATAACCATGATTTCTTCTGGGAGTC 499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCCTTTGCCCGAGTTCAACAACGCTGCACAGGTCTATAACCATGATTTCTTCTGGGAGTC 474
Query 500 GATGCAACCTGGTGGTGGAGACACGCCTCAAAAGGGTGTTCTTGAGCAGATTGATAAGGA 559
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 475 GATGCAACCTGGTGGTGGAGACATGCCTCAAAAGGGTGTTCTTGAGCAGATTGACAAGGA 534
Query 560 TTTTGGTTCTTTCACAAATTTTAGAGAAAAGTTCACTAATGCAGCTCTTACTCAGTTTGG 619
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 535 TTTCGGTTCTTTCACAAATTTCAGAGAAAAGTTCACTAATGCTGCTCTTACTCAGTTTGG 594
Query 620 TTCTGGATGGGTCTGGCTTGTCTTAAAGAGGGAAGAGAGAAGGCTTGAGGTGGTCAAAAC 679
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 595 TTCTGGCTGGGTCTGGCTTGTCTTAAAGAGGGAAGAGAGAAGACTTGAGGTGGTCAAAAC 654
Query 680 CTCAAACGCCATTAACCCACTCGTGTGGGACGATATTCCAATCATCTGCGTGGATGTGTG 739
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 655 CTCAAACGCCATTAACCCACTCGTGTGGGACGATATTCCAATCATCAGCTTGGATGTGTG 714
Query 740 GGAGCACTCTTATTATCTGGACTACAAGAACGACAGGGCTAAGTATATAAACACATTTCT 799
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 GGAGCACTCTTATTATCTGGACTACAAGAACGACAGGGCTAGGTATATAAACACATTTCT 774
Query 800 GAACCACTTGGTGTCGTGGAACGCTGCCATGAGTCGGATGGCCCGTGCAGAAGCGTTTGT 859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AAACCACTTGGTGTCGTGGAACGCTGCCATGAGTCGGATGGCCCGTGCAGAAGCGTTTGT 834
Query 860 GAATCTTGGTGAACCCAACATCCCAATCGCTTAAGCTAAACA-CAACTCCTTG-GAAACT 917
|||||||||||||||||| ||||||||||||||||||||| | | || ||| || ||
Sbjct 835 GAATCTTGGTGAACCCAATATCCCAATCGCTTAAGCTAAA-AGCCTCTTTTTGAGAT-CT 892
Query 918 TGGGCAGTCTCATTTTTGCAAACAGAG 944
|||||||||||||||||||||||||||
Sbjct 893 TGGGCAGTCTCATTTTTGCAAACAGAG 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44184460803
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5