BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23320.1 Length=594 Score E Sequences producing significant alignments: (Bits) Value Ahg941857 jgi|Araly1|941857|scaffold_602401.1 893 0.0 Ahg487666 jgi|Araly1|487666|fgenesh2_kg.6__800__AT5G08335.1 455 2e-127 > Ahg941857 jgi|Araly1|941857|scaffold_602401.1 Length=635 Score = 893 bits (483), Expect = 0.0 Identities = 557/594 (94%), Gaps = 0/594 (0%) Strand=Plus/Plus Query 1 ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATCACTA 60 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 21 ATGACAGAGATCTTCAGTGACACTGGCATCAGACAGTTATCCCAAATGCTACTATCACTT 80 Query 61 ATCTTCTTCCACATATCCGAATACATTCTAGCCATCACCATTCACGGAGCATCAAACGTA 120 ||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||| Sbjct 81 ATCTTCTTCCACACATCCGAATACATTCTAGCCATCGCCATTCATGAAGCATCAAACGTA 140 Query 121 ACTCTTAGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCTTCTC 180 |||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| ||| Sbjct 141 ACTCTTAGCTCGCTTTTGATCAGTAAGCATTACGCTTTAGCAATGCTTGTGTCGCTGCTC 200 Query 181 GAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAGCAAC 240 |||||||| || |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 201 GAATACCTTACAGAGATTATCCTCTTTCCTGGGCTGAAACAACATTGGTGGGTCAGCAAC 260 Query 241 TTTGGACTCATAATGATCATCGTTGGGGAAATCATCAGGAAGGCAGCGATAATAACAGCG 300 |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 261 TTTGGACTCATAATGATCATCGCTGGGGAAATCATCAGGAAGGCAGCGATAGTAACAGCT 320 Query 301 GGAAGATCGTTCACTCACCTCATAAAGATCAACTACGAAGAGCATCACGGGCTTGTGACT 360 |||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||||| Sbjct 321 GGAAGATCGTTCACACACCTTATAAAGATCAACCACGAAGAGCATCACGCCCTTGTGACT 380 Query 361 CATGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATCTGGTCGGTC 420 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 381 CACGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGGTTTCTCATCTGGTCGGTC 440 Query 421 GGGACACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGTTGTCGTGTGG 480 ||||||||||||||||||||||| ||||||||| | |||| ||| |||||||||||||| Sbjct 441 GGGACACAAGTTATGCTCTGTAATCCCGTTTCAACGGTTGTGTTTACGGTTGTCGTGTGG 500 Query 481 CGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAATCAGTTTTTTGGGGTA 540 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 501 CGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAAGCAGTTTTTTGGGGTA 560 Query 541 CAGTATCTAGAGTATGCAGAGAGTGTTGCCTCTGGTGTTCCATTTGTGAACTGA 594 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 561 CAGTATCTAGAGTATGCAGAGAGTGTTGCTTCTGGTGTTCCATTTGTGAACTGA 614 > Ahg487666 jgi|Araly1|487666|fgenesh2_kg.6__800__AT5G08335.1 Length=922 Score = 455 bits (246), Expect = 2e-127 Identities = 492/608 (81%), Gaps = 28/608 (5%) Strand=Plus/Plus Query 1 ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATC-ACT 59 ||||||||||| || ||||||||| | ||||||||||| |||||||| | || | | | Sbjct 244 ATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCTGGCGA-T 302 Query 60 AATCTTCTTCCACATATCCGAATACATTCTAGCCATCA-CCATTCACGGAGCATC-AAAC 117 |||||||||||||| ||| ||||||||||| ||| | | ||||||| |||||||| | | Sbjct 303 AATCTTCTTCCACACATCGGAATACATTCTCGCCGT-AGCCATTCATGGAGCATCGAGA- 360 Query 118 GTAACTCTT-AGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCT 176 |||||| || || || || ||||||| ||| || || |||||||||||||| | ||| | Sbjct 361 GTAACT-TTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATCTCGGT 419 Query 177 TCTCGAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAG 236 ||||| ||| |||| |||||| | ||||||||||||||||||||||||||||| |||| Sbjct 420 CCTCGAGTACATAACCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGATCAG 479 Query 237 CAACTTT-GGACTCATAATGATCAT-CGTTGGGGAAATCATCAGGAAGG-CAGCGATAAT 293 ||| ||| || || ||||||||||| | |||| ||||||||| | || | |||||||| Sbjct 480 CAA-TTTCGGTCTTATAATGATCATAC-TTGGAGAAATCATCCGAAAAATC-GCGATAAT 536 Query 294 AACAGCGGGAAGATCGTTCACTCACCTCATAAAGAT-CAACTACGAAGAGCATCACGGGC 352 ||||| || ||||||||||| ||||| |||||||| | | || |||||||| ||| Sbjct 537 CACAGCAGGTAGATCGTTCACACACCTTATAAAGATTCGCCGG-GAGGAGCATCATAGGC 595 Query 353 TTGTGACTCATGGTGTGTAT-AGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATC 411 ||||||| | || |||||| | | | ||||||||||| ||||||| ||| |||||||| Sbjct 596 TTGTGACGGAAGGAGTGTATCAAA-TCATGAGGCATCCGAGTTACTCCGGGTTTCTCATT 654 Query 412 TGGTCGGTCGGGA-CACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGT 470 ||||| || |||| | ||||| ||||| ||||| || ||||||| |||||||| ||||| Sbjct 655 TGGTCTGT-GGGAACCCAAGTAATGCTGTGTAATCCAATTTCAGCCGTTGCGTTTGCGGT 713 Query 471 TGTCGTGTGGCGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCT-GAATCAGT 529 ||| ||||||||||| ||||| |||||||||| || |||||| ||| || ||| || | Sbjct 714 TGTGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTA-CTTGAAGCAAT 772 Query 530 TTTTTGGG-GTACAGTATCTAGAGTATGCAG-AGAGTGTTGCCT-CTGGTGTTCCATTTG 586 |||||||| | ||||||| | |||||||| | |||| ||| ||| |||||||||| |||| Sbjct 773 TTTTTGGGAG-ACAGTATGTGGAGTATGC-GCAGAGAGTT-CCTTCTGGTGTTCCTTTTG 829 Query 587 TGAACTGA 594 | |||||| Sbjct 830 TAAACTGA 837 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21748685730 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5