BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23320.1
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941857 jgi|Araly1|941857|scaffold_602401.1 893 0.0
Ahg487666 jgi|Araly1|487666|fgenesh2_kg.6__800__AT5G08335.1 455 2e-127
> Ahg941857 jgi|Araly1|941857|scaffold_602401.1
Length=635
Score = 893 bits (483), Expect = 0.0
Identities = 557/594 (94%), Gaps = 0/594 (0%)
Strand=Plus/Plus
Query 1 ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATCACTA 60
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 21 ATGACAGAGATCTTCAGTGACACTGGCATCAGACAGTTATCCCAAATGCTACTATCACTT 80
Query 61 ATCTTCTTCCACATATCCGAATACATTCTAGCCATCACCATTCACGGAGCATCAAACGTA 120
||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 81 ATCTTCTTCCACACATCCGAATACATTCTAGCCATCGCCATTCATGAAGCATCAAACGTA 140
Query 121 ACTCTTAGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCTTCTC 180
|||||||| |||||||| |||| |||||||||||||||||||||||| ||||||| |||
Sbjct 141 ACTCTTAGCTCGCTTTTGATCAGTAAGCATTACGCTTTAGCAATGCTTGTGTCGCTGCTC 200
Query 181 GAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAGCAAC 240
|||||||| || |||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 201 GAATACCTTACAGAGATTATCCTCTTTCCTGGGCTGAAACAACATTGGTGGGTCAGCAAC 260
Query 241 TTTGGACTCATAATGATCATCGTTGGGGAAATCATCAGGAAGGCAGCGATAATAACAGCG 300
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 261 TTTGGACTCATAATGATCATCGCTGGGGAAATCATCAGGAAGGCAGCGATAGTAACAGCT 320
Query 301 GGAAGATCGTTCACTCACCTCATAAAGATCAACTACGAAGAGCATCACGGGCTTGTGACT 360
|||||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||||
Sbjct 321 GGAAGATCGTTCACACACCTTATAAAGATCAACCACGAAGAGCATCACGCCCTTGTGACT 380
Query 361 CATGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATCTGGTCGGTC 420
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 381 CACGGTGTGTATAGACTAATGAGGCATCCAAGTTACTGCGGGTTTCTCATCTGGTCGGTC 440
Query 421 GGGACACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGTTGTCGTGTGG 480
||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||
Sbjct 441 GGGACACAAGTTATGCTCTGTAATCCCGTTTCAACGGTTGTGTTTACGGTTGTCGTGTGG 500
Query 481 CGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAATCAGTTTTTTGGGGTA 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 501 CGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCTGAAGCAGTTTTTTGGGGTA 560
Query 541 CAGTATCTAGAGTATGCAGAGAGTGTTGCCTCTGGTGTTCCATTTGTGAACTGA 594
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 561 CAGTATCTAGAGTATGCAGAGAGTGTTGCTTCTGGTGTTCCATTTGTGAACTGA 614
> Ahg487666 jgi|Araly1|487666|fgenesh2_kg.6__800__AT5G08335.1
Length=922
Score = 455 bits (246), Expect = 2e-127
Identities = 492/608 (81%), Gaps = 28/608 (5%)
Strand=Plus/Plus
Query 1 ATGACAGAGATCTTCAGTGACACCAGCATCAGACAGTTATCTCAAATGCTACTATC-ACT 59
||||||||||| || ||||||||| | ||||||||||| |||||||| | || | | |
Sbjct 244 ATGACAGAGATATTTAGTGACACCGGGTTCAGACAGTTAACTCAAATGTTCCTGGCGA-T 302
Query 60 AATCTTCTTCCACATATCCGAATACATTCTAGCCATCA-CCATTCACGGAGCATC-AAAC 117
|||||||||||||| ||| ||||||||||| ||| | | ||||||| |||||||| | |
Sbjct 303 AATCTTCTTCCACACATCGGAATACATTCTCGCCGT-AGCCATTCATGGAGCATCGAGA- 360
Query 118 GTAACTCTT-AGTTCGCTTTTAATCACCAAGCATTACGCTTTAGCAATGCTTCTGTCGCT 176
|||||| || || || || ||||||| ||| || || |||||||||||||| | ||| |
Sbjct 361 GTAACT-TTAAGCTCACTCTTAATCAGCAAACACTATGCTTTAGCAATGCTAATCTCGGT 419
Query 177 TCTCGAATACCTAACGGAGATTATCCTCTTCCCGGGGCTGAAACAACACTGGTGGGTCAG 236
||||| ||| |||| |||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 420 CCTCGAGTACATAACCGAGATTGTTTTCTTCCCGGGGCTGAAACAACACTGGTGGATCAG 479
Query 237 CAACTTT-GGACTCATAATGATCAT-CGTTGGGGAAATCATCAGGAAGG-CAGCGATAAT 293
||| ||| || || ||||||||||| | |||| ||||||||| | || | ||||||||
Sbjct 480 CAA-TTTCGGTCTTATAATGATCATAC-TTGGAGAAATCATCCGAAAAATC-GCGATAAT 536
Query 294 AACAGCGGGAAGATCGTTCACTCACCTCATAAAGAT-CAACTACGAAGAGCATCACGGGC 352
||||| || ||||||||||| ||||| |||||||| | | || |||||||| |||
Sbjct 537 CACAGCAGGTAGATCGTTCACACACCTTATAAAGATTCGCCGG-GAGGAGCATCATAGGC 595
Query 353 TTGTGACTCATGGTGTGTAT-AGACTAATGAGGCATCCAAGTTACTGCGGTTTTCTCATC 411
||||||| | || |||||| | | | ||||||||||| ||||||| ||| ||||||||
Sbjct 596 TTGTGACGGAAGGAGTGTATCAAA-TCATGAGGCATCCGAGTTACTCCGGGTTTCTCATT 654
Query 412 TGGTCGGTCGGGA-CACAAGTTATGCTCTGTAACCCCGTTTCAGCAGTTGCGTTCGCGGT 470
||||| || |||| | ||||| ||||| ||||| || ||||||| |||||||| |||||
Sbjct 655 TGGTCTGT-GGGAACCCAAGTAATGCTGTGTAATCCAATTTCAGCCGTTGCGTTTGCGGT 713
Query 471 TGTCGTGTGGCGGTTTTTTGCTCAGAGAATACCGTACGAGGAGTATTTTCT-GAATCAGT 529
||| ||||||||||| ||||| |||||||||| || |||||| ||| || ||| || |
Sbjct 714 TGTGGTGTGGCGGTTCTTTGCAGAGAGAATACCTTATGAGGAGCATTA-CTTGAAGCAAT 772
Query 530 TTTTTGGG-GTACAGTATCTAGAGTATGCAG-AGAGTGTTGCCT-CTGGTGTTCCATTTG 586
|||||||| | ||||||| | |||||||| | |||| ||| ||| |||||||||| ||||
Sbjct 773 TTTTTGGGAG-ACAGTATGTGGAGTATGC-GCAGAGAGTT-CCTTCTGGTGTTCCTTTTG 829
Query 587 TGAACTGA 594
| ||||||
Sbjct 830 TAAACTGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21748685730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5