BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23330.1
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489194 jgi|Araly1|489194|fgenesh2_kg.6__2328__AT5G23330.1 1640 0.0
Ahg487667 jgi|Araly1|487667|fgenesh2_kg.6__801__AT5G08340.1 610 7e-174
> Ahg489194 jgi|Araly1|489194|fgenesh2_kg.6__2328__AT5G23330.1
Length=1183
Score = 1640 bits (888), Expect = 0.0
Identities = 1078/1167 (92%), Gaps = 24/1167 (2%)
Strand=Plus/Plus
Query 1 CCGGCGAAGAGTTTCGGAGAACAAGTTTGGTCTTTTTAGGGGTTTGAGCAGTGGAGTCGG 60
|||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct 1 CCGGCGAAGAGTTTCGGAGAGCAAGTTTGGT-TTTTTAGGGGTTTGAGCAGTAGAGTCGG 59
Query 61 -TA-ACCATGTTATGCGGAGGCTCTCGCGCCTCCGTGCATTTGTGGGACCATCGTCATCC 118
| |||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 60 AGAGACCATGTTGTGCGGAGGCTCTCGTGCCTCCGTGCATTTGTTGGACCACCGTCATCC 119
Query 119 TCCTAGGCTCGGTGCTAAGGTTTTGCGGAAATCTTCGTTCATGCTCAGACCTTGTTCGGC 178
||||| ||||||||||||||| |||||| ||||||| ||| | || ||||||||||||||
Sbjct 120 TCCTACGCTCGGTGCTAAGGTCTTGCGGCAATCTTCATTCGTCCTTAGACCTTGTTCGGC 179
Query 179 TATATCGCAGCAGCGGATAAAGTCGTCGT--T-TAGGTCTCACTGTAAAACTCCAAGAAA 235
|| ||||||||||| ||| |||||||||| | ||||||||||||||||| |
Sbjct 180 TAAATCGCAGCAGCCGATGAAGTCGTCGTCGTATAGGTCTCACTGTAAAA---C------ 230
Query 236 AATCCCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGA 295
| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 231 --T-CCAGCTCCTCTCGATTGTTTCAGCCAGGGAGATGATAATCTTGAGCTTTCAGCTGA 287
Query 296 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 AGGGCTTTCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATAT 347
Query 356 CGGTCATCGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTT 415
||||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||||
Sbjct 348 CGGTCATCGAGAGCTTGCAATCCAAGCTGCAAGAACTGGTACTCCATATCTATTGTCGTT 407
Query 416 TGTTGGATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA 475
||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 408 TGTTGGAATGGCTGAAGTACTTGGTTGGAAACCTAGAGCACCGATAGTAGCCAAATGCGA 467
Query 476 CAGAAAACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 535
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TAGAAAACGGGTGCTTTCCTCTTGGGCATCGTATTGTGGTAACATAGCACCGGTAGAGTT 527
Query 536 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTC 595
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 528 TGAGATTGAATTTGCCAGCGTTCGACACCTTAACCCACAGCAGTTTGTCGAGAAGTTGTC 587
Query 596 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AAGAGAGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGC 647
Query 656 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGCGCTTACAT 715
||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 648 TTCTGGTGACGCCTCTGAACTTGTGAGGTTATGTAAAGAGTACGGTATCAGCGCTTACAT 707
Query 716 CATTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAG---GAGGAGGACTC 772
||||||||| ||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 708 CATTAACTCGGTGATGGATAAGAACCAAGTCTCTGGAAACACGGACACAGAGGAGGACTC 767
Query 773 AAAGTCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGG 832
|||||| ||||||||||| |||||||| |||||||||||||| |||||||| ||||||||
Sbjct 768 AAAGTCAAAAGAAAGAGGACAAGTCTCGTCCACACGAGTCCGACATGCTCTTGCTGCAGG 827
Query 833 AGATGTGAGGTATGTAACAGAGCTCCTCGGCAGACCACACAGGGTCATCTCTCGGACAAG 892
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 828 AGATGTGAGGTATGTAACTGAGCTCCTCGGCAGACCACACAGGGTTATCTCAAGGGTGAG 887
Query 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTCGCTTCAGACATCTTCGCTACTAAA 952
||||||||||||||| |||||| || ||||| || ||||||| ||||| |||||||| ||
Sbjct 888 AACACAAGATTTAACAAGCAAAGGAAGGAGGGTCACGCTTCATACATCGTCGCTACTGAA 947
Query 953 TTTACCACCAGGGAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1012
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TTTACCACCTGGAAATGGAGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAGCATCC 1007
Query 1013 AATTTCGTGTAAGGTTATTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAACG 1072
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 AATTTCGTGTAACGTTGTTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAGAATG 1067
Query 1073 TTTCCACAACTCAGATGAGTCTCAAGA-G--TTTCAACTCTTAGGGATTGAGTTCGGTTA 1129
||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||
Sbjct 1068 TTTCCACAACTCAGATGGGTCTCAAGAAGAGTTTCTACTCTTAGGGATTGAGTTCGGTTG 1127
Query 1130 ATTCACACATTGATAATCAAAAGAATA 1156
|||||||||||||||||||||||||||
Sbjct 1128 ATTCACACATTGATAATCAAAAGAATA 1154
> Ahg487667 jgi|Araly1|487667|fgenesh2_kg.6__801__AT5G08340.1
Length=1205
Score = 610 bits (330), Expect = 7e-174
Identities = 764/969 (79%), Gaps = 47/969 (5%)
Strand=Plus/Plus
Query 185 GCAGCAGCGGATAAAGTCGTCGTTTAGGTCTCACTGTAAAACTCCAAGAAAAATCCC-AG 243
||| |||||||| | || || ||| || |||| || | |||||| || ||||||| |
Sbjct 235 GCATCAGCGGATGATTTCTTCATTTGGGCCTCATTGCAGAACTCCCGGAGAAATCCCTA- 293
Query 244 CTCCTCTCGATTGTTTCAGCCAGGGAGATGATCATCCTGAGCTTTCAGCTGAAGGGCTT- 302
|| || | ||||||||||||| |||| ||| || |||||||| ||| |||| || ||
Sbjct 294 TTCTTCACAATTGTTTCAGCCAACGAGAAGATGATACTGAGCTTCCAGTTGAA-GGATTA 352
Query 303 TCCCCAGTTGCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCCTGCATATCGGTCAT 362
||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 353 TCCCCAGTTTCAGGAGGCATTGTTGCTCTAGGGAAGTTTGATGCCTTACATATCGGCCAT 412
Query 363 CGAGAGCTTGCAATTCAAGCTGCAAGAATTGGTACTCCGTATCTACTGTCGTTT-GTTGG 421
|||||||| ||||||||||| |||||||||| ||||| |||||| | || ||| |||||
Sbjct 413 CGAGAGCTAACAATTCAAGCTTCAAGAATTGGAACTCCATATCTATTATC-TTTCGTTGG 471
Query 422 ATTGGCTGAAGTACTTGGTTGGAAGCCTAGAGCACCAATAGTAGCCAAATGCGA-CAGAA 480
| |||| || |||||||||||| ||||||| || |||||||| || ||||| || | |||
Sbjct 472 AATGGCCGAGGTACTTGGTTGGGAGCCTAGGGCTCCAATAGTGGCTAAATGTGATC-GAA 530
Query 481 AACGAGTGCTTTCCTCTTGGGCATCGTATTGTGGTA-ACATAGCACCGGTAGAGTTTGAG 539
|| | |||||| |||||||||| || |||||||| | ||| |||||||| |||| |||
Sbjct 531 AAAGGGTGCTTACCTCTTGGGCCTCATATTGTGG-AGACAGAGCACCGGAAGAGCACGAG 589
Query 540 ATTGAATTTGCCAGCGTTCGACACCTTAACCCACAACAGTTTGTCGAGAAGTTGTCAAGA 599
|| |||||||||||||| ||||| |||| ||||||||||||||| |||||| |||||| |
Sbjct 590 ATAGAATTTGCCAGCGTGCGACATCTTACCCCACAACAGTTTGTGGAGAAGCTGTCAA-A 648
Query 600 G-AGCTTAGAGTCTGCGGAGTTGTGGCAGGCGAAAATTACAGGTTTGGATACCGGGCTTC 658
| |||| ||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 649 GGAGCTCAGAGTCTGCGGAGTTGTGGCAGGTGAAAATTACAGATTTGGATATAAAGCGTC 708
Query 659 TGGTGACGCCTCTGAACTTGTGAGGTTATGCAAAGACTTTGGTATCAGC-GCTTACATCA 717
|||||| |||||||| || ||||| | ||| | || | |||||||| | ||||||||||
Sbjct 709 TGGTGATGCCTCTGAGCTAGTGAGACTGTGCGAGGAATATGGTATCA-CTGCTTACATCA 767
Query 718 TTAACTCCGTGATGGATAAGAACCAAGTCTCTGTAAACACAGAGG-AGGAGGACTCAAAG 776
| ||||| |||||||| ||||| |||| ||| | ||| | ||| ||| |||||||||
Sbjct 768 TAAACTCTGTGATGGACAAGAAACAAGGCTCAGGAAAGAGAGACTCAGG-GGACTCAAAA 826
Query 777 TCGAAAGAAAGAGGTCAAGTCTCATCCACACGAGTCCGTCATGCTCTAGCTGCAGGAGAT 836
|| ||| | || |||||||| || ||||| || || || ||||| || || ||||||
Sbjct 827 --GACAGA--G-GG-CAAGTCTCTTCTACACGTGTACGCCAAGCTCTTGCGGCGGGAGAT 880
Query 837 GTGAGGTATGTAACAGAGCTCCTCGGCAGACCACA-CAGGGTCATCTCTCG-GA--CAAG 892
||| ||| ||| |||||||||| ||||| |||| | || | |||| | | || || |
Sbjct 881 ATGAAGTACGTATCAGAGCTCCTTGGCAGGGCACATC-GGCTTATCT-T-GAGAGTCA-G 936
Query 893 AACACAAGATTTAACGAGCAAAAGAGGGAGGATCTC-GCTTCAGACATCTTCGCTACTAA 951
||| |||||| | |||| |||| | | ||| || | | | || ||| || |||| |
Sbjct 937 AACCCAAGATATGCCGAGTGAAAG-G--ATGATTTCTG-TCCCGAGATCATCAATACTTA 992
Query 952 ATTTACCACCAGGGAATGG-AGTTTACAAAGCATGCTCGCTTATAGTTGGTGATAAG-CA 1009
||||||| |||||||| || | |||| || ||||| | |||| |||| |||||| || |
Sbjct 993 ATTTACCGCCAGGGAACGGTA-TTTATAAGGCATGTTTGCTTCTAGTCGGTGATGAGTCT 1051
Query 1010 TCCAATTTCGTGTAAGGTTA-TTGTCGATACATCGAATCTCTATATAGAAACAGAGGAAG 1068
|| |||| |||||| || | |||| || ||||| ||| || || |||||||| |||| |
Sbjct 1052 TC-AATTCCGTGTACCGT-AGTTGTTGAGACATCAAATATCCATGTAGAAACAAAGGAGG 1109
Query 1069 AACGTTTCCACAACTCAGAT-GAGTCTCAAGAGTTTCA-ACTCTT-AGGGATTGAGTTCG 1125
||| || || | |||| | ||||||||| ||| | |||||| || | |||||||||
Sbjct 1110 TACGACTCTGTAATTTAGATTG-GTCTCAAGAATTT-AGACTCTTGAGTG-TTGAGTTCG 1166
Query 1126 GTTAATTCA 1134
||| |||||
Sbjct 1167 GTTGATTCA 1175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44985042060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5