BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23340.1
Length=1679
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941859 jgi|Araly1|941859|scaffold_602403.1 2060 0.0
> Ahg941859 jgi|Araly1|941859|scaffold_602403.1
Length=1261
Score = 2060 bits (1115), Expect = 0.0
Identities = 1209/1256 (96%), Gaps = 0/1256 (0%)
Strand=Plus/Plus
Query 106 TGATTTTGATCTTTCCGATCATGTCATCGGTCTGTGTTAACGAAGCATTAACCGATGACG 165
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TGATTTTGATCTCTCCGATCATGTCATCGGTCTGTGTTAACGAAGCATTAACCGATGACG 62
Query 166 AGCTGAGATGGGTATTGTCGAGACTAGACAGTGATAAAGATAAGGAAGTGTTTGGTTTGG 225
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 63 AGCTGAGATGGGTATTGTCGAGACTAGACAGTGATAAGGACAAGGAAGTGTTTGGTTTGG 122
Query 226 TCTGCAAGAGGTGGCTAAATCTGCAGAGTACCGACCGGAAGAAGCTAGCGGCACGTGCTG 285
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 123 TCTGCAAGAGGTGGCTAAATCTGCAGAGCACCGACCGGAAGAAGCTAGCGGTGCGTGCTG 182
Query 286 GTCCACATATGCTCCGCCGTCTCGCTTCTAGGTTCACTCAAATCGTCGAATTGGATTTGT 345
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GTCCACATATGCTCGGCCGTCTCGCTTCTAGGTTCACTCAAATCGTCGAATTGGATTTGT 242
Query 346 CTCAGTCAATTTCTAGGTCCTTTTATCCAGGAGTTACTGATTCTGACCTCGCTGTTATCT 405
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 243 CTCAGTCAATTTCTAGGTCATTTTATCCAGGTGTTACTGATTCTGACCTCGCTGTTATCT 302
Query 406 CTGAGGGATTCAAGTTTCTCAGAGTTCTTAATCTTCACAACTGTAAAGGTATTACAGATA 465
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTGAGGGTTTCAAGTGTCTCAGAGTTCTTAATCTTCACAACTGTAAAGGTATTACAGATA 362
Query 466 CTGGATTGGCCTCAATTGGAAGGTGTCTTTCTTTACTGCAGTTTTTGGATGTATCATATT 525
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 363 CTGGTTTGGCCTCAATTGGAAGGTGTCTTTTTTTACTGCAGTTTTTGGATGTATCCTATT 422
Query 526 GTAGAAAGCTCTCAGATAAAGGATTATCAGCTGTTGCAGAAGGCTGCCATGATCTAAGGG 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 GTAGAAAGCTCTCAGATAAAGGATTATCAGCTGTTGCAGAAGGCTGCCATGATCTAAGGG 482
Query 586 CATTGCATTTAGCGGGTTGTCGTTTCATCACCGATGAATCGTTGAAATCACTCTCTGAGA 645
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 483 CATTGCATCTAGCGGGTTGTCGTTTCATCACTGATGAATCGCTGAAATCACTCTCTGAGA 542
Query 646 GATGCCGTGATCTCGAAGCTCTGGGGCTACAAGGCTGCACCAATATCACTGATTCAGGTC 705
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 543 GATGCCATGATCTTGAAGCTCTCGGGCTACAAGGCTGCACCAATATCACTGATTCAGGCC 602
Query 706 TTGCTGATCTTGTGAAGGGATGCAGAAAGATAAAATCTTTAGACATTAATAAATGTAGCA 765
|| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 603 TTACTGATCTTGTGAAGGGATGCAGGAAGATAAAATCTTTGGACATTAATAAATGTAGCA 662
Query 766 ATGTTGGAGATGCTGGAGTTTCGAGCGTGGCGAAAGCTTGTGCATCTTCCCTCAAGACAC 825
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 663 ATGTGGGAGATGCTGGAGTTTCCAGCGTGGCGAAAGCTTGTGCATCTTCCCTCAAGACGC 722
Query 826 TCAAATTGCTGGACTGTTACAAAGTCGGGAACGAATCTATATCGTCGCTGGCGCAGTTTT 885
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 723 TCAAATTGCTGGACTGTTACAAAGTTGGGAACGAATCTATATCGTCCCTGGCGCAGTTTT 782
Query 886 GCAAGAATCTGGAAACTCTGATAATCGGTGGATGCAGAGATATCTCTGACGAATCTATCA 945
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 783 GCAAGAATCTGGAAACTCTGATAATCGGTGGATGCAGAGACATCTCTGACGAATCTATCA 842
Query 946 TGTTACTGGCAGATTCCTGTAAAGACAGTCTCAAGAACTTGAGGATGGATTGGTGCTTGA 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGTTACTGGCAGATTCCTGTAAAGACAGTCTCAAGAACTTGAGGATGGATTGGTGCTTGA 902
Query 1006 ATATATCTGACTCTTCCCTTAGCTGCATTCTCAAGCAGTGCAAGAACTTGGAGGCTCTAG 1065
||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 903 ATATATCTGACGCTTCCCTTAGCTGCATTCTGAAGCAGTGCAGGAACTTGGAGGCTCTAG 962
Query 1066 ATATTGGTTGCTGTGAAGAGGTCACAGACACTGCTTTCCGGGATTTAGGGAGCGACGATG 1125
|||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 963 ATATCGGTTGCTGTGCAGAGGTCACAGACACTGCTTTCCGAGATTTGGGGAGCGACGATG 1022
Query 1126 TTTTGGGATTGAAGGTTTTAAAGGTTAGCAACTGCACGAAGATCACAGTAACAGGGATAG 1185
||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1023 TTTTGGGATTGAAGGTTCTAAAGGTGAGCAACTGCACAAAGATCACAGTAACAGGGATAG 1082
Query 1186 GCAAGCTTTTGGACAAATGCAGTTCCCTGGAGTATATAGATGTAAGGTCTCTTCCACATG 1245
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1083 GCAAGCTTTTGGACAAATGCAGTTCCTTGGAGTATCTAGATGTAAGGTCTCTTCCACATG 1142
Query 1246 TGACAGAAGTGAGATGCAGTGAAGCTGGTTTGGAGTTCCCAAAATGTTGTAAAGTTAACT 1305
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1143 TGACAGAAGTGAGATGCAGTGAAGCTGGTTTGGAGTTCCCCAAATGTTGTAAAGTTAACT 1202
Query 1306 TTTCAGGTAGTTTAACCGAGCCAGATGTTCTGCTTTGATCGTTGCTGTTGGGATCT 1361
|||| || |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1203 TTTCGGGAAGTTTAACCGAGCCAGATGTTCTGCTTTGATCATTGATGTTGGGATCT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62963174985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5