BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23350.1 Length=1135 Score E Sequences producing significant alignments: (Bits) Value Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1 935 0.0 Ahg941861 jgi|Araly1|941861|scaffold_602405.1 900 0.0 Ahg941862 jgi|Araly1|941862|scaffold_602406.1 889 0.0 Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1 409 3e-113 > Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1 Length=757 Score = 935 bits (506), Expect = 0.0 Identities = 608/658 (92%), Gaps = 4/658 (1%) Strand=Plus/Plus Query 187 ATGACACTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCAGCCAAGACTGATACG 246 |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60 Query 247 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCACCAAATCCCAACTTCTTCAAAG 306 ||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120 Query 307 -GTT-TCATATTTGACAGGCAAAGGAAAATCGATGCTGCGAAAGAAGAAAACCGATAGCT 364 || || | ||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 121 AATTCTC-T-TTTAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCT 178 Query 365 TCACAAACGGAGCTAGAGATCAGGACAAACTAGGACCAAAGCTAACTGAAACAGTCAAGA 424 |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| Sbjct 179 TCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGA 238 Query 425 GAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATTTATAAGC 484 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 239 GAAAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGC 298 Query 485 GACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGGCGTACCAATGCTATCTATCCA 544 ||||||||||||||||| || | |||||||| |||||||| || ||||| || ||||| | Sbjct 299 GACTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGA 358 Query 545 CAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCATCAAAGAAGATTGCATTTTGCA 604 |||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| |||| Sbjct 359 CAACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCA 418 Query 605 GTGAAAGATCGATCAAGGTTGCTTCTCCTCAAGGAGTTCTCAGTAGGGTTCACTACAAAG 664 | ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| Sbjct 419 GCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAG 478 Query 665 TCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAGTCAGAACACAAAGAAGCCAT 724 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 479 TTTCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCAT 538 Query 725 CTCAAAAGTACCTTGAAATAGTCACAATCGATAACTTCGACTTCTGGTTCATGGGATTCG 784 ||||||||||||||||| | ||||| |||| ||| |||||||||||||||||||| | Sbjct 539 CTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTTG 598 Query 785 TGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCGCTAAACAATGATGAGCAATA 842 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 599 TGAGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCTAAACAATGATGAGCAATA 656 > Ahg941861 jgi|Araly1|941861|scaffold_602405.1 Length=698 Score = 900 bits (487), Expect = 0.0 Identities = 620/684 (91%), Gaps = 10/684 (1%) Strand=Plus/Plus Query 167 TCACTACTCAATCCTCCAAGATGACACTGAGCAGAGTTCACCAACAAGTTATTGCATTTC 226 |||| |||||| |||||||||||||| |||| |||||||||||||||| |||||||||| Sbjct 1 TCACCACTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTC 60 Query 227 CTGCAGC-CAAGACTGATACGATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285 |||| | ||| |||| | || |||||||||||||| ||||||||||||||||| | | Sbjct 61 CTGC-CCTCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTC 119 Query 286 CAAATCCCAACTTCTTCAAAGGTTTCATATT-TGA-CAGGCAAAGGAAAATCGAT-GCTG 342 ||||||||||||||||||||| |||| | || | | ||||||||||||||||||| || | Sbjct 120 CAAATCCCAACTTCTTCAAAGTTTTC-T-TTATTATCAGGCAAAGGAAAATCGATGGC-G 176 Query 343 CGAAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAACTAGGACCA 402 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 177 CGAAAGAAGAAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCA 236 Query 403 AAGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGA 462 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 AAGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGA 296 Query 463 GGCTTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAG 522 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GGCCTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAG 356 Query 523 GCGTACCAATGCTATCTATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCA 582 ||||||||||| || ||||| ||||| | |||| ||||||| ||||| |||||||||||| Sbjct 357 GCGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCA 416 Query 583 TCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTG-CTTCTCCTCAAGGAGT 641 ||||||||||| ||||| ||||| ||||||||||||||||| | |||||||||| |||| Sbjct 417 TCAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGT-GACTTCTCCTCAGGGAGA 475 Query 642 TCTCAGTAGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCA 701 ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 476 TCTTACTAGGGTTCACTACAAAGTCTCAATCCCGCTGTGCAAGATCAATGGAGTGAACCA 535 Query 702 GAGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGATAACTT 761 |||||||||||||||||||| ||||||||||||||||||| | ||||| |||| ||| Sbjct 536 GAGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTT 595 Query 762 CGACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGC 821 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| Sbjct 596 TGACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGC 655 Query 822 GCTAAACAATGATGAGCAATAAAC 845 | ||||||||||||| |||||||| Sbjct 656 GTTAAACAATGATGAACAATAAAC 679 > Ahg941862 jgi|Araly1|941862|scaffold_602406.1 Length=700 Score = 889 bits (481), Expect = 0.0 Identities = 603/662 (91%), Gaps = 8/662 (1%) Strand=Plus/Plus Query 167 TCACTACTCAATCCTCCAAGATGACACTGAGCAGA-GTTCACCAACAAGTTATTGCATTT 225 |||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||||| Sbjct 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59 Query 226 CCTGCAGCCAAGACTGATACGATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285 ||||| | ||||||| | || || ||||||||||||| ||||||||||||||| | | | Sbjct 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119 Query 286 CAAATCCCAACTTCTTCAAAGGTTTCATATT-TGACAGGCAAAGGAAAATCGATGCTGCG 344 ||||||||||||||||||||| |||| | || | ||| |||||||||||||||||||||| Sbjct 120 CAAATCCCAACTTCTTCAAAGTTTTC-TTTTCTAACAAGCAAAGGAAAATCGATGCTGCG 178 Query 345 AAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAACTAGGACCAA 403 |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| Sbjct 179 AAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAA 237 Query 404 AGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 463 | ||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 238 AACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAG 297 Query 464 GCTTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGG 523 ||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 298 GCTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGA 357 Query 524 CGTACCAATGCTATC-TATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCA 582 |||||||||| || | |||| ||||| |||||||||||||| ||||| |||||||||||| Sbjct 358 CGTACCAATGTTA-CTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCA 416 Query 583 TCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTGCTTCTCCTCAAGGAGTT 642 ||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||| | Sbjct 417 TCAAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGAT 476 Query 643 CTCAGTAGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAG 702 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 CTCACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAG 536 Query 703 AGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGATAACTTC 762 |||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||| Sbjct 537 AGTCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTT 596 Query 763 GACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCG 822 ||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||| Sbjct 597 GACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCG 656 Query 823 CT 824 || Sbjct 657 CT 658 > Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1 Length=848 Score = 409 bits (221), Expect = 3e-113 Identities = 521/663 (79%), Gaps = 32/663 (5%) Strand=Plus/Plus Query 171 TACTCAATCCTC-CAAGATG-ACACTGAGCAGAGTTCACCAACAAGTTATT-GCATTTCC 227 ||||| || ||| |||||| ||| ||||||||||| |||||||||| ||| | |||||| Sbjct 22 TACTCCATTCTCTAAAGATGAACA-TGAGCAGAGTTGACCAACAAGTCATTAG-ATTTCC 79 Query 228 TGCAGCCAAGACTGA-TACG-ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285 ||| | |||||| | | || || ||||||| ||||| || || || || ||||| | Sbjct 80 TGCGGGGAAGACT-ACTCCGTTTG-GTTACTTACCTGATCCGGCCTCAATTAACAAGTTC 137 Query 286 CAAATCCCAACTTCTTCAAAGGTTTCATATTTG-AC-AGGCAAAGGAAAATCGATGCTGC 343 | | | | ||||||| || | | || || || | |||| ||||||||||| || Sbjct 138 CGAGTTTCGGCTTCTTCCAA-G----AAATCTGAACAAAGCAACGGAAAATCGATTCT-T 191 Query 344 GAAA-GAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAACTAGGACC 401 ||| ||||||||||||| | ||||| || ||||||||||| || || ||| ||| ||| Sbjct 192 AAAAGGAAGAAAACCGATGGTTTCACCAATGGAGCTAGAGACCA-GAGCAAGCTAAAACC 250 Query 402 AAAGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAG-ATCCTTCAAATGG 460 |||||||||||||||||| |||||||||||||| ||||| ||| || || ||||| | | Sbjct 251 AAAGCTAACTGAAACAGTGAAGAGAAAGCTATCTTTGGGCGCT-AGAATTCTTCAGGTTG 309 Query 461 GAGGCTTAGAGAAGAT-TTATAAGCGACTCTTCAAG-GTCTGCGATCAAGAGAAACTCTT 518 |||| ||||||||||| || |||||||| || || ||| | || |||||||| || Sbjct 310 GAGGTTTAGAGAAGATCTT-CAAGCGACT-TTTTAGAGTCAGTGAAGGTGAGAAACTGTT 367 Query 519 CAAGGCGTACCAATGCTATC-TATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCA 577 ||| |||||| || || | | || ||||| |||||||| ||||| ||||| || |||| Sbjct 368 CAAAATGTACCAGTGTTA-CTTGTCGACAACCGCAGGTCCTATCGCCGGCCTTCTATTCA 426 Query 578 TCTCATCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTGCTTCTCCTCAAG 637 |||| || ||||| || || || ||||| || ||||||| ||||| | ||| ||||||| Sbjct 427 TCTCGTCCAAGAAAATGGCGTTCTGCAGCGAGCGATCGATAAAGGTGGATTCCCCTCAAG 486 Query 638 GAGTTC-TCAGT-AGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGT 695 ||| | | | | |||||||||||||||| ||| |||| |||||||||||| | |||| Sbjct 487 GAG-ACATGA-TCCGGGTTCACTACAAAGTATCACTCCCCTTGTGCAAGATCGACAGAGT 544 Query 696 GAACCAGAGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGA 755 |||||||||||||||||||||||| ||||| || |||||||| ||| ||||||| |||| Sbjct 545 GAACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGA 604 Query 756 TAACTTCGACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGA 815 || ||||||||||| ||||||||| |||||||||||||||||||||| || || || Sbjct 605 CGGTTTTGACTTCTGGTTTATGGGATTCATGAGCTACCAGAAAGCTTTCAATTGCCTTGA 664 Query 816 GAA 818 ||| Sbjct 665 GAA 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42316437870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5