BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23350.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1 935 0.0
Ahg941861 jgi|Araly1|941861|scaffold_602405.1 900 0.0
Ahg941862 jgi|Araly1|941862|scaffold_602406.1 889 0.0
Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1 409 3e-113
> Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1
Length=757
Score = 935 bits (506), Expect = 0.0
Identities = 608/658 (92%), Gaps = 4/658 (1%)
Strand=Plus/Plus
Query 187 ATGACACTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCAGCCAAGACTGATACG 246
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60
Query 247 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCACCAAATCCCAACTTCTTCAAAG 306
||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120
Query 307 -GTT-TCATATTTGACAGGCAAAGGAAAATCGATGCTGCGAAAGAAGAAAACCGATAGCT 364
|| || | ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 AATTCTC-T-TTTAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCT 178
Query 365 TCACAAACGGAGCTAGAGATCAGGACAAACTAGGACCAAAGCTAACTGAAACAGTCAAGA 424
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 179 TCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGA 238
Query 425 GAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATTTATAAGC 484
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 GAAAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGC 298
Query 485 GACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGGCGTACCAATGCTATCTATCCA 544
||||||||||||||||| || | |||||||| |||||||| || ||||| || ||||| |
Sbjct 299 GACTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGA 358
Query 545 CAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCATCAAAGAAGATTGCATTTTGCA 604
|||| ||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||
Sbjct 359 CAACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCA 418
Query 605 GTGAAAGATCGATCAAGGTTGCTTCTCCTCAAGGAGTTCTCAGTAGGGTTCACTACAAAG 664
| ||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 419 GCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAG 478
Query 665 TCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAGTCAGAACACAAAGAAGCCAT 724
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TTTCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCAT 538
Query 725 CTCAAAAGTACCTTGAAATAGTCACAATCGATAACTTCGACTTCTGGTTCATGGGATTCG 784
||||||||||||||||| | ||||| |||| ||| |||||||||||||||||||| |
Sbjct 539 CTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTTG 598
Query 785 TGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCGCTAAACAATGATGAGCAATA 842
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 599 TGAGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCTAAACAATGATGAGCAATA 656
> Ahg941861 jgi|Araly1|941861|scaffold_602405.1
Length=698
Score = 900 bits (487), Expect = 0.0
Identities = 620/684 (91%), Gaps = 10/684 (1%)
Strand=Plus/Plus
Query 167 TCACTACTCAATCCTCCAAGATGACACTGAGCAGAGTTCACCAACAAGTTATTGCATTTC 226
|||| |||||| |||||||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 1 TCACCACTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTC 60
Query 227 CTGCAGC-CAAGACTGATACGATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285
|||| | ||| |||| | || |||||||||||||| ||||||||||||||||| | |
Sbjct 61 CTGC-CCTCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTC 119
Query 286 CAAATCCCAACTTCTTCAAAGGTTTCATATT-TGA-CAGGCAAAGGAAAATCGAT-GCTG 342
||||||||||||||||||||| |||| | || | | ||||||||||||||||||| || |
Sbjct 120 CAAATCCCAACTTCTTCAAAGTTTTC-T-TTATTATCAGGCAAAGGAAAATCGATGGC-G 176
Query 343 CGAAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAACTAGGACCA 402
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 177 CGAAAGAAGAAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCA 236
Query 403 AAGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGA 462
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AAGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGA 296
Query 463 GGCTTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAG 522
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGCCTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAG 356
Query 523 GCGTACCAATGCTATCTATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCA 582
||||||||||| || ||||| ||||| | |||| ||||||| ||||| ||||||||||||
Sbjct 357 GCGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCA 416
Query 583 TCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTG-CTTCTCCTCAAGGAGT 641
||||||||||| ||||| ||||| ||||||||||||||||| | |||||||||| ||||
Sbjct 417 TCAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGT-GACTTCTCCTCAGGGAGA 475
Query 642 TCTCAGTAGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCA 701
||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 TCTTACTAGGGTTCACTACAAAGTCTCAATCCCGCTGTGCAAGATCAATGGAGTGAACCA 535
Query 702 GAGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGATAACTT 761
|||||||||||||||||||| ||||||||||||||||||| | ||||| |||| |||
Sbjct 536 GAGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTT 595
Query 762 CGACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGC 821
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 596 TGACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGC 655
Query 822 GCTAAACAATGATGAGCAATAAAC 845
| ||||||||||||| ||||||||
Sbjct 656 GTTAAACAATGATGAACAATAAAC 679
> Ahg941862 jgi|Araly1|941862|scaffold_602406.1
Length=700
Score = 889 bits (481), Expect = 0.0
Identities = 603/662 (91%), Gaps = 8/662 (1%)
Strand=Plus/Plus
Query 167 TCACTACTCAATCCTCCAAGATGACACTGAGCAGA-GTTCACCAACAAGTTATTGCATTT 225
|||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||
Sbjct 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59
Query 226 CCTGCAGCCAAGACTGATACGATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285
||||| | ||||||| | || || ||||||||||||| ||||||||||||||| | | |
Sbjct 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119
Query 286 CAAATCCCAACTTCTTCAAAGGTTTCATATT-TGACAGGCAAAGGAAAATCGATGCTGCG 344
||||||||||||||||||||| |||| | || | ||| ||||||||||||||||||||||
Sbjct 120 CAAATCCCAACTTCTTCAAAGTTTTC-TTTTCTAACAAGCAAAGGAAAATCGATGCTGCG 178
Query 345 AAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAACTAGGACCAA 403
|||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 179 AAAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAA 237
Query 404 AGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 463
| ||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 238 AACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAG 297
Query 464 GCTTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGG 523
||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 298 GCTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGA 357
Query 524 CGTACCAATGCTATC-TATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCATCTCA 582
|||||||||| || | |||| ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 358 CGTACCAATGTTA-CTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCA 416
Query 583 TCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTGCTTCTCCTCAAGGAGTT 642
||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||| |
Sbjct 417 TCAAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGAT 476
Query 643 CTCAGTAGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAG 702
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAG 536
Query 703 AGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGATAACTTC 762
|||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||
Sbjct 537 AGTCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTT 596
Query 763 GACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGAGAAAGCG 822
||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |||||
Sbjct 597 GACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCG 656
Query 823 CT 824
||
Sbjct 657 CT 658
> Ahg487669 jgi|Araly1|487669|fgenesh2_kg.6__803__AT5G08350.1
Length=848
Score = 409 bits (221), Expect = 3e-113
Identities = 521/663 (79%), Gaps = 32/663 (5%)
Strand=Plus/Plus
Query 171 TACTCAATCCTC-CAAGATG-ACACTGAGCAGAGTTCACCAACAAGTTATT-GCATTTCC 227
||||| || ||| |||||| ||| ||||||||||| |||||||||| ||| | ||||||
Sbjct 22 TACTCCATTCTCTAAAGATGAACA-TGAGCAGAGTTGACCAACAAGTCATTAG-ATTTCC 79
Query 228 TGCAGCCAAGACTGA-TACG-ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAACCAC 285
||| | |||||| | | || || ||||||| ||||| || || || || ||||| |
Sbjct 80 TGCGGGGAAGACT-ACTCCGTTTG-GTTACTTACCTGATCCGGCCTCAATTAACAAGTTC 137
Query 286 CAAATCCCAACTTCTTCAAAGGTTTCATATTTG-AC-AGGCAAAGGAAAATCGATGCTGC 343
| | | | ||||||| || | | || || || | |||| ||||||||||| ||
Sbjct 138 CGAGTTTCGGCTTCTTCCAA-G----AAATCTGAACAAAGCAACGGAAAATCGATTCT-T 191
Query 344 GAAA-GAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCAGGA-CAAACTAGGACC 401
||| ||||||||||||| | ||||| || ||||||||||| || || ||| ||| |||
Sbjct 192 AAAAGGAAGAAAACCGATGGTTTCACCAATGGAGCTAGAGACCA-GAGCAAGCTAAAACC 250
Query 402 AAAGCTAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAG-ATCCTTCAAATGG 460
|||||||||||||||||| |||||||||||||| ||||| ||| || || ||||| | |
Sbjct 251 AAAGCTAACTGAAACAGTGAAGAGAAAGCTATCTTTGGGCGCT-AGAATTCTTCAGGTTG 309
Query 461 GAGGCTTAGAGAAGAT-TTATAAGCGACTCTTCAAG-GTCTGCGATCAAGAGAAACTCTT 518
|||| ||||||||||| || |||||||| || || ||| | || |||||||| ||
Sbjct 310 GAGGTTTAGAGAAGATCTT-CAAGCGACT-TTTTAGAGTCAGTGAAGGTGAGAAACTGTT 367
Query 519 CAAGGCGTACCAATGCTATC-TATCCACAACAGCAGGTCCCATCGCAGGCCTCCTCTTCA 577
||| |||||| || || | | || ||||| |||||||| ||||| ||||| || ||||
Sbjct 368 CAAAATGTACCAGTGTTA-CTTGTCGACAACCGCAGGTCCTATCGCCGGCCTTCTATTCA 426
Query 578 TCTCATCAAAGAAGATTGCATTTTGCAGTGAAAGATCGATCAAGGTTGCTTCTCCTCAAG 637
|||| || ||||| || || || ||||| || ||||||| ||||| | ||| |||||||
Sbjct 427 TCTCGTCCAAGAAAATGGCGTTCTGCAGCGAGCGATCGATAAAGGTGGATTCCCCTCAAG 486
Query 638 GAGTTC-TCAGT-AGGGTTCACTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGT 695
||| | | | | |||||||||||||||| ||| |||| |||||||||||| | ||||
Sbjct 487 GAG-ACATGA-TCCGGGTTCACTACAAAGTATCACTCCCCTTGTGCAAGATCGACAGAGT 544
Query 696 GAACCAGAGTCAGAACACAAAGAAGCCATCTCAAAAGTACCTTGAAATAGTCACAATCGA 755
|||||||||||||||||||||||| ||||| || |||||||| ||| ||||||| ||||
Sbjct 545 GAACCAGAGTCAGAACACAAAGAAACCATCACAGAAGTACCTAGAAGTAGTCACGGTCGA 604
Query 756 TAACTTCGACTTCTGGTTCATGGGATTCGTGAGCTACCAGAAAGCTTTCAACTGTCTCGA 815
|| ||||||||||| ||||||||| |||||||||||||||||||||| || || ||
Sbjct 605 CGGTTTTGACTTCTGGTTTATGGGATTCATGAGCTACCAGAAAGCTTTCAATTGCCTTGA 664
Query 816 GAA 818
|||
Sbjct 665 GAA 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5