BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23370.1
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941862 jgi|Araly1|941862|scaffold_602406.1 1083 0.0
Ahg941861 jgi|Araly1|941861|scaffold_602405.1 907 0.0
Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1 885 0.0
> Ahg941862 jgi|Araly1|941862|scaffold_602406.1
Length=700
Score = 1083 bits (586), Expect = 0.0
Identities = 665/703 (95%), Gaps = 6/703 (1%)
Strand=Plus/Plus
Query 51 TCACTACTCAATTCTCCAAGATGACATTGAGCAGA-GTTCACCAACAACTCATTACATTT 109
|||||||||||| |||||||||||||||||||| | |||||||||||| ||||| |||||
Sbjct 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59
Query 110 CCTGCCGTCAAGACTTCTCCGGCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTT 169
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119
Query 170 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAGGCAAAGGAAAATCGATGCTACGA 229
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 120 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAAGCAAAGGAAAATCGATGCTGCGA 179
Query 230 AAGAAGAAAAACGATAGCTTCACAAACGGAGTTAGAGATCAGGA-CAAGTTAGGACCAAA 288
|||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 180 AAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAAA 238
Query 289 GCTAACCGAAACAGTCAAGAGAAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAGG 348
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 239 ACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAGG 298
Query 349 CTTAGAGAAGATCTATAAACGACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGGC 408
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 299 CTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGAC 358
Query 409 GTACCAATGCTACCTATCCACAACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCATC 468
||||||||| ||| |||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 359 GTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCATC 418
Query 469 AAAGAAAATTGCATTCTGCAGCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGCT 528
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 419 AAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGATCT 478
Query 529 CAATAGGGTTCACTACAAAGTCTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAG 588
|| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 CACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAG 538
Query 589 TCAAAACACAACGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTTGA 648
||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 539 TCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTTGA 598
Query 649 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 658
Query 709 TTCTCTTAGCTTC-AAGCAATGATAAGCCAAGATATATTGCTT 750
||||||||||||| || |||||||||||||| |||||||||||
Sbjct 659 TTCTCTTAGCTTCGAA-CAATGATAAGCCAATATATATTGCTT 700
> Ahg941861 jgi|Araly1|941861|scaffold_602405.1
Length=698
Score = 907 bits (491), Expect = 0.0
Identities = 605/660 (92%), Gaps = 8/660 (1%)
Strand=Plus/Plus
Query 51 TCACTACTCAATTCTCCAAGATGACATTGAGCAGAGTTCACCAACAACTCATTACATTTC 110
|||| |||||| |||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1 TCACCACTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTC 60
Query 111 CTGCCGTCAAGACTTCTCCGGCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTC 170
||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 61 CTGCCCTCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTCC 120
Query 171 AAATCCCAACTTCTTCAAAGTTTTCTTT-TCTAACAGGCAAAGGAAAATCGAT-GCTACG 228
|||||||||||||||||||||||||||| | || ||||||||||||||||||| || ||
Sbjct 121 AAATCCCAACTTCTTCAAAGTTTTCTTTAT-TATCAGGCAAAGGAAAATCGATGGC-GCG 178
Query 229 AAAGAAGAAAAAC-GATAGCTTCACAAACGGAGTTAGAGATCAGGACAAGTTAGGACCAA 287
||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 AAAGAAG-AAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCAA 237
Query 288 AGCTAACCGAAACAGTCAAGAGAAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAG 347
|| |||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 238 AGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 297
Query 348 GCTTAGAGAAGATCTATAAACGACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGG 407
|| |||||||||| ||||| |||||||| |||||| ||||| ||||||||||||||||||
Sbjct 298 GCCTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGG 357
Query 408 CGTACCAATGCTACCTATCCACAACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCAT 467
|||||||||| |||||||| ||||||| |||| ||||||| |||||||||||||| ||||
Sbjct 358 CGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCAT 417
Query 468 CAAAGAAAATTGCATTCTGCAGCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGC 527
||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 418 CAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGTGACTTCTCCTCAGGGAGATC 477
Query 528 TCAATAGGGTTCACTACAAAGTCTCAATCCC-CTTGTGCAAGATCAATGGAGTGAACCAG 586
| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 478 TTACTAGGGTTCACTACAAAGTCTCAATCCCGC-TGTGCAAGATCAATGGAGTGAACCAG 536
Query 587 AGTCAAAACACAACGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTT 646
||||| ||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 537 AGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTT 596
Query 647 GACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCG 706
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 597 GACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGCG 656
> Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1
Length=757
Score = 885 bits (479), Expect = 0.0
Identities = 587/640 (92%), Gaps = 4/640 (1%)
Strand=Plus/Plus
Query 71 ATGACATTGAGCAGAGTTCACCAACAACTCATTACATTTCCTGCCGTCAAGACTTCTCCG 130
||||||||||||||||||||||||||| | ||| |||||||||| | ||||||| || ||
Sbjct 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60
Query 131 GCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTCAAATCCCAACTTCTTCAAAG 190
| ||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120
Query 191 TTTTCT-TTTCTAACAGGCAAAGGAAAATCGATGCTACGAAAGAAGAAAAACGATAGCTT 249
|||| ||| ||||||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 121 AATTCTCTTT-TAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCTT 179
Query 250 CACAAACGGAGTTAGAGATCAGGACAAGTTAGGACCAAAGCTAACCGAAACAGTCAAGAG 309
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 CACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGAG 239
Query 310 AAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAACG 369
||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 240 AAAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGCG 299
Query 370 ACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGGCGTACCAATGCTACCTATCCAC 429
|||||| |||||| || |||| |||||||| |||||||| || ||||| |||||||| ||
Sbjct 300 ACTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGAC 359
Query 430 AACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCATCAAAGAAAATTGCATTCTGCAG 489
||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 AACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCAG 419
Query 490 CGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGCTCAATAGGGTTCACTACAAAGT 549
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 CGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAGT 479
Query 550 CTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAGTCAAAACACAACGAAGCCATC 609
|||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 480 TTCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCATC 539
Query 610 TCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTCT- 668
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 540 TCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATT-TG 598
Query 669 TGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 708
|||||||||| ||||||||||| || ||||||||||||||
Sbjct 599 TGAGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCT 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5