BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23370.1 Length=941 Score E Sequences producing significant alignments: (Bits) Value Ahg941862 jgi|Araly1|941862|scaffold_602406.1 1083 0.0 Ahg941861 jgi|Araly1|941861|scaffold_602405.1 907 0.0 Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1 885 0.0 > Ahg941862 jgi|Araly1|941862|scaffold_602406.1 Length=700 Score = 1083 bits (586), Expect = 0.0 Identities = 665/703 (95%), Gaps = 6/703 (1%) Strand=Plus/Plus Query 51 TCACTACTCAATTCTCCAAGATGACATTGAGCAGA-GTTCACCAACAACTCATTACATTT 109 |||||||||||| |||||||||||||||||||| | |||||||||||| ||||| ||||| Sbjct 1 TCACTACTCAATCCTCCAAGATGACATTGAGCA-ATGTTCACCAACAAGTCATTGCATTT 59 Query 110 CCTGCCGTCAAGACTTCTCCGGCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTT 169 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 60 CCTGCCGTCAAGACTTCTCCGGTGGGTTACTTGCCTGATCCAGCTTCCATCAACGAGCTC 119 Query 170 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAGGCAAAGGAAAATCGATGCTACGA 229 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 120 CAAATCCCAACTTCTTCAAAGTTTTCTTTTCTAACAAGCAAAGGAAAATCGATGCTGCGA 179 Query 230 AAGAAGAAAAACGATAGCTTCACAAACGGAGTTAGAGATCAGGA-CAAGTTAGGACCAAA 288 |||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||| Sbjct 180 AAGAAGAAAACCGATAGCTTCACAAACGGAGCTAGAGATCA-GAGCAAGTTAGGACCAAA 238 Query 289 GCTAACCGAAACAGTCAAGAGAAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAGG 348 ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| Sbjct 239 ACTAACCGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAGGATCCTTCAAGTGGGAGG 298 Query 349 CTTAGAGAAGATCTATAAACGACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGGC 408 |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | Sbjct 299 CTTAGAGAAGATCTATAAGCGACTCTTTAAGGTCTGCGATGAAGAGAAACTCTTCAAGAC 358 Query 409 GTACCAATGCTACCTATCCACAACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCATC 468 ||||||||| ||| |||| |||||||||||||||||||| |||||||||||||| ||||| Sbjct 359 GTACCAATGTTACTTATCAACAACCGCAGGTCCCATCGCGGGCCTACTCTTCATCTCATC 418 Query 469 AAAGAAAATTGCATTCTGCAGCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGCT 528 |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 419 AAAGAAGATTGCATTCTGCAGCGAGAGATCGATAAAGGTGGCTTCTCCTCAAGGAGATCT 478 Query 529 CAATAGGGTTCACTACAAAGTCTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAG 588 || ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 479 CACTAGGGTTCATTACAAAGTCTCAATCCCATTGTGCAAGATCAATGGAGTGAACCAGAG 538 Query 589 TCAAAACACAACGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTTGA 648 ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 539 TCAGAACACAAAGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACAGTCGACGGCTTTGA 598 Query 649 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 658 Query 709 TTCTCTTAGCTTC-AAGCAATGATAAGCCAAGATATATTGCTT 750 ||||||||||||| || |||||||||||||| ||||||||||| Sbjct 659 TTCTCTTAGCTTCGAA-CAATGATAAGCCAATATATATTGCTT 700 > Ahg941861 jgi|Araly1|941861|scaffold_602405.1 Length=698 Score = 907 bits (491), Expect = 0.0 Identities = 605/660 (92%), Gaps = 8/660 (1%) Strand=Plus/Plus Query 51 TCACTACTCAATTCTCCAAGATGACATTGAGCAGAGTTCACCAACAACTCATTACATTTC 110 |||| |||||| |||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1 TCACCACTCAACCCTCCAAGATGACATTGAGTGGAGTTCACCAACAAGTCATTGCATTTC 60 Query 111 CTGCCGTCAAGACTTCTCCGGCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTC 170 ||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 61 CTGCCCTCAATACTGCTCCGGCCAGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTCC 120 Query 171 AAATCCCAACTTCTTCAAAGTTTTCTTT-TCTAACAGGCAAAGGAAAATCGAT-GCTACG 228 |||||||||||||||||||||||||||| | || ||||||||||||||||||| || || Sbjct 121 AAATCCCAACTTCTTCAAAGTTTTCTTTAT-TATCAGGCAAAGGAAAATCGATGGC-GCG 178 Query 229 AAAGAAGAAAAAC-GATAGCTTCACAAACGGAGTTAGAGATCAGGACAAGTTAGGACCAA 287 ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 179 AAAGAAG-AAAACTGATAGCTTCACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCAA 237 Query 288 AGCTAACCGAAACAGTCAAGAGAAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAG 347 || |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||| Sbjct 238 AGATAACTGAAACAGTCAAGAGAAAGCTATCCTTGGGAGCTAAGATCCTTCAAATGGGAG 297 Query 348 GCTTAGAGAAGATCTATAAACGACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGG 407 || |||||||||| ||||| |||||||| |||||| ||||| |||||||||||||||||| Sbjct 298 GCCTAGAGAAGATTTATAAGCGACTCTTCAAGGTCTGCGATCAAGAGAAACTCTTCAAGG 357 Query 408 CGTACCAATGCTACCTATCCACAACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCAT 467 |||||||||| |||||||| ||||||| |||| ||||||| |||||||||||||| |||| Sbjct 358 CGTACCAATGTTACCTATCGACAACCGAAGGTTCCATCGCGGGCCTACTCTTCATCTCAT 417 Query 468 CAAAGAAAATTGCATTCTGCAGCGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGC 527 ||||||| || |||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct 418 CAAAGAAGATAGCATTCTGCAGCGAAAGATCGATCAAGGTGACTTCTCCTCAGGGAGATC 477 Query 528 TCAATAGGGTTCACTACAAAGTCTCAATCCC-CTTGTGCAAGATCAATGGAGTGAACCAG 586 | | ||||||||||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 478 TTACTAGGGTTCACTACAAAGTCTCAATCCCGC-TGTGCAAGATCAATGGAGTGAACCAG 536 Query 587 AGTCAAAACACAACGAAGCCATCTCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTT 646 ||||| ||||||| ||||| |||||| |||||||||||||| |||||||||||||||||| Sbjct 537 AGTCAGAACACAAAGAAGCTATCTCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTT 596 Query 647 GACTTCTGGTTCATGGGATTCTTGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCG 706 ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| Sbjct 597 GACTTCTGGTTCATGGGATTCGTGAGCTACCAAAAAGCTTTCAATTGTCTCGAGCAAGCG 656 > Ahg489196 jgi|Araly1|489196|fgenesh2_kg.6__2330__AT5G23360.1 Length=757 Score = 885 bits (479), Expect = 0.0 Identities = 587/640 (92%), Gaps = 4/640 (1%) Strand=Plus/Plus Query 71 ATGACATTGAGCAGAGTTCACCAACAACTCATTACATTTCCTGCCGTCAAGACTTCTCCG 130 ||||||||||||||||||||||||||| | ||| |||||||||| | ||||||| || || Sbjct 1 ATGACATTGAGCAGAGTTCACCAACAAGTTATTGCATTTCCTGCTGCCAAGACTGCTACG 60 Query 131 GCGGGTTACTTGCCTGATCCAGCTTCCATCAACAAGCTTCAAATCCCAACTTCTTCAAAG 190 | ||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| Sbjct 61 ATGAGTTACTTGCCTGACCCAGCTTCCATCAACAAGCTCCAACTCCCAACTTCTTCAAAG 120 Query 191 TTTTCT-TTTCTAACAGGCAAAGGAAAATCGATGCTACGAAAGAAGAAAAACGATAGCTT 249 |||| ||| ||||||||||||||||||||||||| || |||||||||| ||||||||| Sbjct 121 AATTCTCTTT-TAACAGGCAAAGGAAAATCGATGCTGCGGAAGAAGAAAACCGATAGCTT 179 Query 250 CACAAACGGAGTTAGAGATCAGGACAAGTTAGGACCAAAGCTAACCGAAACAGTCAAGAG 309 ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 180 CACAAACGGAGCTAGAGATCAGGACAAGTTAGGACCCAAGCTAACTGAAACAGTCAAGAG 239 Query 310 AAAACTATCCTTGGGAGCTAGGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAACG 369 ||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 240 AAAGCTATCTTTGGGAGCTAAGATCCTTCAAATGGGAGGCTTAGAGAAGATCTATAAGCG 299 Query 370 ACTCTTTAAGGTCAGCGATGAAGAGAAACTCTTCAAGGCGTACCAATGCTACCTATCCAC 429 |||||| |||||| || |||| |||||||| |||||||| || ||||| |||||||| || Sbjct 300 ACTCTTCAAGGTCTGCAATGATGAGAAACTGTTCAAGGCATATCAATGTTACCTATCGAC 359 Query 430 AACCGCAGGTCCCATCGCTGGCCTACTCTTCATATCATCAAAGAAAATTGCATTCTGCAG 489 ||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 360 AACTGCAGGTCCCATCGGGGGCCTACTCTTCATCTCATCAAAGAAAATTGCATTCTGCAG 419 Query 490 CGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGAGCTCAATAGGGTTCACTACAAAGT 549 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 420 CGAAAGATCGATCAAGGTGGCTTCTCCTCAAGGAGATCTCAATAGGGTTCACTACAAAGT 479 Query 550 CTCAATCCCCTTGTGCAAGATCAATGGAGTGAACCAGAGTCAAAACACAACGAAGCCATC 609 |||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||||||| Sbjct 480 TTCAATCCCATTGTGCAAGATCAATGGAGTAAACCAGAGTCAGAACACAAAGAAGCCATC 539 Query 610 TCAGAAGTACCTTGAAGTAGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATTCT- 668 ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 540 TCAAAAGTACCTTGAAGTTGTCACGGTCGACGGCTTTGACTTCTGGTTCATGGGATT-TG 598 Query 669 TGAGCTACCAAAAAGCTTTCAACTGCCTCGAGCAAGCGCT 708 |||||||||| ||||||||||| || |||||||||||||| Sbjct 599 TGAGCTACCAGAAAGCTTTCAATTGTCTCGAGCAAGCGCT 638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34920591972 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5