BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23380.1
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489199 jgi|Araly1|489199|fgenesh2_kg.6__2333__AT5G23380.1 1201 0.0
> Ahg489199 jgi|Araly1|489199|fgenesh2_kg.6__2333__AT5G23380.1
Length=1034
Score = 1201 bits (650), Expect = 0.0
Identities = 881/991 (89%), Gaps = 22/991 (2%)
Strand=Plus/Plus
Query 1 ATGAATGGGAGAGTTAGAACTAATTTTGAGAGGTTTCTCGAATGTTCATCTCCACGTGTC 60
|||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTGGGAGGGGTAAAACTAATTTTGAGAGGTTTCTCGAATGTTCATCTCCACGTGTC 60
Query 61 CCGATTCAATTTTATACTCAG-GCA-AGGGGATCGTCTTCTTCTTCACCAATAGCTTTGG 118
|||||||||| |||||||||| | | |||| |||||||||||| ||| || ||||||| |
Sbjct 61 CCGATTCAATATTATACTCAGAG-AGAGGG-ATCGTCTTCTTCATCATCAGTAGCTTTAG 118
Query 119 GAGCTATTGAAGAAGAAGAAGTGAGAAAGCCTCGCATCGTCCTCA-ATGATATTTGGTCT 177
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 119 GAGCTATTGAAGAAGAAGAAGTGAGAAAGCCTCGCATCGTCCTCGGA-GATATTTGGTCT 177
Query 178 GCCTGTAAAAACTGGAGCACTGTTGGTATCGAAGTCCCTCTTTCGCTGGAAAACTTCGAC 237
|||||| |||||||||||| |||| || |||| ||||||||||||||||||||||||
Sbjct 178 GCCTGTGCCGACTGGAGCACTGATGGTCTCCAAGTTCCTCTTTCGCTGGAAAACTTCGAC 237
Query 238 TCCGATGTTAAACAGT-ACTATAATCCTTCACTCTCCGCCATTCAGATCTTTACCATCAA 296
||||| |||||||| | ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 238 TCCGACGTTAAACA-TCACTATCTTCCTTCACTCTCCGCCATTCAGATCTTCACCATCAA 296
Query 297 ACCCTTCTCTGATGATTCAAGGAGCTCTGCCATTGGGATAGATGGTACAGAGACAGGATC 356
||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 297 ACCCTTCCCTGATGATTCAAGGAGCTCTGCCATTGAGATAGATGCTACAGAGACAGGCTC 356
Query 357 TGCTATAAC-TGACTCTGACAGCAACGGCAAGCTTCAGTGTTT-GGATGCTGGTGACTTG 414
||||| ||| ||| |||||||||||| |||| || || ||| ||||| | |||||
Sbjct 357 TGCTA-AACCTGAGTCTGACAGCAACTTTAAGCCTCGGT-TTTCGGATGATC---ACTTG 411
Query 415 GGCTACCTTTATTTTCAATATAATGAGGTAGA-AAGGCCATTTGATAGGTTTCCTCTCAC 473
|| |||||||||||||||||| ||||| || | || ||||||| | ||| | |||| ||
Sbjct 412 GGGTACCTTTATTTTCAATATGATGAGATA-ACAATGCCATTTAAGAGGACTACTCTAAC 470
Query 474 TTTCAAGATGGCTGACCTAGCTGAGGAGCACACTGGACTGTCTAGTCTGACGAGTTCAGA 533
||||||||||| || |||||| | |||||||||||||||||||| |||||||||||||
Sbjct 471 TTTCAAGATGGAGGATTTAGCTGCGCAGCACACTGGACTGTCTAGTTTGACGAGTTCAGA 530
Query 534 TCTTTCTCCAAATAGCTGGATTTCGATAGCTTGGTATCCCATTTATCCAATTCCACCAGT 593
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 531 TCTTTCTCCATATAGCTGGATTTCGATAGCTTGGTATCCCATTTATCCAATTCCATCAGT 590
Query 594 GATAGGCGTGGACGGGATATCTGCCGCTTTCCTAACGTACCATTTATTGAAGCCAAACTT 653
|| | || |||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 591 GAGAA---TGAACGGAATATCTGCCGCTTTCCTAACGTACCATTTATTGACGCCAAACTT 647
Query 654 TCCAGAAACAATTGGTAAGGATGATAAGGGGAATGAACAAGGAGAGTCAAGTACACCAGA 713
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||
Sbjct 648 TCCAGAAACAATTGGTAAAGATGATAAGGGGAATGAACAAGGAGGGTCAAGTACAGCAGA 707
Query 714 AGTTCTACTTCCTCCATTTGGAGCAATGACTTACAAGGCCTTTGGTAACCTGTGGATGAT 773
||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| ||
Sbjct 708 AGTTCTACTTCCTCCATTTGGAGCAGTGACTTACAAGGCCTTTGGTGATATGTGGATCAT 767
Query 774 GCCTGGGACATCAGATTATCAGAACAGAGAGATGAATGAAGAATCTGCTGACTCGTGGCT 833
|||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |||||
Sbjct 768 GCCTGGGACATCAGATTATCAGAAGAGAGAGATGCATGAAGAATCTGCTTCCTCATGGCT 827
Query 834 GAGAAA-ACGCGGCTTCTCCCACAGCGATTTCAACTTCTTTATGTCCCGTAAGTTTTACG 892
| ||| |||||||||||| ||||||||||||| |||||| ||||||| ||||||| |||
Sbjct 828 GC-AAACACGCGGCTTCTCTCACAGCGATTTCAGCTTCTTCATGTCCCATAAGTTTAACG 886
Query 893 GCGGACCCTATTAATGCCATCTTGCAGGTGAAATGCTAAGCCTAACAATGGAGTCTTATC 952
| || ||||| | |||||||||||| |||||||||||||||||| |||||||||||| ||
Sbjct 887 GTGGGCCCTACTGATGCCATCTTGCTGGTGAAATGCTAAGCCTAGCAATGGAGTCTTGTC 946
Query 953 ATCATaaaaaaaCATTTATGCTGTAAAACAT 983
||| || ||||||||| |||||||||||||
Sbjct 947 ATCGTATGAAAACATTTCTGCTGTAAAACAT 977
Score = 91.6 bits (49), Expect = 1e-17
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1053 tctGACTTTGGATTCTGCTGTTCTTTACTTTTGAGGATTATTTTTCTTAAAATTTGTC 1110
|||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 977 TCTGTCTTTGGCTTCTGCTGTTCTTTACTTTTGAGGATTATTTTTCTTTAAATTTGTC 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41363364945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5