BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23390.1
Length=2621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489200 jgi|Araly1|489200|fgenesh2_kg.6__2334__AT5G23390.1 3927 0.0
> Ahg489200 jgi|Araly1|489200|fgenesh2_kg.6__2334__AT5G23390.1
Length=2467
Score = 3927 bits (2126), Expect = 0.0
Identities = 2355/2465 (96%), Gaps = 18/2465 (1%)
Strand=Plus/Plus
Query 134 CGGGAAAGA-AAGGAATCTGAATCGGAGAAGCAATCGAGGTTTACGATTACCAAATTCTG 192
||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 18 CGGGAAAGAGAA-GAATCTGAATCGGAGAAGCAATCTAGGTTTACGATTACC-AATTCTG 75
Query 193 ATCTAATCTGATTAATTGTGGTGATTTCCGATGGAAGAAGACGGTGGTGGCGGCGGTGCG 252
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 76 -TCTGATCTGATTAATTGTGGTGATTTCCGATGGAAGAAGAC---GGTGGCGGCGGTGCG 131
Query 253 AAAGTTGGAATGCTGGAGAATTTCATGAAGACGCATCAGAGTTCTTTGAAATCGTTATTC 312
||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| || |||
Sbjct 132 AAAGTCGGAGTGCTGGAGAATTTCATGAGGACGCAGCAGAGTTCTTTGAAATCCTTGTTC 191
Query 313 CAGAGAAAGAAATCATCCTCTGGTCGTGATGGAGATGCTTCTCCGTCGCCTATCGCTTCC 372
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CAGAGGAAGAAATCGTCCTCTGGTCGTGATGGAGATGCTTCTCCGTCGCCTATCGCTTCC 251
Query 373 CCGAAACCTATTCCGCAGCTCTCTCTTCTCGCCAATTCCGTCGTCTCCCGCTGTTCAAAG 432
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 252 CCGAAACCTATTCCTCAGCTCTCTCTTCTCGCCAATTCCGTCGTCTCACGCTGTTCAAAG 311
Query 433 ATCCTGAACATTCAAACAGAAGATCTGCAGCATCATTTTGATGTAGAGTTGCCTGAGAGT 492
||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 312 ATCCTTAACATTCCAACAGAAGATCTGCAACATCATTTTGATGTAGAGTTGCCTGAGAGT 371
Query 493 GTTAAGCAACTATTGACATATGCAAGGAACTTTTTAGAGTTCTGCTCTTTTCAGGCACTT 552
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GTTAAGCAACTCTTGACATATGCAAGGAACTTTTTAGAGTTCTGCTCTTTTCAGGCACTT 431
Query 553 CATCAAGTGATGAAAAAACCTGATTACTTGAGTGATCAAGAGTTCCGTCAGCTAATGTTT 612
|| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 432 CACCAAGTGATGAAAAAACCTGATTACTTAAGTGATCAAGAGTTCCGTCAGCTATTGTTT 491
Query 613 GACATGATGCTTGCTTGGGAGACTCCCAGTGTCACAAGTGAGCAGGAAAACAAAGATGCA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GACATGATGCTTGCTTGGGAGACTCCCAGTGTCACAAGTGAGCAGGAAAACAAAGATGCA 551
Query 673 GCATCTCCCTCCAAGCAGGACTCAGAGGATGAGGATGGATGGTCGCTATTCTATTCAAGT 732
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 552 GCATCTCCCTCCAAGCAGGACTCAGAGGATGAGGATGGGTGGTCGCTATTCTATTCAAGT 611
Query 733 CCCACTAATATGGCAATGCAGGTTGATGaaaaaaaGTCTGTCGGACAGGAGGCTTTTGCA 792
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 612 CCCACAAATATGGCAATGCAGGTTGATGAAAAAAAGTCTGTAGGACAGGAGGCTTTTGCA 671
Query 793 AGAATTGCTCCGGTTTGTCCTGCCATTGCAGATGCAATAACTGTACATAATCTTTTTGAT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 AGAATTGCTCCGGTTTGTCCTGCCATTGCAGATGCAATAACTGTACATAATCTTTTTGAT 731
Query 853 GCACTAACTAGCTCGTCAGGCCACAGGCTTCATTATATCGTATATGACAAATACCTCCGC 912
||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 732 GCACTGACTAGCTCGTCAGGCCACAGGCTTCATTTTATCGTATATGACAAATACATCCGC 791
Query 913 ACACTTGACAAAATTTTCAAGGCTGCAAAAAGCACTCTAGGACCTTCAGCTGCCAATCTT 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ACACTTGACAAAATTTTCAAGGCTGCAAAAAGCACTCTAGGACCTTCAGCTGCCAATCTT 851
Query 973 CAGCTTGCCAAGGGAGAAATAGTGCTTGATATGGATGGTGCAAATCCTGTTTTACCGGTT 1032
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 852 CAGCTTGCCAAGGGAGAAATAGTGCTTGATATGGATGGTGCAAACCCTGTTTTACCGGTT 911
Query 1033 CTTAAACACGTGGGCATCTCAGCATGGCCTGGTAAACTGACACTTACCAACTGTGCTCTA 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 912 CTTAAACACGTGGGCATCTCAGCATGGCCTGGTAAACTGACACTTACCAACTATGCTCTA 971
Query 1093 TATTTTGATTCAATGGGTGGTGGTGAAAAGCCCATGCGATATGATCTCACTGAAGACACA 1152
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 972 TATTTTGATTCAATGGGTGGTGGTGAAAAGGCCATGCGATATGATCTCACTGAAGACACA 1031
Query 1153 AAACAGGTCATCAAACCTGAGTTGACAGGGCCATTGGGTGCTCGTATATTTGATAAAGCC 1212
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1032 AAACAGGTCATCAAACCTGAGTTAACAGGGCCATTGGGTGCTCGTATATTTGATAAAGCC 1091
Query 1213 ATTATGTATAAATCAATTACAGTACCAGAGCCAGTATTTTTTGAATTTACAGAGTTTAAA 1272
|| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1092 ATCATGTATAAATCAATTATAGTACCAGAGCCAGTATATTTTGAATTCACAGAGTTTAAA 1151
Query 1273 GGCAATGCTCGTCGAGACTACTGGTTGGGAATTTGCCTGGAGATCCTTCGTGTACAATGG 1332
|||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1152 GGCAATGCTCGTCGAGACTACTGGTTGGGAATATGTTTGGAGATCCTTCGCGTACAATGG 1211
Query 1333 TTCATACGAAGATACAACTTTAAAGGGATTCAACGATCAGAAATACTTGCAAGAGCAATC 1392
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1212 TTCATACGAAGATACAACTTTAAAGGGGTTCAACGATCAGAAATACTTGCAAGAGCAATC 1271
Query 1393 CTTGGGATATTCCGGTACCGTGCAATAAGGGAAGCTTTTCAAGTCTTCTCTTCCCAATAC 1452
||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1272 CTTGGCATATTCCGGTATCGTGCAATAAGGGAAGCTTTCCAAGTCTTCTCTTCCCAATAT 1331
Query 1453 AAAACATTGCTTATATTTAACCTGGCAGAAAGTCTCCCCGGCGGAGATATGGTCTTAGAA 1512
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1332 AAAACATTGCTTATATTTAACCTGGCAGAAAGTCTCCCCGGTGGAGATATGGTCTTAGAA 1391
Query 1513 GCTCTGTCCAGCCGTGTCTCTCGCATAACCACTAATGTTGCTTCTGATATCGGTTCTGTT 1572
||||| ||||| ||||||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 1392 GCTCTATCCAGTCGTGTCTCTCGTATAACCACTGATGTCCCTTCTGATGTCGGTTCTGTT 1451
Query 1573 CAGTATATGAAATGGCCCTCAAACTTATCTCCAGTCTCACTCAAATTGCTTGAGCATTTT 1632
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1452 CAGTATATGAAATGGCCCTCAAAATTATCTCCAGTATCACTCAAATTGCTTGAGCATTTT 1511
Query 1633 GGCTTGAATCTAGAAACAGGGACAAATATGGGTGAAGAATTGACAATCGTAGGAGATTTT 1692
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1512 GGCTTGAATCTAGAAACTGGGACAAATATGGGTGAAGAAATGACAATCGTAGGAGATTTT 1571
Query 1693 TGTGTTGGGGAGACGAGTCCATTGGAGATAGCTCTGAAACAGTCAATCCTAGACACAGAC 1752
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 TGTGTTGGAGAGACGAGTCCATTGGAGATAGCTCTGAAACAGTCAATCCTAGACACAGAT 1631
Query 1753 AGAGCTGAAGCTGCTCAGGCGACTGTGGAACAAGTGAAAGTAGAAGGAATTGACACTAAC 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AGAGCTGAAGCTGCTCAGGCGACTGTGGAACAAGTGAAAGTAGAAGGAATTGACACTAAC 1691
Query 1813 GTTGCAGTTATGAAGGAGCTATTGTTACCTTTCATCAAACTAGGCTTGCATATAAATCGC 1872
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1692 GTTGCAGTTATGAAGGAGCTATTGTTACCTTTCATCAAACTAGGCTTGCATATAAATCTC 1751
Query 1873 TTAGCCTATTGGCAAGATCCTTATAAATCAACGGTGTTCATGATCTTGGTCAGCTATATG 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1752 TTAGCCTATTGGCAAGATCCTTATAAATCAACGGTGTTCATGATCTTGGTCAGCTATTTG 1811
Query 1933 ATTATCAGTGGGTGGATCGGTTTCATATTACCGTCAATATTACTCCTAGTAGCTATAGTA 1992
|||||||||| |||||||||||||||| ||||||| |||||| ||||||| |||||||||
Sbjct 1812 ATTATCAGTGAGTGGATCGGTTTCATACTACCGTCCATATTAGTCCTAGTGGCTATAGTA 1871
Query 1993 ATGATGTGGCGTAAGCAATTCAACAAAGGGAAAGAACCAAAAACCGTTCGTGTGAAAGCT 2052
||| ||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct 1872 ATGCTGTGGCGAAAGCAATTCAACAAAGGGAAAGAACCAAAAGCTGTTCGAGTGAAAGCT 1931
Query 2053 CCACCAAGTAAAAACGCGGTGGAGCAGCTTCTCGTACTACAAGATGCAATTAGCCAGTTC 2112
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1932 CCACCAAGTAAAAACGCAGTGGAGCAGCTACTCGTACTACAAGATGCAATTAGCCAGTTC 1991
Query 2113 GAGTCGCTAATCCAAGCTGTTAACGTTGGTCTCCTCAAAATAAGAGCAATTACCCTTGCA 2172
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1992 GAGTCGCTAATCCAAGCTGTTAACGTTGGTCTCCTCAAAATAAGAGCCATTACTCTTGCA 2051
Query 2173 ATTCTTCCTCAGGCGACAGATACAACGGCTATATCGCTTGTGGTTGTGGCAGTTATATTG 2232
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2052 ATTCTTCCTCAGGCTACAGATACAACGGCTATATCGCTTGTGGTTGTGGCGGTTATATTG 2111
Query 2233 GCGGTTGTTCCTGTTAAGTACTTAATAACGGTTGCGTTTGTAGAGTGGTTCACGAGGGAA 2292
| ||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 2112 GTGGTTGTTCCGGTGAAGTACTTAATTACGATTGCGTTTGTAGAGTGGTTCACGAGGGAA 2171
Query 2293 GTTGGGTGGAGGAAAGCGAGTAGTGACCGGCTAGAGAGGCGGATAAGAGAATGGTGGTTT 2352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2172 ACTGGGTGGAGGAAAGCGAGTAGTGACCGGCTAGAGAGGCGGATAAGAGAATGGTGGTTT 2231
Query 2353 AGGGTACCAGCAGCTCCTGTTCAGCTCATTAGAGCCGAAGATAGCAAGAAGAAGAAGAAA 2412
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2232 AGGGTACCCGCAGCTCCTGTTCAGCTCATTAGAGCCGAAGATAGCAAGAAGAAGAAGAAA 2291
Query 2413 TGACACTTTTCAATTCT--CTCACACGCATTGTCTCTCTTTCTAGACATATTGTTTTGAT 2470
|||||||||||| |||| |||||||||| |||||||||||||||||||||| |||| ||
Sbjct 2292 TGACACTTTTCATTTCTGTCTCACACGCACTGTCTCTCTTTCTAGACATATTCTTTTCAT 2351
Query 2471 ATTAGAATTTTTTATTCTTCTTCtttttttttCCCCTTTTTAAGTAAGATTCGGGTTTAT 2530
|||||| |||||| || ||||| ||||| || |||| |||||||||||||||||||
Sbjct 2352 ATTAGA-TTTTTT-TTGTTCTT-TTTTT----CCA-TTTT-AAGTAAGATTCGGGTTTAT 2402
Query 2531 TCATAAATATGAGACGAACTAACTCGTTTTTTGACTTTTAACTACCCAGTTTGACAAAAA 2590
||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| |
Sbjct 2403 TCATAAATATGAGACGAACAAACTCGTTTCTTGACTTTTAACTAGCCAGTTTGACAAATA 2462
Query 2591 CAAGT 2595
|||||
Sbjct 2463 CAAGT 2467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844185775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5