BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23390.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value Ahg489200 jgi|Araly1|489200|fgenesh2_kg.6__2334__AT5G23390.1 3927 0.0 > Ahg489200 jgi|Araly1|489200|fgenesh2_kg.6__2334__AT5G23390.1 Length=2467 Score = 3927 bits (2126), Expect = 0.0 Identities = 2355/2465 (96%), Gaps = 18/2465 (1%) Strand=Plus/Plus Query 134 CGGGAAAGA-AAGGAATCTGAATCGGAGAAGCAATCGAGGTTTACGATTACCAAATTCTG 192 ||||||||| || ||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 18 CGGGAAAGAGAA-GAATCTGAATCGGAGAAGCAATCTAGGTTTACGATTACC-AATTCTG 75 Query 193 ATCTAATCTGATTAATTGTGGTGATTTCCGATGGAAGAAGACGGTGGTGGCGGCGGTGCG 252 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 76 -TCTGATCTGATTAATTGTGGTGATTTCCGATGGAAGAAGAC---GGTGGCGGCGGTGCG 131 Query 253 AAAGTTGGAATGCTGGAGAATTTCATGAAGACGCATCAGAGTTCTTTGAAATCGTTATTC 312 ||||| ||| |||||||||||||||||| |||||| ||||||||||||||||| || ||| Sbjct 132 AAAGTCGGAGTGCTGGAGAATTTCATGAGGACGCAGCAGAGTTCTTTGAAATCCTTGTTC 191 Query 313 CAGAGAAAGAAATCATCCTCTGGTCGTGATGGAGATGCTTCTCCGTCGCCTATCGCTTCC 372 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 CAGAGGAAGAAATCGTCCTCTGGTCGTGATGGAGATGCTTCTCCGTCGCCTATCGCTTCC 251 Query 373 CCGAAACCTATTCCGCAGCTCTCTCTTCTCGCCAATTCCGTCGTCTCCCGCTGTTCAAAG 432 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 252 CCGAAACCTATTCCTCAGCTCTCTCTTCTCGCCAATTCCGTCGTCTCACGCTGTTCAAAG 311 Query 433 ATCCTGAACATTCAAACAGAAGATCTGCAGCATCATTTTGATGTAGAGTTGCCTGAGAGT 492 ||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 312 ATCCTTAACATTCCAACAGAAGATCTGCAACATCATTTTGATGTAGAGTTGCCTGAGAGT 371 Query 493 GTTAAGCAACTATTGACATATGCAAGGAACTTTTTAGAGTTCTGCTCTTTTCAGGCACTT 552 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 372 GTTAAGCAACTCTTGACATATGCAAGGAACTTTTTAGAGTTCTGCTCTTTTCAGGCACTT 431 Query 553 CATCAAGTGATGAAAAAACCTGATTACTTGAGTGATCAAGAGTTCCGTCAGCTAATGTTT 612 || |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 432 CACCAAGTGATGAAAAAACCTGATTACTTAAGTGATCAAGAGTTCCGTCAGCTATTGTTT 491 Query 613 GACATGATGCTTGCTTGGGAGACTCCCAGTGTCACAAGTGAGCAGGAAAACAAAGATGCA 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 492 GACATGATGCTTGCTTGGGAGACTCCCAGTGTCACAAGTGAGCAGGAAAACAAAGATGCA 551 Query 673 GCATCTCCCTCCAAGCAGGACTCAGAGGATGAGGATGGATGGTCGCTATTCTATTCAAGT 732 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 552 GCATCTCCCTCCAAGCAGGACTCAGAGGATGAGGATGGGTGGTCGCTATTCTATTCAAGT 611 Query 733 CCCACTAATATGGCAATGCAGGTTGATGaaaaaaaGTCTGTCGGACAGGAGGCTTTTGCA 792 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 612 CCCACAAATATGGCAATGCAGGTTGATGAAAAAAAGTCTGTAGGACAGGAGGCTTTTGCA 671 Query 793 AGAATTGCTCCGGTTTGTCCTGCCATTGCAGATGCAATAACTGTACATAATCTTTTTGAT 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 AGAATTGCTCCGGTTTGTCCTGCCATTGCAGATGCAATAACTGTACATAATCTTTTTGAT 731 Query 853 GCACTAACTAGCTCGTCAGGCCACAGGCTTCATTATATCGTATATGACAAATACCTCCGC 912 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 732 GCACTGACTAGCTCGTCAGGCCACAGGCTTCATTTTATCGTATATGACAAATACATCCGC 791 Query 913 ACACTTGACAAAATTTTCAAGGCTGCAAAAAGCACTCTAGGACCTTCAGCTGCCAATCTT 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 ACACTTGACAAAATTTTCAAGGCTGCAAAAAGCACTCTAGGACCTTCAGCTGCCAATCTT 851 Query 973 CAGCTTGCCAAGGGAGAAATAGTGCTTGATATGGATGGTGCAAATCCTGTTTTACCGGTT 1032 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 852 CAGCTTGCCAAGGGAGAAATAGTGCTTGATATGGATGGTGCAAACCCTGTTTTACCGGTT 911 Query 1033 CTTAAACACGTGGGCATCTCAGCATGGCCTGGTAAACTGACACTTACCAACTGTGCTCTA 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 912 CTTAAACACGTGGGCATCTCAGCATGGCCTGGTAAACTGACACTTACCAACTATGCTCTA 971 Query 1093 TATTTTGATTCAATGGGTGGTGGTGAAAAGCCCATGCGATATGATCTCACTGAAGACACA 1152 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 972 TATTTTGATTCAATGGGTGGTGGTGAAAAGGCCATGCGATATGATCTCACTGAAGACACA 1031 Query 1153 AAACAGGTCATCAAACCTGAGTTGACAGGGCCATTGGGTGCTCGTATATTTGATAAAGCC 1212 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1032 AAACAGGTCATCAAACCTGAGTTAACAGGGCCATTGGGTGCTCGTATATTTGATAAAGCC 1091 Query 1213 ATTATGTATAAATCAATTACAGTACCAGAGCCAGTATTTTTTGAATTTACAGAGTTTAAA 1272 || |||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| Sbjct 1092 ATCATGTATAAATCAATTATAGTACCAGAGCCAGTATATTTTGAATTCACAGAGTTTAAA 1151 Query 1273 GGCAATGCTCGTCGAGACTACTGGTTGGGAATTTGCCTGGAGATCCTTCGTGTACAATGG 1332 |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| Sbjct 1152 GGCAATGCTCGTCGAGACTACTGGTTGGGAATATGTTTGGAGATCCTTCGCGTACAATGG 1211 Query 1333 TTCATACGAAGATACAACTTTAAAGGGATTCAACGATCAGAAATACTTGCAAGAGCAATC 1392 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1212 TTCATACGAAGATACAACTTTAAAGGGGTTCAACGATCAGAAATACTTGCAAGAGCAATC 1271 Query 1393 CTTGGGATATTCCGGTACCGTGCAATAAGGGAAGCTTTTCAAGTCTTCTCTTCCCAATAC 1452 ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1272 CTTGGCATATTCCGGTATCGTGCAATAAGGGAAGCTTTCCAAGTCTTCTCTTCCCAATAT 1331 Query 1453 AAAACATTGCTTATATTTAACCTGGCAGAAAGTCTCCCCGGCGGAGATATGGTCTTAGAA 1512 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1332 AAAACATTGCTTATATTTAACCTGGCAGAAAGTCTCCCCGGTGGAGATATGGTCTTAGAA 1391 Query 1513 GCTCTGTCCAGCCGTGTCTCTCGCATAACCACTAATGTTGCTTCTGATATCGGTTCTGTT 1572 ||||| ||||| ||||||||||| ||||||||| |||| |||||||| ||||||||||| Sbjct 1392 GCTCTATCCAGTCGTGTCTCTCGTATAACCACTGATGTCCCTTCTGATGTCGGTTCTGTT 1451 Query 1573 CAGTATATGAAATGGCCCTCAAACTTATCTCCAGTCTCACTCAAATTGCTTGAGCATTTT 1632 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1452 CAGTATATGAAATGGCCCTCAAAATTATCTCCAGTATCACTCAAATTGCTTGAGCATTTT 1511 Query 1633 GGCTTGAATCTAGAAACAGGGACAAATATGGGTGAAGAATTGACAATCGTAGGAGATTTT 1692 ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct 1512 GGCTTGAATCTAGAAACTGGGACAAATATGGGTGAAGAAATGACAATCGTAGGAGATTTT 1571 Query 1693 TGTGTTGGGGAGACGAGTCCATTGGAGATAGCTCTGAAACAGTCAATCCTAGACACAGAC 1752 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1572 TGTGTTGGAGAGACGAGTCCATTGGAGATAGCTCTGAAACAGTCAATCCTAGACACAGAT 1631 Query 1753 AGAGCTGAAGCTGCTCAGGCGACTGTGGAACAAGTGAAAGTAGAAGGAATTGACACTAAC 1812 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1632 AGAGCTGAAGCTGCTCAGGCGACTGTGGAACAAGTGAAAGTAGAAGGAATTGACACTAAC 1691 Query 1813 GTTGCAGTTATGAAGGAGCTATTGTTACCTTTCATCAAACTAGGCTTGCATATAAATCGC 1872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1692 GTTGCAGTTATGAAGGAGCTATTGTTACCTTTCATCAAACTAGGCTTGCATATAAATCTC 1751 Query 1873 TTAGCCTATTGGCAAGATCCTTATAAATCAACGGTGTTCATGATCTTGGTCAGCTATATG 1932 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1752 TTAGCCTATTGGCAAGATCCTTATAAATCAACGGTGTTCATGATCTTGGTCAGCTATTTG 1811 Query 1933 ATTATCAGTGGGTGGATCGGTTTCATATTACCGTCAATATTACTCCTAGTAGCTATAGTA 1992 |||||||||| |||||||||||||||| ||||||| |||||| ||||||| ||||||||| Sbjct 1812 ATTATCAGTGAGTGGATCGGTTTCATACTACCGTCCATATTAGTCCTAGTGGCTATAGTA 1871 Query 1993 ATGATGTGGCGTAAGCAATTCAACAAAGGGAAAGAACCAAAAACCGTTCGTGTGAAAGCT 2052 ||| ||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||| Sbjct 1872 ATGCTGTGGCGAAAGCAATTCAACAAAGGGAAAGAACCAAAAGCTGTTCGAGTGAAAGCT 1931 Query 2053 CCACCAAGTAAAAACGCGGTGGAGCAGCTTCTCGTACTACAAGATGCAATTAGCCAGTTC 2112 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1932 CCACCAAGTAAAAACGCAGTGGAGCAGCTACTCGTACTACAAGATGCAATTAGCCAGTTC 1991 Query 2113 GAGTCGCTAATCCAAGCTGTTAACGTTGGTCTCCTCAAAATAAGAGCAATTACCCTTGCA 2172 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1992 GAGTCGCTAATCCAAGCTGTTAACGTTGGTCTCCTCAAAATAAGAGCCATTACTCTTGCA 2051 Query 2173 ATTCTTCCTCAGGCGACAGATACAACGGCTATATCGCTTGTGGTTGTGGCAGTTATATTG 2232 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2052 ATTCTTCCTCAGGCTACAGATACAACGGCTATATCGCTTGTGGTTGTGGCGGTTATATTG 2111 Query 2233 GCGGTTGTTCCTGTTAAGTACTTAATAACGGTTGCGTTTGTAGAGTGGTTCACGAGGGAA 2292 | ||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 2112 GTGGTTGTTCCGGTGAAGTACTTAATTACGATTGCGTTTGTAGAGTGGTTCACGAGGGAA 2171 Query 2293 GTTGGGTGGAGGAAAGCGAGTAGTGACCGGCTAGAGAGGCGGATAAGAGAATGGTGGTTT 2352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2172 ACTGGGTGGAGGAAAGCGAGTAGTGACCGGCTAGAGAGGCGGATAAGAGAATGGTGGTTT 2231 Query 2353 AGGGTACCAGCAGCTCCTGTTCAGCTCATTAGAGCCGAAGATAGCAAGAAGAAGAAGAAA 2412 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2232 AGGGTACCCGCAGCTCCTGTTCAGCTCATTAGAGCCGAAGATAGCAAGAAGAAGAAGAAA 2291 Query 2413 TGACACTTTTCAATTCT--CTCACACGCATTGTCTCTCTTTCTAGACATATTGTTTTGAT 2470 |||||||||||| |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 2292 TGACACTTTTCATTTCTGTCTCACACGCACTGTCTCTCTTTCTAGACATATTCTTTTCAT 2351 Query 2471 ATTAGAATTTTTTATTCTTCTTCtttttttttCCCCTTTTTAAGTAAGATTCGGGTTTAT 2530 |||||| |||||| || ||||| ||||| || |||| ||||||||||||||||||| Sbjct 2352 ATTAGA-TTTTTT-TTGTTCTT-TTTTT----CCA-TTTT-AAGTAAGATTCGGGTTTAT 2402 Query 2531 TCATAAATATGAGACGAACTAACTCGTTTTTTGACTTTTAACTACCCAGTTTGACAAAAA 2590 ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| | Sbjct 2403 TCATAAATATGAGACGAACAAACTCGTTTCTTGACTTTTAACTAGCCAGTTTGACAAATA 2462 Query 2591 CAAGT 2595 ||||| Sbjct 2463 CAAGT 2467 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98844185775 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5