BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23395.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489201 jgi|Araly1|489201|fgenesh2_kg.6__2335__AT5G23395.1 809 0.0
> Ahg489201 jgi|Araly1|489201|fgenesh2_kg.6__2335__AT5G23395.1
Length=845
Score = 809 bits (438), Expect = 0.0
Identities = 742/876 (85%), Gaps = 71/876 (8%)
Strand=Plus/Plus
Query 125 AGAGACTAGAATATGGAAAAATTCAAATTCAAGCCCAATAAACCCTGAACAAAATTTAAA 184
||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 1 AGAGACTAGAATATGAAAAAATTCAAATTCAAGCCCAATAAACACTAAACAAAATTGAAA 60
Query 185 GCCTGGCCC-TTGTCTGAC-CATCTGGGCCTTCTTTT--G-ATTTCAATTTTGGGAAATT 239
||| ||||| || | |||| ||||||||||| |||| | | ||| | || || ||
Sbjct 61 GCCCGGCCCGTT-T-TGACTTATCTGGGCCTT-TTTTGGGAAATTC-AGATT-GG-AA-- 112
Query 240 CAGATTGCGTCGACGCATTTCTTTTGAGGGATGGATCTGCTTTCTCGTCGGCGGCTAATC 299
| | | |||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 113 CCG-TAACGTCGACGCATTTCTTTTGA--G--GGATCTGCTTTCTCGTCGGCGGCTAACC 167
Query 300 AAATTCTTCCAGAGGGTTTTGAAAGAAATTTCTCGAGAT-GG----G-TC------A--A 345
||||||||| ||| ||||||| | | |||||||| || || | || | |
Sbjct 168 AAATTCTTCGAGA-GGTTTTGCCA-CATTTTCTCGACATGGGTCAAGCTCAGAGTGACGA 225
Query 346 G--CTC-A----AA-G-TGACGA-GA--AC-TCAATTCCGACGACGACGACAACGAACA- 391
| ||| | || | ||||| || || | | ||||||||||||| |||||||
Sbjct 226 GAACTCAATTCCAACGACGACGACGACGACGACGACGACGACGACGACGACGACGAACAC 285
Query 392 --CTCCTCCTCCTTCTGCGAATTCACCTCGGGATTCTGAAGATACTTCGTCGCCATCGAT 449
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 286 TCCTCCTCCTCCTTCTGCGAATTCGCCGCGGGATTCTGAAGATACTTCGTCGCCATCGAT 345
Query 450 GGATTCTCTTCTTGCAGAAGCTGCAGCATATGGTGAAGATGATAATGAGAATGAGTCTCT 509
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 346 GGATTCTCTCCTCGCAGAAGCTGCAGCATATGGTGAGGATGATAATGAGAATGAGTCGCT 405
Query 510 TGAAGCCAAAG-CACAGAGAGCTCTCGATTGTCCTTGTATAGCAGATTTGCGTAATGGCT 568
|||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 406 TGAAGC-AAAGGCACAGAGAGCTCTCGATTGTCCTTGCATAGCAGATTTGCGTAATGGAT 464
Query 569 CTTGCGGGTCTCAGTTCTCCGAGGCATTCCTTTGCTTTCTCAAAAGCACTGCTGAAGAAA 628
||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 465 CTTGCGGCTCTCAGTTCTCCGAGGCCTTCCTTTGCTTTCTCAAGAGTACTGCTGAAGAAA 524
Query 629 AGGGATCAGACTGCGTGAATCCATTTGTAGCATTGCAAAGCTGTATCAATGCCAATCCGG 688
||||||||||||| ||| ||||||||||||| ||||||||||||||||| || |||||||
Sbjct 525 AGGGATCAGACTGTGTGCATCCATTTGTAGCGTTGCAAAGCTGTATCAAAGCAAATCCGG 584
Query 689 ATGCATTCTCTAAATCAGTTACAGGGGACGAAAAAGAAA-CCGAGAAAAAGGAAGA-GCA 746
|||||||||||||||||||||||| ||| ||| | |||| |||||||||||||||| | |
Sbjct 585 ATGCATTCTCTAAATCAGTTACAGAGGATGAAGA-GAAAACCGAGAAAAAGGAAGAAG-A 642
Query 747 GCCTCCTGTGCAAGACCATAGAATCATCCCTCCTCTCTGGGCCAAAGACCCGCCTCGCAG 806
||| || ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 643 GCCGCCGGTGCAAGACCATAGAATCATCCCGCCTCTCTGGGCCAAAGACCCGCCTGGCAG 702
Query 807 TGGCAATTCCAAGCTTTAGAATATCAACAACAATGGAGTCAGCATCAGAAGCTAGTCTCT 866
| |||||||||||||||||| |||||||||||||||||||| || | |||
Sbjct 703 TAACAATTCCAAGCTTTAGAAGATCAACAACAATGGAGTCAG--TC------T---CTC- 750
Query 867 CCTCTTTTGATTCTTTTCTCTAGACAGCACTTTTAA--GAATGTAAAAGAAGAGTAGAAG 924
| ||||||||||||| ||||||| || || || ||| ||||||||||||||||||
Sbjct 751 C-TCTTTTGATTCTTCTCTCTAGGCAACAAAAACAAAAGAAAGTAAAAGAAGAGTAGAAG 809
Query 925 ACCATGATCAGTGGTCGTGTAGATCAACATTGTTCT 960
||||| ||||||||||||||||||||||||||||||
Sbjct 810 ACCATAATCAGTGGTCGTGTAGATCAACATTGTTCT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5