BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23400.1
Length=2300
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941866 jgi|Araly1|941866|scaffold_602410.1 2787 0.0
> Ahg941866 jgi|Araly1|941866|scaffold_602410.1
Length=1807
Score = 2787 bits (1509), Expect = 0.0
Identities = 1708/1805 (95%), Gaps = 10/1805 (1%)
Strand=Plus/Plus
Query 258 CAA-ATCCCAAAATGCAAAACCTGAAATGGGTTTTGATGAATCTCTTGTTTGTTTCTGCT 316
||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 9 CAATATCCCAAAATGCAAAACCTGAAATGGG-TTT--TGAATCTCTTGTTTGTTTCTTCT 65
Query 317 CTTGTTCGTAATTTTGTTCTTTCATCATCACAACAAGTAATCTGTTCAAGCCAAGACAGA 376
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 66 CTTGTTCATAATTTTGTTCACTCATCATCACAACAAGTAATCTGTTCAAGCCAAGACAGA 125
Query 377 GCAACACTTCTGGGTTTCAAGTCAAGCATCATCGAGGACACAACAGGAGTTCTTGATTCA 436
| |||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||
Sbjct 126 GAAACACTTCTGGGTTTCAAGTCAAGTATCATCCAGGACACAACTGGAGTTCTAGATTCA 185
Query 437 TGGGTTGGTAAAGATTGTTGCAATGGAGATTGGGAAGGTGTTCAATGCAATCCAGCCACC 496
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 186 TGGGTTGGTAAAGATTGTTGCAATGGAGATTGGGAAGGTGTTCAATGCAATCCGGCCACC 245
Query 497 GGAAAAGTCACCGGCTTGGTGTTACAATCCGCC-GTGAACGAGCCTACTCTCTACATGAA 555
||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||
Sbjct 246 GGAAAAGTCACCGGCTTGGTGCTACAATCC-CCAGTGAACGAGCCTACTCTTTACATGAA 304
Query 556 AGGCACATTATCACCTTCTTTGGGTAATCTCCGATCTCTTGAGCTTTTGCTGATTACTGG 615
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 305 AGGTACATTATCGCCTTCACTGGGTAATCTCCGATCTCTTGAGCTTTTGTTGATCACTGG 364
Query 616 AAACAAATTCATCACTGGTTCAATCCCCAACAGCTTCTCTAATCTGACCAGTCTTCGTCA 675
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 365 AAACAAATTCATCGCTGGTTCGATCCCCAACAGCTTCTCTAATCTGACCAGTCTTCGTCA 424
Query 676 GCTCATACTCGATGATAATTCTCTCCAAGGCAATGTT-CTTTCTTCTTTAGGCCATCTTC 734
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 425 GCTCATACTCGATGATAATTCTCTCCAAGGCAATGTTCCTTT-TGCTTTAGGCCATCTTC 483
Query 735 CATTGTTGGAGATTCTCTCTTTAGCTGGGAATCGCTTCTCAGGTCTTGTCCCGGCGAGTT 794
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 CATTGTTGGAGACTCTCTCTTTAGCTGGGAATCGCTTCTCAGGTCTTGTCCCGGCGAGTT 543
Query 795 TTGGAAGCTTGAGACGTCTTACTACGATGAATTTGGCTCGAAACTCTTTCTCTGGTCCAA 854
|||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||
Sbjct 544 TTGGAAGCTTGAGAAGCCTTACTACGATGAATTTGGCTCGAAATTCCTTCTCTGGTCCAA 603
Query 855 TCCCAGTGACTTTCAAGAACCTCCTCAAACTTGAGAATCTTGATCTCAGCTCCAATTTGT 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TCCCAGTGACTTTCAAGAACCTCCTCAAACTTGAGAATCTTGATCTCAGCTCCAATTTGT 663
Query 915 TATCTGGACCAATCCCAGATTTCATAGGCCAGTTTCAGAATTTAACCAATCTTTATCTCT 974
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TATCTGGACCATTCCCAGATTTCATAGGCCAGTTTCAGAATTTAACCAATCTTTATCTCT 723
Query 975 CCAGCAACAGATTCTCCGGGGTGTTACCAGTTTCTGTTTACAGCTTAAGGAAGCTTCAAA 1034
||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct 724 CCAGCAACAGATTATCCGGGGGGTTACCAGTTTCTGTTTACGGCTTAAGGAAGCTTCAGA 783
Query 1035 CCATGTCGTTGGAGCGTAATGGTCTAACCGGACCACTCTCAGATCGATTCAGCTATTTGA 1094
||||||||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||
Sbjct 784 CCATGTCGTTGGAGCGTAATGGTCTGACCGGACCACTCTCGGATCGAATCAGCAATTTGA 843
Query 1095 AGTCACTCACTAGCCTTCAGCTAAGCGGCAACAAGTTCATCGGTCACATTCCAGCATCCA 1154
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 844 AGTCACTCACTAGCCTTCAGTTAAGCGGCAACAAGTTCATCGGTCACATACCAGCATCCA 903
Query 1155 TTACAGGACTGCAGAATCTTTGGTCTCTCAACCTCTCAAGAAACCTGTTCTCTGATCCTC 1214
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 904 TTACACAACTGCAGAATCTTTGGTCTCTCAACCTCTCGAGAAACCAGTTCTCTGATCCTC 963
Query 1215 TGCCTGTTGTTGGAGCCAGAGGGTTCCCTTCTCTACTGTCCATTGATCTTTCCTACAACA 1274
|||| | |||| || |||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 964 TGCCCGCGGTTGTAGGCAGAGGATTCCCTTCTCTACTATCCATCGATCTTTCCTACAACA 1023
Query 1275 ACCTTAATCTTGGAGCAATTCCAAGCTGGATCAGAGACAAGCAACTCTCAGATATCAACT 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 ACCTTAATCTTGGAGCAATTCCAAGCTGGATCAGAGACAAGCAACTCTCAGATATCAACT 1083
Query 1335 TAGCTGGTTGCAAACTGAGAGGAACCTTTCCAAAGCTAACAAGACCAACCACCTTGACGT 1394
| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
Sbjct 1084 TGGCTGGTTGCAAACTGAGAGGAACCTTTCCAAAGTTAACAAGACCAACCGCCTTGACCT 1143
Query 1395 CGCTAGATTTGTCTGACAACTTTCTCACAGGTGATGTTTCAGCTTTCCTTACAAGTTTGA 1454
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1144 CGCTAGATTTGTTTGACAACTTTCTCACAGGTGATGTTTCAGCTTTCCTCACAAGCATGA 1203
Query 1455 CCAATGTTCAGAAAGTGAAGCTCTCAAAGAACCAGCTCAGGTTCGATCTCTCCAAGCTGA 1514
||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1204 CCAATCTTCAGAAAGTGAGGCTCTCGAAGAACCAGCTCAGGTTCGATCTCTCCAAGCTGA 1263
Query 1515 AGTTGCCAGAAGGAGTCGCGTCTATTGATCTGAGTTCAAATCTAGTGACCGGGTCCCTTT 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1264 AGTTGCCAGAAGGAGTCGCGTCTATTGATCTGAGTTCAAATCTAGTGACCGGGTCGCTTT 1323
Query 1575 CAAGCCTGATAAACAACAAGACAAGCAGTTTCTTGGAAGAGATCCATCTCACCAACAACC 1634
|||||||| |||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 1324 CAAGCCTGTTAAACAACAAGACAAGTAGCTTCTTGGAAGAGGTCCATCTCACCAACAACC 1383
Query 1635 AAATCTCAGGGAGGATTCCAGATTTCGGAGAAAGCTTGAACCTGAAAGTTCTCAACATAG 1694
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 AAATCTCTGGGAGGATTCCTGATTTCGGAGAAAGCTTGAACCTGAAAGTTCTCAACATAG 1443
Query 1695 GAAGCAACAAAATCAGTGGACAAATCCCAAGTTCAATATCAAACCTTGTTGAACTTGTGA 1754
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1444 GGAGCAACAAAATCAGTGGACAAATCCCAAGTTCAATATCAAACCTTGTTGAACTTTTGA 1503
Query 1755 GACTAGACATCTCAAGGAATCACATAACAGGAGGCATACCTCAAGCTATAGGACAGCTAG 1814
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 1504 GACTAGACATCTCAAGGAATCACATTACAGGAGGCATACCTGAAGCTATAGGACAGCTTG 1563
Query 1815 CACAGCTCAAATGGCTTGATCTCTCGATCAATGCACTTACAGGAAGGATCCCGGATAGCT 1874
| |||||||||||||| || |||||||||||| |||| |||||||| || ||||||||||
Sbjct 1564 CGCAGCTCAAATGGCTCGACCTCTCGATCAATTCACTCACAGGAAGAATTCCGGATAGCT 1623
Query 1875 TATTGAACATCAAGACGATCAAACATGCGAGTTTCAGAGCCAACAGATTGTGTGGACAGA 1934
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||
Sbjct 1624 TATTGAACATCAAGACGATAAAACATGCAAGTTTCAGAGCCAACAGGTTGTGTGGACTGA 1683
Query 1935 TTCCACAAGGAAGACCATTCAACATCTTTCCTGCAGCTGCTTATCTGCATAACCTTTGCT 1994
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1684 TTCCACAAGGAAGACCATTCAACATCTTTCCTGTAGCTGCTTATCTGCATAACCTTTGCT 1743
Query 1995 TGTGTGGTAAGCCATTACCAGCTTGTAGGAAGACAATGAAGTGAAAACCAAA-CACAAGT 2053
||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||
Sbjct 1744 TGTGTGGTAAGCCATTACCAGCTTGCAGGAAGACAATGAAGTGAAG-CCAAAACACACGT 1802
Query 2054 TCTCA 2058
|||||
Sbjct 1803 TCTCA 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86617217130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5