BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G23405.1

Length=809
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941868 jgi|Araly1|941868|scaffold_602412.1                        278    6e-74


> Ahg941868 jgi|Araly1|941868|scaffold_602412.1
Length=558

 Score =  278 bits (150),  Expect = 6e-74
 Identities = 312/386 (81%), Gaps = 27/386 (7%)
 Strand=Plus/Plus

Query  89   GAGACCGAGAAGAGAGTAAGATATGTCCGGCGCATCGTCTGAGGATAGCAGTATTTTCGC  148
            ||||||||| ||| ||||||| ||| | | |||||||||| | | || |||| ||||| |
Sbjct  1    GAGACCGAG-AGAAAGTAAGACATGGCAGACGCATCGTCTAAAGTTATCAGTTTTTTCAC  59

Query  149  TCGCTGTGAAGACGTAGACTGTAACAAGAAAATACCTGTAGAGCTTGTAAGGATGCACAT  208
            |||||||   ||   |||||||||||||||||| |||| ||| ||| |||||||||||||
Sbjct  60   TCGCTGT---GA---AGACTGTAACAAGAAAATTCCTGAAGATCTTCTAAGGATGCACAT  113

Query  209  TTGTTATGCT--AT----GTTCCATAG-GACTCTGGCAGCTCGAGGTTTTGG-GACACAA  260
            ||||||||||  ||    ||| |  || || || |||||||| | | | ||| | |||||
Sbjct  114  TTGTTATGCTAGATACGGGTT-CGCAGTGAATCAGGCAGCTC-AAGCTGTGGAGGCACAA  171

Query  261  ACTCAGGCTAAGAAGAAAC-CTACAAACAAGAAGAAGTC-AACA--ACATCTCTTACCGA  316
             ||||||||||| ||  || | | |||    ||||| || ||||   || ||||||||| 
Sbjct  172  TCTCAGGCTAAG-AG--ACGC-AGAAAGGCCAAGAACTCAAACAGGCCACCTCTTACCGC  227

Query  317  TTTTGCTGTCTTCATGAATCATTTCCGTAAATCTTTTAGAACAGATTATAATGGTGCATT  376
             || | | |||||||||||  ||||||||||  |||||||||||||||||||||| ||||
Sbjct  228  CTTCGTTATCTTCATGAATGGTTTCCGTAAAAGTTTTAGAACAGATTATAATGGTTCATT  287

Query  377  GGTGAAAGAAGG-TTCAAAGATCGGTTGGGAAATGTGGAAGTCTATGACTGAGGATGAGA  435
            |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  288  GGTG-AAGGAGGTTTCAAAGATCGGTTGGGAAATGTGGAAGTCTATGACTGAGGAAGAGA  346

Query  436  AGAAAGATTATCTCGATAAAGCTGCT  461
            |||||| |||| | ||||||||||||
Sbjct  347  AGAAAGTTTATGTGGATAAAGCTGCT  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29888366928


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5