BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23420.1
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941869 jgi|Araly1|941869|scaffold_602413.1 942 0.0
Ahg488801 jgi|Araly1|488801|fgenesh2_kg.6__1935__AT5G23420.1 776 0.0
Ahg941868 jgi|Araly1|941868|scaffold_602412.1 76.8 3e-13
> Ahg941869 jgi|Araly1|941869|scaffold_602413.1
Length=622
Score = 942 bits (510), Expect = 0.0
Identities = 558/581 (96%), Gaps = 3/581 (1%)
Strand=Plus/Plus
Query 52 ACCGAGAAAAAGGAAGAAATGGCTGGACCATCGACAACTTCAAACGCACCAAAGCAGAGG 111
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4 ACCGAG-CAAAGGAAGAAATGGCTGGACCATCGACGACTTCAAACGCACCAAAGCAGAGG 62
Query 112 AAGAGAGTCGAAGCCGAGACTAGCAGCAACACTTCTACTACCTTACGTCGCGCTAAAGAC 171
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 63 AAGAGAGTCGAAGCCGAAACTAGCAGCAATACTTCTACTACCTTACGTCGCGCTAAAGAC 122
Query 172 GGAAGCGCTTTCGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGC 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGAAGCGCTTTCGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGC 182
Query 232 ATGCACAATTGCAGTCTCGATGCTAAGATCAGAGTG-AATCTCGAAGCACAAGTTGTGGA 290
|||||||||||||||||||||||||| ||||||| | ||||||||||| |||||||||||
Sbjct 183 ATGCACAATTGCAGTCTCGATGCTAAAATCAGAG-GCAATCTCGAAGCTCAAGTTGTGGA 241
Query 291 GACACAAGCAGAGGCTAAGAAGAAGCCTGCAGAGAAGAAGAAGACAACATCTGATGGACC 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 242 GACACAAGCAGAGGCTAAGAAGAAACCTGCAGAGAAGAAGAAGACAACATCTGATGGACC 301
Query 351 TAAGCCAAAGAGACTTAAGAAAACCAATGATGAGAAGAAGAGCTCGTCTACTTCAAACAA 410
||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct 302 TAAGCCAAAGAGACTTAAGAAAACCAAGGATGAGAAGAAGACCTCTTCTACTTCAAACAA 361
Query 411 GCCCAAGCGACCTCTTACCGCTTTCTTTATCTTCATGAGTGACTTCCGTAAAACGTTTAA 470
||| || ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 362 GCCTAAACGACCTCTTACCGCTTTCTTTATCTTCATGAATGATTTCCGTAAAACTTTTAA 421
Query 471 GTCAGAGCATAATGGTTCGTTAGCTAAGGATGCTGCAAAGATCGGTGGTGAGAAGTGGAA 530
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 422 AACAGAGCATAATGGTTCATTAGCTAAGGATGCTGCGAAGATCGGTGGTGAGAAGTGGAA 481
Query 531 GTCTTTGACTGAGGAAGAGAAGAAAGTTTATCTGGATAAAGCTGCTGAACTTAAGGCAGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GTCTTTGACTGAGGAAGAGAAGAAAGTTTATCTGGATAAAGCTGCTGAACTTAAGGCAGA 541
Query 591 GTATAACAAGTCACTGGAAAGTAATGATGCTGATGAGGAAG 631
||||||||||||||||||||| |||||||||||||||||||
Sbjct 542 GTATAACAAGTCACTGGAAAGCAATGATGCTGATGAGGAAG 582
> Ahg488801 jgi|Araly1|488801|fgenesh2_kg.6__1935__AT5G23420.1
Length=727
Score = 776 bits (420), Expect = 0.0
Identities = 564/629 (90%), Gaps = 28/629 (4%)
Strand=Plus/Plus
Query 66 AGAAATGGCTGGACCATCGACAACTTCAAACGCACCAAAGCAGAGGAAGAGAGTCGAAGC 125
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAATGGCTGGACCATCGACGACTTCAAACGCACCAAAGCAGAGGAAGAGAGTCGAAGC 60
Query 126 CGAGACTAGCAGCAAC---ACTTCTACTACCTTACGTCGCGCTAAAGACGGAAGCGCTTT 182
|| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AGAAACTAGCAGCAACAATACTTCTACTACCTTACGTCGCGCTAAAGATGGAAGCGCTTT 120
Query 183 CGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGCATGCACAATTG 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGCTCTCTGTGAAGGATGTAACAAGAGTGTAGCTGTAGCGCTTATAAGCATGCACAATTG 180
Query 243 CAGTCTCGATGCTAAGATCAGAGTGAATCTCGAAGCACAAGTTGTGGAGACACAAGCAGA 302
|||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 181 CAGTCTCGATGCTAAGATCAGA--G---CT-------CAAGTTGTGGAGACACAAGCAGA 228
Query 303 GGCTAAGAAGAAGCCTGCAGAGAAGAAGAAGACAACATCTGATGGACCTAAGCCAAAGAG 362
|||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 229 GGCTAAGAAGAAACCTGCAGAGAAGAAGAAGGCAACAGCTGATGGACCTAAGCCAAAGAG 288
Query 363 ACTTAAGAAAACCAATGATGAGAAGAAGAGCTCGTCTACTTCAAACAAGCCCAAGCGACC 422
|||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 289 ACTTAAGAAAACCAATGATGAGAAAAAGAGCTCTTCTACTTCAAACAAGCCTAAACGACC 348
Query 423 TCTTACCGCTTTCTTTATCTTCATGAGTGACTTCCGTAAAACGTTTAAGTCAGAGCATAA 482
||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||
Sbjct 349 ACTTACTGCTTTCTTTATCTTCATGAATGATTTCCGTAAAACTTTTAAAACAGAGCATAA 408
Query 483 TGGTTCGTTAGCTAAGGATGCTGCAAAGATCGGTGGTGAGAAGTGGAAGTCTTTGACTGA 542
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 409 TGGTTCATTTGCTAAGGATGCTGCAAAGATCGGTGGTGAAAAGTGGAAGTCTTTGACTGA 468
Query 543 GGAAGAGAAGAAAGTTTATCTGGATAAAGCTGCTGAACTTAAGGCAGAGTATAACAAGTC 602
||| |||||||||||||| || ||||||||||||||||| |||||||| |||||||||
Sbjct 469 GGATGAGAAGAAAGTTTACCTAGATAAAGCTGCTGAACTAAAGGCAGAATATAACAAG-- 526
Query 603 ACTGGAAAGTAATGATGCTGATGAGGAAGAGGAAGATG-AGGAGAA-GCAATCTGATGAT 660
| | || | ||| ||||||| | || || | || ||||||| | || ||||||||
Sbjct 527 A--G-AA-GCAAT----CTGATGATGTTGATGATGCTGGAGGAGAAAG-AAGCTGATGAT 577
Query 661 GTTGATGATGCTGAGGAGAAACAAGTTGA 689
| |||||| |||||||||||| |||||||
Sbjct 578 GCTGATGAAGCTGAGGAGAAAGAAGTTGA 606
Score = 237 bits (128), Expect = 1e-61
Identities = 150/160 (94%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 643 GAGAAGCAATCTGATGATGTTGATGATGCT-GAGGAGAAACAAGTTGACGATGATGATGA 701
|||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| ||||||
Sbjct 526 GAGAAGCAATCTGATGATGTTGATGATGCTGGAGGAGAAAGAAGCTGATGATGCTGATGA 585
Query 702 AGTTGAGGAGAAAGAAGTTGAGAACACAGATGATGACAAG-AAAGAAGCTGAGGGTAAAG 760
|| ||||||||||||||||||||| |||||||||||| || ||||||||||| |||||||
Sbjct 586 AGCTGAGGAGAAAGAAGTTGAGAAAACAGATGATGAC-AGCAAAGAAGCTGAAGGTAAAG 644
Query 761 AAGAGGAGGAAGAAGAGATTTTGGATGACTACTAGAAATG 800
||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGAGGAGGAAGAAGAGATTTTGGATGACTACTAGAAATG 684
> Ahg941868 jgi|Araly1|941868|scaffold_602412.1
Length=558
Score = 76.8 bits (41), Expect = 3e-13
Identities = 109/138 (79%), Gaps = 19/138 (14%)
Strand=Plus/Plus
Query 686 TTGACGATGA-TGATGAAGTTGAGGAGAAAGAAGTT-G---A-GAACACAGATGATGACA 739
|||| ||| | |||||| | |||||| ||||||||| | | ||| |||||||||||||
Sbjct 433 TTGATGAT-ACTGATGAGGCTGAGGACAAAGAAGTTAGTTAAGGAA-ACAGATGATGACA 490
Query 740 AGAAAGAAGCTGAGGGTAAAGAAGAGGAGGAAGAAGAGATTTTGGATGACTACTAGAAAT 799
| |||| |||||| ||| | | | |||||||||||||||||||||||||||||||
Sbjct 491 ACAAAGTAGCTGAAGGT-----A-A--A-GAAGAAGAGATTTTGGATGACTACTAGAAAT 541
Query 800 GAT-ATGCTCGTTTTTGT 816
| | || || ||| ||||
Sbjct 542 G-TGATTCTTGTTCTTGT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36941106573
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5