BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23430.1
Length=3351
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489203 jgi|Araly1|489203|fgenesh2_kg.6__2337__AT5G23430.1 5112 0.0
Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1 2294 0.0
Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780 172 1e-41
> Ahg489203 jgi|Araly1|489203|fgenesh2_kg.6__2337__AT5G23430.1
Length=3308
Score = 5112 bits (2768), Expect = 0.0
Identities = 3182/3368 (94%), Gaps = 83/3368 (2%)
Strand=Plus/Plus
Query 4 tctctctctctctgcgcctccctttttgc-t-tctctctctc-tcttcttcttcttcctt 60
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||
Sbjct 1 TCTCTCTCTCTCTGCGCCTCCCTTTTTGCTTCTCTCTCTCTCTTCTTCTTCTTCTTCCTT 60
Query 61 gtgctctgctctctgtcaatctctctctgtctccttTTTTACTTCGCCATTGGAGAAAAG 120
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 61 GTGCTCTGCTCTCTGTCAA--TCTCTC--TCTCCTTTTTTACTTCGCCATTGGAGAAAAG 116
Query 121 AGAAATCACTTTCAAC-T-TCTCCTTAGATTTTCCGCTTATCTAAGACAACAACGAAGTT 178
||||||||||||||| | |||||| |||||||| ||| ||||||||||||||||||||
Sbjct 117 TGAAATCACTTTCAACTTCTCTCCTCAGATTTTCTTCTTTTCTAAGACAACAACGAAGTT 176
Query 179 CCGAGTATTCCTCaaaaaaaT--TC--CTCCTTTATCATTTCTTCACTTCCCCAAATT-- 232
|||| | |||| | ||| | || | ||||| ||||||||||||||| |||||||
Sbjct 177 CCGAAT-TTCC-CCAAATCCTCATCAAC-CCTTT-TCATTTCTTCACTTCACCAAATTCG 232
Query 233 TTGTGTG---TTTTCGTGGAGCAGAGTGAGATTGGCGTTT-TGGGAAGACGAAAGTTAAG 288
|| | || ||||||||||| |||||||||||||||||| | |||||| ||||||||||
Sbjct 233 TTTTTTGAATTTTTCGTGGAGTAGAGTGAGATTGGCGTTTCT-GGAAGAAGAAAGTTAAG 291
Query 289 CCC-TTTTTTGCTGGATTGGTTCAGCGGTTGAGAAAGCGGAGATCTTGAGGGCTGCTTGC 347
||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 292 CCCTTTTTTTGCTGGATTGGTTCAGCGGTTGAGAAAGCGGAGATCTTGA-----G---G- 342
Query 348 TTTCTTCGATTTCTCGAGATTTTGGTTTTGGTATGGTTGTTGAGAGTGTAATTTGAATGT 407
||||| | |||| ||||||||||||||| ||||||||||||||||||||
Sbjct 343 -------GATTT-T-----TTTTTGTTTTGGTATGGTTGATGAGAGTGTAATTTGAATGT 389
Query 408 CCTCCACTTCAAGGGTTTCGTTTCCGCCATGACCACCAAGCGAGCCTATAAGCTTCAGGA 467
|| ||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||||||
Sbjct 390 CCACCATTTCAAGGGTTTCGTTACCGTCATGACCACCAAGCGAGCTTATAAGCTTCAGGA 449
Query 468 ATTTGTGGCACATTCTGCTGCTGTCAATTGTCTTAAGATCGGAAGGAAGTCTTCTAGGGT 527
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 450 ATTTGTGGCACATTCTGCTGCTGTCAATTGTCTTAAGATCGGAAGGAAATCTTCTAGGGT 509
Query 528 TCTGGTAACAGGTGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGTAAGCCCAATGC 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 TCTGGTAACAGGTGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGTAAGCCCAATGC 569
Query 588 CATTCTGAGCTTGTATGGGCACTCAAGTGGAATTGATTCAGTGACGTTTGATGCTTCGGA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 570 CATTCTGAGCTTGTATGGGCACTCAAGTGGAATTGATTCAGTGACGTTTGATGCTTCCGA 629
Query 648 GGTCTTAGTTGCAGCAGGAGCTGCTAGTGGTACTATCAAACTTTGGGATTTAGAGGAGGC 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GGTCTTAGTTGCAGCAGGAGCTGCTAGTGGTACTATCAAACTTTGGGATTTAGAGGAGGC 689
Query 708 AAAGATTGTCAGGACTCTCACTGGTCACAGGTCCAATTGCATCTCAGTGGATTTCCACCC 767
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 690 AAAGATTGTCAGGACTCTCACTGGTCACAGGTCCAATTGCATCTCAGTGGATTTTCACCC 749
Query 768 TTTTGGTGAGTTTTTTGCGTCAGGCTCACTAGACACAAATCTTAAGATATGGGATATACG 827
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 750 TTTTGGTGAGTTTTTTGCGTCAGGCTCATTAGACACAAATCTTAAGATATGGGATATAAG 809
Query 828 AAAAAAGGGCTGCATCCATACTTACAAGGGTCACACGCGAGGAGTCAATGTACTCAGATT 887
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 810 AAAAAAGGGCTGCATCCATACTTACAAGGGTCACACTCGAGGAGTCAATGTACTTAGATT 869
Query 888 CACCCCAGATGGTCGCTGGGTTGTATCTGGAGGAGAGGACAACATTGTTAAGGTTTGGGA 947
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 870 CACCCCAGATGGTCGCTGGGTTGTATCTGGAGGTGAGGACAACATTGTGAAGGTATGGGA 929
Query 948 TTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCT 989
Query 1008 AGATTTTCATCCTCATGAATTCCTACTGGCAACAGGTTCAGCTGATAGAACTGTAAAATT 1067
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 990 AGATTTTCATCCTCATGAATTCCTGCTGGCAACAGGTTCAGCTGATAGGACTGTAAAATT 1049
Query 1068 CTGGGATCTGGAAACATTCGAGCTGATTGGTTCTGGTGGACCTGAGACTGCCGGGGTCCG 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 CTGGGATCTGGAAACATTCGAGCTGATTGGTTCTGGTGGACCTGAGACTGCCGGGGTCCG 1109
Query 1128 TTGCCTGAG-TTTCAATCCAGATGGAAAGACTGTGCTTTGTGGATTGCAAGAAAGTCTCA 1186
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TTGCTTGAGCTTT-AATCCAGATGGAAAGACTGTGCTTTGTGGATTGCAAGAAAGTCTCA 1168
Query 1187 AGATTTTCTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGAT 1246
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGATTTTCTCGTGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGAT 1228
Query 1247 TGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTG 1306
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1229 TGTCAGATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAAAGTTGTG 1288
Query 1307 TAGGCGTGTGGGTTGTAGATCTCTCGCGTACTGAGCCATGTATGGCTGGAGACACTGCGC 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1289 TAGGCGTGTGGGTTGTAGATCTCTCGCGTACTGAGCCATGTATGGCTGGAGACACTGCAC 1348
Query 1367 AATCAAATGGTCATCCAGAGAAACGATCTTGCTCAGGAAGAGATCCAGTAGTTCTCAATG 1426
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1349 AATCAAATGGTCATCCAGAGAAAAGATCTTGCTCAGGAAGAGATCCAGTAGTTCTCAATG 1408
Query 1427 ATAATAACTCAAAGACAGTTCTCGGGAAGCTGTCCGTTTCCCAAAATGTAGATCCTTTAT 1486
| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1409 AAAATAACTCAAAGACAGTTCTCGGGAAGCTGCCCGTTTCCCAGAATGTAGATCCTTTAT 1468
Query 1487 TGAAGGAAACAAAGTCTCTAGGAAGATTATCTGTTTCTCAGAACTCTGATCCTTCGACAA 1546
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1469 TGAAGGAAACAAAGTCTCTTGGAAGATTATCTGTTTCTCAGAACTCTGATCCTTCGACAA 1528
Query 1547 AAGAAACAAAGTCCATTGGAAGGTCATCAACATCACAAAATTCAGAGTCCTCGATGAAGG 1606
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1529 AAGAAACAAAGTCCATTGGAAGGTCATCAACATCCCAAAATTCAGATTCCTCGATGAAGG 1588
Query 1607 AATCAAAGCCTCTCGGGAGGTTGTCAGTTTCTCAAAATTCAGACGTTTCTAAAGAGTCAA 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 AATCAAAGCCTCTCGGGAGGTTGTCAGTTTCTCAAAATTCAGACGTTTCTAAAGAGTCAA 1648
Query 1667 GGACGTTT-TCATCCACAGGAAGTTTACCAGGCACTCCTCATAGGGTCAGTTCGACCAAT 1725
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1649 GGAC-TTTGTCATCCACAGGAAGTTTACCAGGCACTCCACATAGGGTCAGTTCGACCAAT 1707
Query 1726 GTATCAAAAGCCACTTCGGGTGTTTCAACAGCCGTCTCTAATGCTGCAACGTCAAGGAGG 1785
|| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1708 GTGTCAAAAGCCACTTCAGGTGTTTCAACAGCCGTCTCTAATGCTGCAACGTCACGGAGG 1767
Query 1786 AATTTTACAAAAGCTAACCCAAAGGCGAATCCTGTCAATAAGGCAGCAGATTTTGCTCCG 1845
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1768 AATTTTATGAAAGCTAACCCAAAGGCGAATCCTGTCAATAAGGCAGCAGATTTTGTTCCG 1827
Query 1846 GTGATTGTCCCCAGAGCAGACCCTAGAATAGAGCAGGCTACTGAATCCAGAGCAGAACTT 1905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 GTGATTGTCCCCAGAGCAGACCCTAGAATAGAGCAGGCTACTGAATCCAGAGCAGAACTT 1887
Query 1906 GACATAATTGCAAGAACCATGCCGTATTCATTGCAGGCGGCTGATTCCCGAAGGTCACCT 1965
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1888 GACATAATTGCAAGAACCATGCCTTATTCGTTGCAGGCGGCTGATTCTCGAAGGTCACCT 1947
Query 1966 AGCAGCAGAAATAACCCTGATCTGCCAGACGCTTC-GGTTCTTGAAATGTCTGAGTCTCA 2024
||||||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||
Sbjct 1948 AGCAGCAGAAATAACCCTGATCTGCCAAATGCTTCTGGTT-TTGAAATGTCTGAGTCTCG 2006
Query 2025 GCCAGTTGAACCAAATAATATACCAGATGGGGGTACACTTCCTGGTGGAAAGGTTGGCAT 2084
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2007 GCCAGTTGAACCAAATAATATACTAGATGGGGGTACACTTCCTGGTGGAAAGGGTGGCAT 2066
Query 2085 GCGGGGTGCAACTGAGCGAAGCATTAATGATTTTAGATACAAGAGATATGGCAGGAGTAA 2144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 GCGGGGTGCAACTGAGCGAAGCATTAATGATTTTAGATACAAGAGATATGGCAGGAGTAA 2126
Query 2145 TTCAAGGTCACGGATGGGGTCACCTCCACGAAACCACGATGAAAACTATGACTTGGTAAG 2204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 TTCAAGGTCACGGATGGGGTCACCTCCACGAAACCACGATGAAAACTATGACTTGGTAAG 2186
Query 2205 CCACAGATCAAATAGAGACCCAAGCCCCACTGAAAGTCAGAAAGGAGGAAGATTCCAGTC 2264
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 CCACAAATCAAATAGAGACCCAAGCCCCACTGAAAGTCAGAAAGGAGGAAGATTCCAGTC 2246
Query 2265 ACTCGTCATAAATAGGGAGAGGAGAGGAAGATTTTCAAACTTCGAGGGTCCTGTTTCAAA 2324
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 2247 GCTCGTCATAAATAGGGAGAGAAGAGGAAGGTTTTCAAATTTCGAGGGTCCTGTTTCAAA 2306
Query 2325 TTTTTCAAGTGGAAATATGCCTGCTCCAAACATCCGCCCTTCAAATATGTTCAAGCAGAG 2384
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2307 TTTTTCAAGTGGAAATGTGCCTGCTCCAAACATCCGCCCTTCAAATATGTTCAAGCAGAG 2366
Query 2385 AGGGAACCATATGCCAGTTGAACAAGGGATCGATTCTCCTTCTGAAGAAAATATTGTTGA 2444
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2367 AGGGAACCATATGCCAGTAGAACAAGAGATCGATTCTCCTTCTGAAGAAAATATTGTTGA 2426
Query 2445 AGACATAATGGGAAAGCACAATCAATTTGTCAGCTCTATGCAGTCTCGTTTGGCTAAGTT 2504
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2427 AGACATAATGGGGAAGCACGATCAATTTTTCAGCTCTATGCAGTCTCGTTTGGCTAAGTT 2486
Query 2505 ACAGGTAGTTCGTAGATATTGGGAAAGGAATGATGTAAAAAATTCGATAGGCTCGATAGA 2564
|||||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 2487 ACAGGTAGTTCGCAGATATTGGGAAAGGAATGATGTAAAAAACTCGATATGTTCGATAGA 2546
Query 2565 GAAGATGGCTGATAATGCTGTTACTGCGGACGTACTGGGTATAATAACCGAGAGAAATGA 2624
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 2547 GAAGATGGCTGATAATGCTGTTACTGCAGATGTATTGGGTATAATAACCGAGAGAAATGA 2606
Query 2625 GATTTTGACACTGGATAATTGTACCTCCCTTCTTCCCCTTCTAACAGCTCTTTTAGGGAG 2684
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2607 GATTTTGACACTGGATAATTGTACCTCCCTTCTTCCCCTTCTAACAGCTCTTCTAGGGAG 2666
Query 2685 CGGCATGGATCAGCATTTGAGCGTTTCCCTGGATTTGCTGCTGAAGCTTGTCAGACTGTA 2744
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2667 CAACATGGATCAGCATTTGAGCGTTTCCCTGGATTTGTTGCTGAAGCTTGTCAGACTGTA 2726
Query 2745 TGGGTCACCAATTTACTCATCACTGTCAGCTCCAGCATCTGTTGGTGTAGATATCGAGGC 2804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2727 TGGGTCACCAATTTACTCATCACTGTCAGCTCCAGCATCTGTTGGTGTAGATATCGAGGC 2786
Query 2805 TGAGCAAAGGATCGAGCGCTACAGCCGTTGCTTTGTAGAGCTAGAGAAAGTCAAAGCATG 2864
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 2787 TGAGCAAAGGATCGAGCGCTACAGCCGTTGCTTTGTAGAGCTAGAGAAAGTCAAAACCTG 2846
Query 2865 CCTTCCCTCTCTAGCAAGAAGAGGAGGTTTGGTGGCCAAGTCTGTGCTCGAACTCAACCT 2924
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2847 CCTTCCCTCCCTAGCAAGAAGAGGAGGTTTGGTGGCCAAGTCTGTGCTCGAACTCAATCT 2906
Query 2925 AGCATTTCAGGAAGTTTCATCATAATAACTAT-GAGTCTTACAACCCTGGACAAAAACGC 2983
|||||||||||||||||||||||||| ||| | ||||||||||| | || ||
Sbjct 2907 AGCATTTCAGGAAGTTTCATCATAATCACTCTTGAGTCTTACAA------A-AA----GC 2955
Query 2984 AGAGCAAAAGCCCGTCTTCCTCGTGGAAGAACCTGCATCATCCCAAGTCCCCAACCATCT 3043
| | ||||| ||||||||||||| ||||||||||||||||| |||| |||
Sbjct 2956 ----CT---G----TCTTCGTCGTGGAAGAACCCGCATCATCCCAAGTCCC-AACCCTCT 3003
Query 3044 GCTTTTTGATGTGGATTTGGTTCCAAAGGGAGTCTAACAAAAA-CTAAAGGCTGATACTT 3102
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 3004 GCTTTTTGATGTGGATTTGGTTCCAAAGGGAGTCTAACAAAAAACTAAAAGCTGATACTT 3063
Query 3103 ACTAAGTTAACCAAAAGAGTTGGAAGGCAAAAATCCTCCCAAGTTAGCTGCTTCTGGTCA 3162
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3064 ACTAAGATGACCAAAAGAGTTGGAAGGCAAAAATCCTCCCAAGTTAGCTGCTTCTGGTCA 3123
Query 3163 CTAATCTTTGTCTGCATTGTTCTAATTTTGGTGTGTAGTagagagggacagagagaaaga 3222
||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |||
Sbjct 3124 CTAATCTTTGTCTGCATTGTTCTAACTTTGGTGTGTAGTAGAGAGTGAAAGAGAGAGAGA 3183
Query 3223 gagagagCCATT-GGGCTGTGTATTGTTCTTATGAGAGTACTGCTTGAGTTTCTACTCGT 3281
|||||||||||| |||||||||||||||||||||| | |||||||||||||||| ||| |
Sbjct 3184 GAGAGAGCCATTCGGGCTGTGTATTGTTCTTATGA-A-TACTGCTTGAGTTTCTGCTCTT 3241
Query 3282 CTGAAAGAGACATGTTCAGTGTTCTCTCGAA-ACATGAATAGAGGTTTTTCGCGGTTTCT 3340
|||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||||
Sbjct 3242 CTGAAAGAGACATGTTCAGTGTTCTCTC-AACACATTAATAGAGTTTTTTCGCGGTTTCT 3300
Query 3341 TGGATTTC 3348
||||||||
Sbjct 3301 TGGATTTC 3308
> Ahg487674 jgi|Araly1|487674|fgenesh2_kg.6__808__AT5G08390.1
Length=3228
Score = 2294 bits (1242), Expect = 0.0
Identities = 2154/2583 (83%), Gaps = 107/2583 (4%)
Strand=Plus/Plus
Query 418 AAGGGTTTCGTTTCCGCCATGACCACCAAGCGAGCCTATAAGCTTCAGGAATTTGTGGCA 477
|||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||
Sbjct 314 AAGGGTTTCGTTTCCGCCATGAACACCAAGCGCGCCTACAAGCTCCAGGAATTTGTGGCA 373
Query 478 CATTCTGCTGCTGTCAATTGTCTTAAGATCGGAAGGAAGTCTTCTAGGGTTCTGGTAACA 537
|||||||||||||| |||||||||||||| || |||||||| || |||||||| || |||
Sbjct 374 CATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTACA 433
Query 538 GGTGGTGAAGATCACAAGGTCAATCTTTGGGCTATTGGTAAGCCCAATGCCATTCTGAGC 597
|| || |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 434 GGCGGGGAAGATCACAAGGTCAATCTATGGGCTATTGGTAAGCCCAACGCCATCCTGAGC 493
Query 598 TTGTATGGGCACTCAAGTGGAATTGATTCAGTGACGTTTGATGCTTCGG-AGGTCTTAGT 656
|||||||||||||| ||||| ||||||||||| |||||||||||||||| | | ||||||
Sbjct 494 TTGTATGGGCACTCTAGTGGGATTGATTCAGTTACGTTTGATGCTTCGGAATG-CTTAGT 552
Query 657 TGCAGCAGGAGCTGCTAGTGGTACTATCAAACTTTGGGATTTAGAGGAGGCAAAGATTGT 716
||||||||||||||||||||||| || |||||||||||| | |||||||||||| ||||
Sbjct 553 AGCAGCAGGAGCTGCTAGTGGTACAATTAAACTTTGGGATCTCGAGGAGGCAAAGGTTGT 612
Query 717 CAGGACTCTCACTGGTCACAGGTCCAATTGCATCTCAGTGGATTTCCACCCTTTTGGTGA 776
||| |||||||||||||||||||| || ||| | || ||| |||| ||||||||||||||
Sbjct 613 CAGAACTCTCACTGGTCACAGGTCGAACTGCGTATCCGTGAATTTTCACCCTTTTGGTGA 672
Query 777 GTTTTTTGCGTCAGGCTCACTAGACACAAATCTTAAGATATGGGATATACGAAAAAAGGG 836
||||||||| || || || |||||||| ||||| ||||||||||||||| |||| |||||
Sbjct 673 GTTTTTTGCTTCTGGTTCTCTAGACACTAATCTCAAGATATGGGATATAAGAAAGAAGGG 732
Query 837 CTGCATCCATACTTACAAGGGTCACACGCGAGGAGTCAATGTACTCAGATTCACCCCAGA 896
|||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||
Sbjct 733 ATGCATCCATACTTACAAGGGTCACACTCGAGGGGTCAATGTACTCAGATTTACTCCAGA 792
Query 897 TGGTCGCTGGGTTGTATCTGGAGGAGAGGACAACATTGTTAAGGTTTGGGATTTAACAGC 956
|||||| ||| |||||||||||||||| || || |||| |||||||||||||| || ||
Sbjct 793 TGGTCGTTGGATTGTATCTGGAGGAGAAGATAATGTTGTCAAGGTTTGGGATTTGACTGC 852
Query 957 TGGAAAACTGCTGAC-CGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTC 1015
||||||||| || | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 853 TGGAAAACTTTTG-CATGAGTTTAAGAGTCATGAAGGGCAAATTCAGAGTCTAGATTTTC 911
Query 1016 ATCCTCATGAATTCCTACTGGCAACAGGTTCAGCTGAT-AGAACTGTAAAATTCTGGGAT 1074
|||| |||||||| || ||||||||||||||||||||| || |||||||||||||||||
Sbjct 912 ATCCCCATGAATTTCTGCTGGCAACAGGTTCAGCTGATAAG-ACTGTAAAATTCTGGGAC 970
Query 1075 CTGGAAACATTCGAGCTGATTGGTTCTGGTGGACCTGAGACTGCCGGGGTCCGTTGCCTG 1134
|| |||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||
Sbjct 971 CTTGAAACATTCGAGCTTATTGGTTCTGGTGGAACTGAGACTACTGGGGTCCGTTGCCTG 1030
Query 1135 A-GTTTCAATCCAGATGGAAAGACTGTGCTTTGTGGATTGCAAGAAAGTCTCAAGATTTT 1193
| ||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1031 ACCTTT-AATCCAGACGGAAAGAGTGTGCTTTGTGGATTGCAAGAAAGTCTCAAAATTTT 1089
Query 1194 CTCATGGGAGCCAATTAGATGTCATGATGGAGTGGATGTTGGATGGTCAAGA-TTGTCAG 1252
||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||| |
Sbjct 1090 CTCATGGGAGCCAATAAGACGTCATGATGGAGTGGATGTTGGATGGTCAA-ACTTGTCGG 1148
Query 1253 ATATGAATGTTCACGAGGGAAAGCTTCTTGGTTGCTCATACAATCAGAGTTGTGTAGGCG 1312
|||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||
Sbjct 1149 ATATGAATGTTCACGAGGGAAAGCTTCTCGGTTGCTCATACAATCAAAATTGTGTTGGCG 1208
Query 1313 TGTGGGTTGTAGATCTCTCGCGTACTGAGCC-ATGTA-TGGCTGGAGACACTGCGCAATC 1370
| ||||||||||| |||||||| ||||||| ||| | ||| || | |||| | | ||
Sbjct 1209 TTTGGGTTGTAGACCTCTCGCGCCCTGAGCCTATG-AGTGGA-GGCGCCACT-C--AGTC 1263
Query 1371 AAATGGTCATCCAGAGAAA-CGATCTTGCTCAGGAAGAGATCCAGT-AGTTCTCAATGAT 1428
|||| ||||||||||||| | ||| ||||||| ||||||| | | || ||| || |||
Sbjct 1264 AAATTCTCATCCAGAGAAAAC-ATCGGGCTCAGGCAGAGATCAA-TCAGGTCTGAACGAT 1321
Query 1429 AATAACTCAAAGAC-AGTTCTCGGGAAGCTGTCCGTTTCCCA-AAATGTAGATCCTTTAT 1486
|| | ||||||| | ||||||| ||| |||| | |||||| ||| || ||||||||||
Sbjct 1322 AACAGCTCAAAGGTTA-TTCTCGGAAAGTTGTCTGGTTCCCAGAAA-GTGGATCCTTTAT 1379
Query 1487 TGAAGGAAACAAAGTCTCTAGGAAGATTATCTGTTTCTCAGAACTCTGATCCTTCGACAA 1546
||||||||||||||||||| |||| |||||| |||||||| ||||| ||||||| | |||
Sbjct 1380 TGAAGGAAACAAAGTCTCTTGGAAAATTATCAGTTTCTCAAAACTCGGATCCTTTGCCAA 1439
Query 1547 AAGAAACAAAGTCCATTGGAAGGTCATCAACATCACAAAATTCAGAGTCCTC-GATGAAG 1605
||||||||||||| | ||||||||||||| |||| |||| |||||| |||| | | |||
Sbjct 1440 AAGAAACAAAGTCTACTGGAAGGTCATCATCATCTCAAAGTTCAGA-TCCTTTGGTAAAG 1498
Query 1606 GAATCAAAGCCTCTCGGGAGGTTGTCAGTTTCTCAAAAT---TCAGACGTTTCTAAA-GA 1661
||| ||||||||||||| |||||||||||| |||| || ||||||| |||| ||
Sbjct 1499 GAACCAAAGCCTCTCGGAAGGTTGTCAGTTACTCATCATAGCTCAGACGCAG-TAAAAGA 1557
Query 1662 GTCAAGGACGTTT-TCATCCACAGGAAGTTTACCAGGCACTCCTCATAGGGTCA-GTTCG 1719
|||||| || | ||||||||||||||| || ||| | ||||||| ||||| | ||| |
Sbjct 1558 GTCAAG-ACCCCTGTCATCCACAGGAAGTGTATCAGACTCTCCTCACAGGGTTACGTT-G 1615
Query 1720 ACCAATGTATCAAAA-GCCACTTCGGGTGTTTCAACAGCCGTCTCTAATGCTGCAACGTC 1778
|||| || ||||| | |||| ||| |||| |||| ||| | | ||||||| | ||
Sbjct 1616 ACCAGTGCCCCAAAAAGTG-CTTCTGGTATTTCGACAGTTGTCCCCACTGCTGCAGCCTC 1674
Query 1779 AAGGAGGAATTTTACAAAAGCTAACCCAAAGGCGAATCCT---GT---CAATAAGGCAGC 1832
|| ||| |||||| ||||||||||||||||||||||||| || |||||| | |
Sbjct 1675 AAAGAGAAATTTTGGAAAAGCTAACCCAAAGGCGAATCCTCCAGTAGTCAATAAAG-A-- 1731
Query 1833 AGATT-TTGCTCCGGTGATTGTCCCCAGAGCAGACCCTAGAATAGAGCAGGC-TACTGAA 1890
||||| || ||| || |||||||||||| | || || | ||| |||||||| | |||||
Sbjct 1732 AGATTATTT-TCCAGTAATTGTCCCCAGAACGGAGCCAATAATTGAGCAGGCAT-CTGAA 1789
Query 1891 TCCAGAGCAGAACTTGACATAATTGCAAGAACCATGCCGTATTCATTGCAG-----G-CG 1944
| |||||||||||||||||| |||| |||||| ||||| ||||| ||||| | ||
Sbjct 1790 TTCAGAGCAGAACTTGACATTATTGGAAGAACTATGCCATATTCGCTGCAGTCAAAGGCG 1849
Query 1945 GCTGATTCCCGAAGG-TCACCTAGCAGCAGAAATAACCCTGATCTGCCAGAC--GCTTCG 2001
|||||||| || ||| | | ||||||| |||| | || ||||| ||| || | ||||
Sbjct 1850 GCTGATTCTCGGAGGCTGTCA-AGCAGCAAAAATGAGCCAGATCTACCA-ACCAG-TTCG 1906
Query 2002 GTTCTTGAAATGTCTGAGTCTCAGCC-AGTTGAACCAAATAA-TATACCAGATGGGGGTA 2059
||||||||| |||| ||||||| || | | ||||||| | | | ||| ||||||| ||
Sbjct 1907 CTTCTTGAAAGGTCTCAGTCTCAACCTA-TAGAACCAA-TCACTTTACAAGATGGGAATA 1964
Query 2060 CACT-TCCTGGTG--GAAAGGTTGGC--ATGCGGGGTGCAACTGAGCGAAGCAT-TAATG 2113
| | |||| ||| ||| ||| ||| ||| || | || ||||| ||| || ||| |
Sbjct 1965 CT-TATCCTAGTGACGAA-GGT-GGCTCATG-GGA-TACAGCTGAGAGAA-CAAATAAAG 2018
Query 2114 ATTTTAGATACAAGAG-ATATGGCAGGAGTAATTCAAGGTCAC-GGATGGGGTCACCTCC 2171
|| ||||||| | | || ||| ||| ||||||||| |||| || || | ||||| ||
Sbjct 2019 ATAGCAGATACAGG-GTATTTGGAAGGTTTAATTCAAGATCACTGG-TGAGATCACCACC 2076
Query 2172 -ACGAAACCACGATGAAAACTATGACTTGGTAAGCCACAGAT-CAAATAGAGACCCAAGC 2229
| |||| ||| | ||||||| ||||||| | || | | || |||||||||| ||||
Sbjct 2077 GA-GAAATCACAACGAAAACTCTGACTTGATTAGGTATA-ATGCAAATAGAGATTCAAGT 2134
Query 2230 CCCACTGAAAGTCAGAAA-GGAGGAAGATTCCAGTCAC-TCGT-CATAAATAGGGAGAGG 2286
|| |||||||||| |||| ||||||||| | || || | |||| | |||||||||| ||
Sbjct 2135 CCTACTGAAAGTC-GAAAAGGAGGAAGACTGCATTC-CGTCGTTC-TAAATAGGGAAAGA 2191
Query 2287 AGAGGAAGATTTTCAAACTTCGAGGGTCCTGTTTCAAATTTTTCAAGTGGAAATATGCCT 2346
|||||||||||||||||||| |||||||||||||| | || ||| ||||||||||| ||
Sbjct 2192 AGAGGAAGATTTTCAAACTTTGAGGGTCCTGTTTCGAGTTCTTCTGGTGGAAATATGACT 2251
Query 2347 GCTCCAAACA-TCCGCCCTTCAAATATGTTCAAGCAGAGAGGGAACCATATGCCAGTTGA 2405
|| ||||||| || ||||||| |||||| ||||||| ||||| || || ||||||||||
Sbjct 2252 GCACCAAACAGTC-GCCCTTCCAATATGGTCAAGCACAGAGGAAATTATGTGCCAGTTGA 2310
Query 2406 ACAAGG-GATCGA-TTCTCCTT-CTGAAGAAAATATTGTTGAAGACATAATGGGA-AAGC 2461
||||| | || | |||| || | |||||| ||||||||| |||||||||||| || |
Sbjct 2311 TCAAGGAG-TC-ACTTCTGCTAGC-GAAGAAGATATTGTTGTAGACATAATGGGGCAA-C 2366
Query 2462 ACAATCAATTTGTCAGCTCTATGCAGTCTCGTTTGGCTAAGTTACAGGTAGTTCGTAGAT 2521
|| |||||||||||||||| ||||||||||||||||||||||||||||| || |||||||
Sbjct 2367 ACGATCAATTTGTCAGCTCCATGCAGTCTCGTTTGGCTAAGTTACAGGTTGTCCGTAGAT 2426
Query 2522 ATTGGGAAAGGAATGATGTAAAAAATTCGATAGGCTCGATAGAGAAGATGGCTGATAATG 2581
|||||||||| |||||| | ||||| |||||| | || ||||||||||||||||||||||
Sbjct 2427 ATTGGGAAAGAAATGATATTAAAAACTCGATAAGTTCAATAGAGAAGATGGCTGATAATG 2486
Query 2582 CTGTTACTGCGGACGTACTGGGTATAATAACCGAGAGAAATGAGATTTTGACACTGGATA 2641
|||| |||||| ||||| |||| ||| ||||||| ||||||||||||||||||||
Sbjct 2487 CTGTCGTTGCGGATGTACTACTTATAGTAAACGAGAGACCTGAGATTTTGACACTGGATA 2546
Query 2642 ATTGTACCTCCCTTCTTCCCCTTCTAACAGCTCTTTTAGGGAGCGGCATGGATCAG-CAT 2700
||||||||| |||||||||||| | ||| | ||| |||||||| ||| ||| || |||
Sbjct 2547 CTTGTACCTCTCTTCTTCCCCTTTTGACAACACTTCTAGGGAGCAACATTGAT-AGTCAT 2605
Query 2701 TTGAGCGTTTCCCTGGATTTGCTGCTGAAGCTTGTCAGACTGTATGGGTCACCAATTTAC 2760
||||| || | |||||| |||||||| ||||| || ||| |||||||||||| |||||||
Sbjct 2606 TTGAGTGTCTGCCTGGAATTGCTGCTTAAGCTGGTAAGAATGTATGGGTCACAAATTTAC 2665
Query 2761 TCATCACTGTCAGCTCCAGCATCTGTTGGTGTAGATATCGAGGCTGAGCAAAGGATCGAG 2820
|| || || || |||||| ||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 2666 TCGTCGCTTTCGGCTCCATCATCTGTTGGTGTGGATATTGAGGCTGAGCAAAGGATGGAG 2725
Query 2821 CGCTACAGCCGTTGCTTTGTAGAGCTAGAGAAAGTCAAAGCATGCCTTCCCTCTCTAGCA 2880
|| ||||| |||||||||| || || |||||| |||| || |||||||||||| |||||
Sbjct 2726 CGGTACAGTTGTTGCTTTGTCGAACTTGAGAAAATCAAGGCTTGCCTTCCCTCTTTAGCA 2785
Query 2881 AGAAGAGGAGGTTTGGTGGCCAAGTCTGTGC-TCGAACTCAACCTAGCATTTCAGGAAGT 2939
||||||||| ||||||||||||| || | | | ||||||||| || ||||||| |||||
Sbjct 2786 AGAAGAGGAAATTTGGTGGCCAAGACTCTCCAT-GAACTCAACTTAACATTTCAAGAAGT 2844
Query 2940 TTC 2942
|||
Sbjct 2845 TTC 2847
> Ahg892784 jgi|Araly1|892784|Al_scaffold_0006_780
Length=2427
Score = 172 bits (93), Expect = 1e-41
Identities = 113/123 (92%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 799 GACACAAATCTTAAGATATGGGATATACGAAAAAAGGGCTGCATCCATACTTACAAGGGT 858
||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 304 GACACAAATCTCAAGATATGGGATATAAGAAAGAAGGGCTGCATCCATACTTACAAGGGT 363
Query 859 CACACGCGAGGAGTCAATGTACTCAGATTCACCCCAGATGGTCGCTGGGTTGTATCTGGA 918
||||| ||||| |||||||||||||||||||| | ||||||||| ||| ||||||||||
Sbjct 364 CACACTCGAGGGGTCAATGTACTCAGATTCACTCAAGATGGTCGTTGGACTGTATCTGGA 423
Query 919 GGA 921
|||
Sbjct 424 GGA 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126503372652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5