BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G23440.1 Length=801 Score E Sequences producing significant alignments: (Bits) Value Ahg489205 jgi|Araly1|489205|fgenesh2_kg.6__2339__AT5G23440.1 784 0.0 > Ahg489205 jgi|Araly1|489205|fgenesh2_kg.6__2339__AT5G23440.1 Length=667 Score = 784 bits (424), Expect = 0.0 Identities = 510/551 (93%), Gaps = 8/551 (1%) Strand=Plus/Plus Query 68 ATGAGTAGCCAAATCGCTTTGTCACCGGCCATCGCCGCCGCCATTCG-CCGTCCGTCCTC 126 |||||||||| ||||||||||||||||||||||||||||| |||| || ||| || || Sbjct 1 ATGAGTAGCCCCGTCGCTTTGTCACCGGCCATCGCCGCCGCCGTTCGACC-TCCATCATC 59 Query 127 TCACGACTGTCTATCCGCTTCCGCCACTACTGCTACCGCCACCCCCATGGCTCTCAAATC 186 |||||||||||| ||||| |||||||| ||||||| ||||| ||||||| |||||||| Sbjct 60 TCACGACTGTCTCTCCGCCTCCGCCACAACTGCTA---CCACCGCCATGGCGCTCAAATC 116 Query 187 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCAAATCAAACACTCAAGCTC 246 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 117 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCGAATCAAACACTCAAGCTC 176 Query 247 AAGAAAAACTTCTCG---AACCACGATTCGATGCGATGTAGCGATAAAATCCGCAGATTC 303 ||||||||||||||| || |||||||||||||||||||||||| |||||||| ||||| Sbjct 177 AAGAAAAACTTCTCGAATAATCACGATTCGATGCGATGTAGCGATTAAATCCGCTGATTC 236 Query 304 GATAAACGCAGACGCCAATCCTTCGTCCTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 363 | ||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct 237 GGTAAACGCAGACGCCAATCCATCATCTTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 296 Query 364 AGCGAAGGCGAAGATAGGATCTAGGGTTAGAGTAACTGCACCGTTGAAGGTTTATCATGT 423 ||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||| Sbjct 297 AGCGAAGGCGAAGATAGGATCTAGGGTTAAAGTAACAGCTCCGTTGAAGGTTTATCATGT 356 Query 424 AAATCGAGTTCCAGAGGTTGATTTAGAAGGTATGGAAGGTAAACTCAAAGATTACGTTGC 483 ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 357 AAATCGAGTAGCGGAGGTTGATTTGGAAGGTATGGAAGGTAAACTCAAAGATTACGTCGC 416 Query 484 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGATTGAGTTCTTCAAAGA 543 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 417 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGGTTGAGTTCTTCAAAGA 476 Query 544 AATTGAAGGTCGTGGTCTTGTTAAATTTGTTTCACATCTTAAGGAAGATGAGTTCGAGTT 603 ||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| ||||| Sbjct 477 AATTGAAGGTCGTGGTCCTGTTAAATTCGTTGCTCATCTTAAGGAAGATGAGTTTGAGTT 536 Query 604 CATTGATCAGT 614 ||||||||||| Sbjct 537 CATTGATCAGT 547 Score = 167 bits (90), Expect = 1e-40 Identities = 113/123 (92%), Gaps = 6/123 (5%) Strand=Plus/Plus Query 665 gtttgttgtgtttACTGGAACCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 724 |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 549 GTTTGTTGTGGTTACTGGAATCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 608 Query 725 TTCAACCTTTAGCAA-TCATATACATAAGGGTTTCTTCACTCTC-TATTTATGTTGATTT 782 | | |||||||||| ||||||||||||||| ||||||||| || |||| |||||||||| Sbjct 609 T--A-CCTTTAGCAAATCATATACATAAGGGCTTCTTCACT-TCCTATTGATGTTGATTT 664 Query 783 GAT 785 ||| Sbjct 665 GAT 667 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29583383592 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5