BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23440.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489205 jgi|Araly1|489205|fgenesh2_kg.6__2339__AT5G23440.1 784 0.0
> Ahg489205 jgi|Araly1|489205|fgenesh2_kg.6__2339__AT5G23440.1
Length=667
Score = 784 bits (424), Expect = 0.0
Identities = 510/551 (93%), Gaps = 8/551 (1%)
Strand=Plus/Plus
Query 68 ATGAGTAGCCAAATCGCTTTGTCACCGGCCATCGCCGCCGCCATTCG-CCGTCCGTCCTC 126
|||||||||| ||||||||||||||||||||||||||||| |||| || ||| || ||
Sbjct 1 ATGAGTAGCCCCGTCGCTTTGTCACCGGCCATCGCCGCCGCCGTTCGACC-TCCATCATC 59
Query 127 TCACGACTGTCTATCCGCTTCCGCCACTACTGCTACCGCCACCCCCATGGCTCTCAAATC 186
|||||||||||| ||||| |||||||| ||||||| ||||| ||||||| ||||||||
Sbjct 60 TCACGACTGTCTCTCCGCCTCCGCCACAACTGCTA---CCACCGCCATGGCGCTCAAATC 116
Query 187 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCAAATCAAACACTCAAGCTC 246
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 117 TTGCATCGTCGCACCTCTCTCGCTATTCACCTCTCAATCTCGAATCAAACACTCAAGCTC 176
Query 247 AAGAAAAACTTCTCG---AACCACGATTCGATGCGATGTAGCGATAAAATCCGCAGATTC 303
||||||||||||||| || |||||||||||||||||||||||| |||||||| |||||
Sbjct 177 AAGAAAAACTTCTCGAATAATCACGATTCGATGCGATGTAGCGATTAAATCCGCTGATTC 236
Query 304 GATAAACGCAGACGCCAATCCTTCGTCCTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 363
| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 237 GGTAAACGCAGACGCCAATCCATCATCTTCACCGTCATCAGAGGAAGAAATCGAAGCGGA 296
Query 364 AGCGAAGGCGAAGATAGGATCTAGGGTTAGAGTAACTGCACCGTTGAAGGTTTATCATGT 423
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 297 AGCGAAGGCGAAGATAGGATCTAGGGTTAAAGTAACAGCTCCGTTGAAGGTTTATCATGT 356
Query 424 AAATCGAGTTCCAGAGGTTGATTTAGAAGGTATGGAAGGTAAACTCAAAGATTACGTTGC 483
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 357 AAATCGAGTAGCGGAGGTTGATTTGGAAGGTATGGAAGGTAAACTCAAAGATTACGTCGC 416
Query 484 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGATTGAGTTCTTCAAAGA 543
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 417 TGTTTGGAAAGGGAAACGAATCTCAGCTAATCTTCCTTATAAGGTTGAGTTCTTCAAAGA 476
Query 544 AATTGAAGGTCGTGGTCTTGTTAAATTTGTTTCACATCTTAAGGAAGATGAGTTCGAGTT 603
||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |||||
Sbjct 477 AATTGAAGGTCGTGGTCCTGTTAAATTCGTTGCTCATCTTAAGGAAGATGAGTTTGAGTT 536
Query 604 CATTGATCAGT 614
|||||||||||
Sbjct 537 CATTGATCAGT 547
Score = 167 bits (90), Expect = 1e-40
Identities = 113/123 (92%), Gaps = 6/123 (5%)
Strand=Plus/Plus
Query 665 gtttgttgtgtttACTGGAACCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 724
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 549 GTTTGTTGTGGTTACTGGAATCTGGGAATGGAGAATGATTTGTATGTAGTGTGATGTGTA 608
Query 725 TTCAACCTTTAGCAA-TCATATACATAAGGGTTTCTTCACTCTC-TATTTATGTTGATTT 782
| | |||||||||| ||||||||||||||| ||||||||| || |||| ||||||||||
Sbjct 609 T--A-CCTTTAGCAAATCATATACATAAGGGCTTCTTCACT-TCCTATTGATGTTGATTT 664
Query 783 GAT 785
|||
Sbjct 665 GAT 667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5