BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G23450.3
Length=3126
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489208 jgi|Araly1|489208|fgenesh2_kg.6__2342__AT5G23450.2 2518 0.0
> Ahg489208 jgi|Araly1|489208|fgenesh2_kg.6__2342__AT5G23450.2
Length=2995
Score = 2518 bits (1363), Expect = 0.0
Identities = 1547/1633 (95%), Gaps = 24/1633 (1%)
Strand=Plus/Plus
Query 1462 GTTCTTAATGGTCTGCTTACTCGAAGCAATCCGAAAGAAGGAGTTTCTATCCCAATTGGA 1521
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 GTTCTTAATGGTCTACTTACTCGAAGCAATCAGAAAGAAGGAGTTTCTATCCCAATTGGA 1433
Query 1522 ATAGTACCTGCTGGTTCTGATAACTCGTTAGTTTGGACTGTCCTTGGTGTAAGAGATCCT 1581
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 ATAGTACCTGCTGGTTCTGATAACTCGTTAGTTTGGACTGTCCTTGGTGTACGAGATCCT 1493
Query 1582 ATTTCTGCAGCACTCTCTATTGTGAAGGGTGGCCTAACAGCTACTGATGTCTTTGCTGTT 1641
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 ATTTCTGCAGCACTATCTATTGTGAAGGGTGGCCTAACAGCTACTGATGTCTTTGCTGTT 1553
Query 1642 GAATGGATTCATACCGGTATTATACACTTTGGAATGACTGTTTCCTACTATGGTTTTGTT 1701
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1554 GAATGGATTCATACCGGTGTTATACACTTTGGAATGACTGTATCCTACTATGGTTTTGTT 1613
Query 1702 AGCGATGTTTTGGAGCTCTCTGAAAAATACCAAAAACGGTTTGGTCCTTTGCGTTACTTT 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AGCGATGTTTTGGAGCTCTCTGAAAAATACCAAAAACGGTTTGGTCCTTTGCGTTACTTT 1673
Query 1762 GTTGCTGGATTCCTCAAGTTCATGTGTTTGCCGAAGTATAGCTATGAAGTGGAATATCTT 1821
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1674 GTTGCTGGATTCCTCAAGTTCATGTGTTTGCCAAAGTATAGCTATGAAGTGGAATATCTT 1733
Query 1822 CCGGCACAAAAAGAGGATGCAGAAGGCAAAATTCGACTTGAAAAGGAAGCTG-TGGATAT 1880
|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1734 CCGGCACAAAAAGAGGATGCGGAAGGCAAAATTCGACTTGAAAAGGAAGC-GATGGATAT 1792
Query 1881 GCAAGATCTCTACACGGATGTAATGAGGAGATCAAGCAGAGAAGGATTTCCTAGAGCCTC 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 GCAAGATCTCTACACGGATGTAATGAGGAGATCAAGCAGAGAAGGATTTCCTAGAGCCTC 1852
Query 1941 CAGTTTATCAAGTATTGACTCCATAATGACCCCAAGCGTAGGCGAATTAGACACTTGTAG 2000
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1853 TAGTTTATCAAGTATTGACTCCATAATGACCCCAAGCGTAGGCGAAGTAGACACGTGTAG 1912
Query 2001 CAGCACACATGCCAGCACTGAGCCGTCTGAATATGTCCGTGGAATAGATCCTAAAATGAA 2060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 CAGCACACATGCCAGCACTGAGCCGTCTGAATATGTCCGTGGAATAGATCCTAAAATGAA 1972
Query 2061 ACGCTTGTCCTCTGGAAGAAGAGATGTTACGGCTGAGCCAGAGGTTATTCATCCTCAAGC 2120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 ACGCATGTCCTCTGGAAGAAGAGATGTTACGGCTGAGCCAGAGGTTATTCATCCTCAAGC 2032
Query 2121 ACAGTCAACAACCCCTAATTGGCCAAGGACAAGATCAAAGTCAAGAATGGATAAAGGATG 2180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2033 ACAGTCAACAACCCCTAATTGGCCAAGGACAAGGTCAAAGTCAAGAATGGATAAAGGATG 2092
Query 2181 GATGGGGTTAACATCCGTGCAGGATCCTCCAACTCGATGTTCATGGGGGAATACCGGTGG 2240
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2093 GATGGGGTTAACATCTGTGCAGGATCCTCCAACTCGATGTTCATGGGGAAATACCGGTGG 2152
Query 2241 TCAAGACAGGGAAGATATATCATCTACTGTATCTGATCCAGGTCCAATCTGGGATGCAGG 2300
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2153 TCATGACAGGGAAGATATATCATCTACTGTATCTGATCCAGGTCCGATCTGGGATGCAGG 2212
Query 2301 ACCCAAATGGGACACTGAACCGTCTGCTTGGGATGTAGAAAATTCGATCGAGCTGCCTGG 2360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2213 ACCCAAATGGGACACTGAACCGTCTGCTTGGGATGTAGAAAACTCGATCGAGCTGCCTGG 2272
Query 2361 TCCTCCTGAGGATATAGAGACAGGACTGAGGAAACAGAGCATCACTCCAATATTTGAGGA 2420
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 2273 TCCTCCTGAGGATATAGAGACTGGACTGAGGAAGCAGAGCATCACACCAATATTTGAGGA 2332
Query 2421 TAAATGGGTTTCGAGAAAGGGACATTTCCTCGGCATCATGGTCTGTAACCATGCTTGTCG 2480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2333 TAAATGGGTTTCGAGAAAGGGGCATTTCCTCGGCATCATGGTCTGTAACCATGCTTGTCG 2392
Query 2481 GACTGTGCAAAGTTCCCAAGTCGTGGCTCCCAATTCAGAACATGATGATGGTACAATGGA 2540
||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 2393 GACTGTGCAGAGTTCTCAAGTTGTGGCTCCCAATTCAGAACATGACGATGGTACAATGGA 2452
Query 2541 TATGCTCTTGGTTCATGGGTGTGGAAGACTGAGGTTACTGAGGTTTTTTATACTTTTGCA 2600
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 2453 CATGCTCTTGGTTCACGGGTGTGGAAGACTGAGGTTGCTGAGGTTTTTCATACTTCTGCA 2512
Query 2601 AACAGGTCGACACCTTTCTCTTCCGTATGTTGAGTGTGTAAAGGTGAAATCAGTGAAGAT 2660
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2513 AACAGGTCGACACCTTTCTCTTCCGTATGTCGAGTGTGTAAAGGTGAAATCGGTGAAGAT 2572
Query 2661 AAAGGCGGGGAAAAATACGCATGACAGTTGCGGGATAGACGGGGAACTGTTTGCATTGCA 2720
||| ||||| |||||||||||||||||||| || |||||||| || |||||||| |||||
Sbjct 2573 AAAAGCGGGAAAAAATACGCATGACAGTTGTGGTATAGACGGAGAGCTGTTTGCGTTGCA 2632
Query 2721 TGGAGAAGTGATATCGACAATGCTACCTGAACAATGCAGACTGATCGGTAACGCTCCTGG 2780
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2633 TGGAGAAGTGATATCGACAATGCTACCTGAACAATGCAGACTGATCGGTAATGCTCCTGG 2692
Query 2781 ACGACATTCATAGTTAATTAATCTCATCTAAATTGTGAGGATGG----TGAGAGAG--TT 2834
|||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 2693 ACGACATTCATAGTTAATTAATCTCATCCAAATTGTGAGGATGGAGAATGAGAGAGAGTT 2752
Query 2835 TGGATGTTTATATATCTGGAATTCAtttttattgttttttgttt--tttGTCGGCGTCAA 2892
||||||||||||||||| |||||| ||||| |||| || ||| ||| || ||
Sbjct 2753 TGGATGTTTATATATCTTGAATTCTTTTTTTTTGTCGGC-GTCAAGTTTA-CGG-GT-AA 2808
Query 2893 GT-TTACGGTAAGTACCATCTATGTGATAAGAGAAGCAAACATGAGAGAGTATACCAAGT 2951
|| ||| || | | ||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 2809 GTATTAT--TATCT-C-ATCTATGTGATAAGAGAAGTAA-CATGAGAGAGTATACCA-GT 2862
Query 2952 ACATCCTTTTGTGCCATAACTTCCCTATAACTCTAAAACCC-TTTGTATATTCTTTTGCC 3010
|||||||| |||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2863 ACATCCTTATGTGCCATAAGTTCCCTAAAACTCTAAAACCCCTTTGTATATTCTTTTGCC 2922
Query 3011 CTTTTTTGTGTGT-TTT-GAATTATATATGTACTGTGTACGTGTTTTCTACAACGATTTG 3068
||||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 2923 CTTTTTTGTGTGTGTTTTGAATTATATATGTACTGTGTATGTGTTTCCTACAACGATTTG 2982
Query 3069 TGTGTTTCCATTT 3081
||||||| |||||
Sbjct 2983 TGTGTTTTCATTT 2995
Score = 1810 bits (980), Expect = 0.0
Identities = 1292/1430 (90%), Gaps = 71/1430 (5%)
Strand=Plus/Plus
Query 1 GAAATAAATCCGAAAGGAGGGGGCCATAGGTTTCTGCTGTCGAGTCGAATCCAATCG-AA 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 GAAATAAATCCGAAAGGAGGGGGCCATAGGTTTCTGCTGTCGAGTCGAATCCAATCGAAA 60
Query 60 ATCGAATCGAAATTGAGTCGAGTCATCATCTCCTCCGCCATTATCGTCTtctctctctct 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCGAATCG-AATTGAGTCGAGTCATCATCTCCTCCGCCATTATCGTCTTCTCTCTCTCT 119
Query 120 ctctcCGCCACCTCTCTTCAATTCTGACGCTTCTCAGATCCTCCGATCCGGCGGCGTTAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCTCCGCCACCTCTCTTCAATTCTGACGCTTCTCAGATCCTCCGATCCGGCGGCGTTAC 179
Query 180 TTTTGCTGATACACTTCTCTCCATTTCTTCTTTTTGTTCGCCGAGAAGCTAAGG-AGAAT 238
||||||| | || | | ||||||||||||||||||| | |||
Sbjct 180 TTTTGCT--T----TT-T-T---------------GTTCGCCGAGAAGCTAAGGGAAAAT 216
Query 239 TCTTCCTGAAAA-CGCGTTGATGGATCTGATGTATAGCTACGGATTAGAA-T---T--G- 290
| ||| |||||| |||||||| ||||||||| |||||||||||||||||| | | |
Sbjct 217 T-TTC-TGAAAAACGCGTTGACGGATCTGATATATAGCTACGGATTAGAAATGGCTTCGC 274
Query 291 TG--TAATTCTCTCTAAAATCTGTTCGTTGACCAGCTCGAACGAGGTTTGATTGGGTTTC 348
|| ||||||||||| |||||||||||||||||||||||||| ||||| | || |||
Sbjct 275 TGCGTAATTCTCTCTGAAATCTGTTCGTTGACCAGCTCGAACAAGGTT-G---GG-TTT- 328
Query 349 TCTGTTTATGCTCATCAGGGGTTTTGTTTTGTGTATGCCTTCCGATCACTGTTTGTCGTC 408
| ||||| || | | | | | | | ||| || | | | || ||||| ||||
Sbjct 329 T-TGTTT-TG-TG-T-ATGCCTCCCGATCACTGTTTG--T-C-G-TC--TGTTT--CGTC 374
Query 409 TGTTTCGTCCGCGGAACTCAAGAGCAGAGAGATTGTTAG-TGTACGGATATGCAGAAGAG 467
|| | | | |||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 375 -----CG-C-G-G-AACTCAAGAGCAGAGAGATTATTAGCT-TACGGATATGCAGAAGAG 424
Query 468 TGGTGTTAATCGGAACCCTTCTTTGAA-AGTAGCCATTCCTCAGGCACAACAGTCGCTTA 526
||| || |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 425 TGGCGTAAATCGGAATCCTTCTTT-AAGAGTAGCCATTCCTCAGGCACAACAGTCGCTTA 483
Query 527 GACGTTTAGGTTTTTGCTCCCAAATAGCTACGGGTGGATCTCAGCAGTCATCTCCTATAG 586
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| | |
Sbjct 484 GGCGTTTAGGTTTTTGCTCTCAAATAGCTACGGGCGGATCTCAGCAGTCATCTCCTGTGG 543
Query 587 TATTCCCTGAAAAGAGAAATAAGAAGGTGAAGGCATCTTCGAGACGTGGTGAGGTTACTA 646
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TATTCCCTGAAAAGAGAAGCAAGAAGGTGAAGGCATCTTCGAGACGTGGTGAGGTTACTA 603
Query 647 ATGATCCACAGGTGAAACCGAAGCCTGATGAGCATCGGATCGATATTGGTGGAGGGGATG 706
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 604 ATGATCCACAGGTGAAACCGAAGCCTGATGAGCATCGGATTGATATTGGTGGAGGAGATG 663
Query 707 AGAAATCAGATTTGTTAGGTAGTCTTGTTTACGCTGGGAAGCTTGTGTTGGATAAGAGGA 766
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 664 AGAAATCAGATTTGTTAGGTAGTCTTGTTTACGCCGGGAAGCTTGTATTGGATAAGAGGA 723
Query 767 AATCTGCGAGTGGAAAAGATGCAACAGAGATACAGCAACCAGCCGCTACGGACATCTCTA 826
||||||||||||| |||||||| |||||||||||||||||| | || || ||| ||||||
Sbjct 724 AATCTGCGAGTGGGAAAGATGCTACAGAGATACAGCAACCATCTGCCACAGACGTCTCTA 783
Query 827 TTAAGAAAGCAGTTGATGCAAAGCTTACAAGCAGCGCTTTGGTTTGGGGTTCTGACATGC 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ATAAGAAAGCAGTTGATGCAAAGCTTACAAGCAGCGCTTTGGTTTGGGGTTCTGACATGC 843
Query 887 TACAGCTTAACGATGTTGTCTCGGTGACATACAATGTTGGTCTTAGGCATTTCACTGTGC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TACAGCTTAACGATGTTGTCTCGGTGACATACAATGTTGGTCTTAGGCATTTCACTGTGC 903
Query 947 ATGCTTATCCAATTGGCAAGGGTTCTTGTGGCCTGTCTTGCTTCACGAAACCAAAGAGAA 1006
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 904 ATGCTTATCCAGTTGGAAAGGTTTCTTGTGGCCTGTCTTGCTTCACGAAACCAAAGAGAA 963
Query 1007 GCCGCAAGGATTTCCGCTTTGTCGCACCTACAGTAGAAGAAGCCGTTCAATGGGTGGCCA 1066
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 964 GCCGCAAGGATTTCCGCTTTGTCGCACCTACAGTTGAAGAAGCAGTTCAATGGGTGGCCA 1023
Query 1067 GTTTTGGAGATCAACAATGTTTTATCAACTGTTTGCCACATCCTTTAGTCGCAAAGAAAC 1126
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1024 GTTTTGGAGACCAACAATGTTTTATCAACTGTTTACCACATCCTTTAGTCTCAAAGAAAC 1083
Query 1127 AGGCTTCGTCTGAGTTATTTTCGGTCCCCATTGATACCCCTCCTGAGTTGGTCTTCAGGT 1186
||||||| ||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 1084 AGGCTTCATCTGAGTTATTTTCGGTCCCCGTCGATACTCCTCCCGAGTTGGTCTTCAGGT 1143
Query 1187 GTAAGAGTGCACCCAAAATGCTTGTCATATTGAACCCTAGGTCAGGACATGGACGATCTA 1246
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1144 GTAAGAGTGCACCCAAAATGCTTGTCATATTGAACCCTAGGTCAGGGCATGGACGATCTA 1203
Query 1247 TCAAAGTTTTCCATAATGTCGTGGAACCAATTTTCAAGCTGGCCGGAATTAAGATGGAGG 1306
||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct 1204 TCAAAGTGTTCCACAATGTAGTGGAGCCAATTTTCAAGCTGGCCGGGGTTAAGATGGAGG 1263
Query 1307 TTGTCAAAACAACTAAAGCAGGTCATGCGAGAGAATTGGCTTCCACTGTCGACATTAACT 1366
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1264 TTGTCAAAACAACTAAAGCAGGTCACGCGAGAGAGTTGGCTTCCACTGTCGACATTAACT 1323
Query 1367 TATGCTCTGACGGAATTATTTGTGTTGGAGGGGATGGAATCATCAATGAG 1416
| ||||| ||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1324 TGTGCTCAGACGGTATAATTTGTGTTGGAGGTGATGGAATCATCAATGAG 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118079759500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5